EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000012467 (Gene tree)
Gene ID: 103138523
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 1558 bases
Position: chrKI519662.1:2003874-2005431
Accession: ZDB-GENE-030131-8284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000012479	LSM	PF01423.22	6.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000012496	-	756	-	ENSPFOP00000012479	113 (aa)	-	A0A087Y376

Gene Model

Click here to download ENSPFOG00000012467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012467's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000012467	lsm7	63	38.028	ENSPFOG00000016200	snrpg	83	38.028
ENSPFOG00000012467	lsm7	65	35.526	ENSPFOG00000012340	lsm8	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000012467	lsm7	91	93.204	ENSG00000130332	LSM7	100	93.878	Homo_sapiens
ENSPFOG00000012467	lsm7	84	97.895	ENSAPOG00000015573	lsm7	82	97.895	Acanthochromis_polyacanthus
ENSPFOG00000012467	lsm7	91	94.175	ENSAMEG00000005484	LSM7	100	94.175	Ailuropoda_melanoleuca
ENSPFOG00000012467	lsm7	86	97.938	ENSACIG00000006498	lsm7	77	97.938	Amphilophus_citrinellus
ENSPFOG00000012467	lsm7	90	97.059	ENSAOCG00000001077	lsm7	93	97.059	Amphiprion_ocellaris
ENSPFOG00000012467	lsm7	97	94.545	ENSAPEG00000024447	lsm7	98	94.545	Amphiprion_percula
ENSPFOG00000012467	lsm7	91	96.117	ENSAPEG00000000694	lsm7	100	96.117	Amphiprion_percula
ENSPFOG00000012467	lsm7	91	96.117	ENSATEG00000008557	lsm7	100	96.117	Anabas_testudineus
ENSPFOG00000012467	lsm7	91	93.204	ENSANAG00000037196	-	100	93.204	Aotus_nancymaae
ENSPFOG00000012467	lsm7	91	84.466	ENSANAG00000022222	-	100	84.466	Aotus_nancymaae
ENSPFOG00000012467	lsm7	91	95.146	ENSACLG00000021021	lsm7	100	95.146	Astatotilapia_calliptera
ENSPFOG00000012467	lsm7	91	94.175	ENSAMXG00000037622	lsm7	100	94.175	Astyanax_mexicanus
ENSPFOG00000012467	lsm7	91	93.204	ENSBTAG00000004521	LSM7	100	93.204	Bos_taurus
ENSPFOG00000012467	lsm7	89	57.426	WBGene00003081	lsm-7	97	57.426	Caenorhabditis_elegans
ENSPFOG00000012467	lsm7	63	76.056	ENSCJAG00000039713	-	87	76.056	Callithrix_jacchus
ENSPFOG00000012467	lsm7	90	94.118	ENSCAFG00000019409	LSM7	99	94.118	Canis_familiaris
ENSPFOG00000012467	lsm7	90	94.118	ENSCAFG00020018168	LSM7	74	94.059	Canis_lupus_dingo
ENSPFOG00000012467	lsm7	91	95.146	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
ENSPFOG00000012467	lsm7	63	94.366	ENSCAPG00000014534	LSM7	100	94.366	Cavia_aperea
ENSPFOG00000012467	lsm7	91	93.204	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSPFOG00000012467	lsm7	89	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSPFOG00000012467	lsm7	91	93.204	ENSCATG00000023543	LSM7	100	93.204	Cercocebus_atys
ENSPFOG00000012467	lsm7	91	93.204	ENSCLAG00000011635	LSM7	100	93.204	Chinchilla_lanigera
ENSPFOG00000012467	lsm7	91	93.204	ENSCSAG00000011599	LSM7	100	93.204	Chlorocebus_sabaeus
ENSPFOG00000012467	lsm7	64	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSPFOG00000012467	lsm7	85	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSPFOG00000012467	lsm7	91	93.204	ENSCANG00000035525	LSM7	100	93.204	Colobus_angolensis_palliatus
ENSPFOG00000012467	lsm7	80	85.556	ENSCGRG00001016005	-	92	85.556	Cricetulus_griseus_chok1gshd
ENSPFOG00000012467	lsm7	91	92.233	ENSCGRG00001000807	-	100	92.233	Cricetulus_griseus_chok1gshd
ENSPFOG00000012467	lsm7	80	85.556	ENSCGRG00000006821	-	92	85.556	Cricetulus_griseus_crigri
ENSPFOG00000012467	lsm7	90	94.118	ENSCGRG00000014355	-	98	94.118	Cricetulus_griseus_crigri
ENSPFOG00000012467	lsm7	96	92.593	ENSCSEG00000014900	lsm7	86	98.020	Cynoglossus_semilaevis
ENSPFOG00000012467	lsm7	95	94.393	ENSCVAG00000021091	lsm7	99	94.393	Cyprinodon_variegatus
ENSPFOG00000012467	lsm7	91	94.175	ENSDARG00000058328	lsm7	100	94.175	Danio_rerio
ENSPFOG00000012467	lsm7	89	93.069	ENSDORG00000024460	Lsm7	99	93.069	Dipodomys_ordii
ENSPFOG00000012467	lsm7	86	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSPFOG00000012467	lsm7	90	93.137	ENSETEG00000012788	LSM7	100	93.137	Echinops_telfairi
ENSPFOG00000012467	lsm7	91	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSPFOG00000012467	lsm7	73	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSPFOG00000012467	lsm7	91	89.320	ENSECAG00000001440	LSM7	71	84.685	Equus_caballus
ENSPFOG00000012467	lsm7	91	92.233	ENSFCAG00000003445	LSM7	100	92.233	Felis_catus
ENSPFOG00000012467	lsm7	89	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSPFOG00000012467	lsm7	85	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSPFOG00000012467	lsm7	95	94.393	ENSFHEG00000006349	lsm7	96	94.393	Fundulus_heteroclitus
ENSPFOG00000012467	lsm7	91	96.117	ENSGMOG00000013320	lsm7	100	96.117	Gadus_morhua
ENSPFOG00000012467	lsm7	91	97.087	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSPFOG00000012467	lsm7	91	96.117	ENSGACG00000010390	lsm7	100	96.117	Gasterosteus_aculeatus
ENSPFOG00000012467	lsm7	91	93.204	ENSGGOG00000010172	LSM7	100	93.204	Gorilla_gorilla
ENSPFOG00000012467	lsm7	98	91.071	ENSHBUG00000004616	lsm7	100	95.146	Haplochromis_burtoni
ENSPFOG00000012467	lsm7	91	93.204	ENSHGLG00000010587	LSM7	100	93.204	Heterocephalus_glaber_female
ENSPFOG00000012467	lsm7	91	93.204	ENSHGLG00100000852	LSM7	100	93.204	Heterocephalus_glaber_male
ENSPFOG00000012467	lsm7	89	97.030	ENSHCOG00000020252	lsm7	100	97.030	Hippocampus_comes
ENSPFOG00000012467	lsm7	91	94.175	ENSIPUG00000024724	lsm7	100	94.175	Ictalurus_punctatus
ENSPFOG00000012467	lsm7	90	95.098	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSPFOG00000012467	lsm7	88	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSPFOG00000012467	lsm7	91	97.087	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSPFOG00000012467	lsm7	91	96.117	ENSLBEG00000005203	lsm7	100	96.117	Labrus_bergylta
ENSPFOG00000012467	lsm7	82	95.699	ENSLACG00000015700	LSM7	100	95.146	Latimeria_chalumnae
ENSPFOG00000012467	lsm7	91	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSPFOG00000012467	lsm7	90	95.098	ENSLAFG00000029302	LSM7	99	95.098	Loxodonta_africana
ENSPFOG00000012467	lsm7	91	93.204	ENSMFAG00000044572	LSM7	100	93.204	Macaca_fascicularis
ENSPFOG00000012467	lsm7	91	93.204	ENSMMUG00000000452	LSM7	99	95.050	Macaca_mulatta
ENSPFOG00000012467	lsm7	91	93.204	ENSMNEG00000004393	LSM7	100	93.204	Macaca_nemestrina
ENSPFOG00000012467	lsm7	91	93.204	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSPFOG00000012467	lsm7	91	95.146	ENSMAMG00000005410	lsm7	100	95.146	Mastacembelus_armatus
ENSPFOG00000012467	lsm7	91	95.146	ENSMZEG00005028055	lsm7	100	95.146	Maylandia_zebra
ENSPFOG00000012467	lsm7	91	95.146	ENSMGAG00000000750	LSM7	89	95.146	Meleagris_gallopavo
ENSPFOG00000012467	lsm7	91	93.204	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSPFOG00000012467	lsm7	91	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSPFOG00000012467	lsm7	91	93.204	ENSMICG00000028619	-	100	93.204	Microcebus_murinus
ENSPFOG00000012467	lsm7	91	92.233	ENSMOCG00000016925	Lsm7	100	92.233	Microtus_ochrogaster
ENSPFOG00000012467	lsm7	91	96.117	ENSMMOG00000019645	lsm7	98	96.117	Mola_mola
ENSPFOG00000012467	lsm7	91	94.175	ENSMODG00000004722	LSM7	100	94.175	Monodelphis_domestica
ENSPFOG00000012467	lsm7	91	95.146	ENSMALG00000014511	lsm7	79	95.146	Monopterus_albus
ENSPFOG00000012467	lsm7	90	92.157	MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	Mus_caroli
ENSPFOG00000012467	lsm7	90	92.157	ENSMUSG00000035215	Lsm7	99	92.157	Mus_musculus
ENSPFOG00000012467	lsm7	90	92.157	MGP_PahariEiJ_G0031020	Lsm7	99	92.157	Mus_pahari
ENSPFOG00000012467	lsm7	90	92.157	MGP_SPRETEiJ_G0016425	Lsm7	99	92.157	Mus_spretus
ENSPFOG00000012467	lsm7	91	94.175	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
ENSPFOG00000012467	lsm7	90	87.255	ENSMLUG00000024002	-	94	87.255	Myotis_lucifugus
ENSPFOG00000012467	lsm7	91	91.262	ENSNGAG00000021637	Lsm7	100	91.262	Nannospalax_galili
ENSPFOG00000012467	lsm7	83	97.872	ENSNBRG00000001237	-	92	90.435	Neolamprologus_brichardi
ENSPFOG00000012467	lsm7	98	91.071	ENSNBRG00000015770	lsm7	97	91.071	Neolamprologus_brichardi
ENSPFOG00000012467	lsm7	91	93.204	ENSNLEG00000002265	LSM7	100	93.204	Nomascus_leucogenys
ENSPFOG00000012467	lsm7	91	93.204	ENSODEG00000013590	-	100	93.204	Octodon_degus
ENSPFOG00000012467	lsm7	91	72.816	ENSODEG00000008190	-	100	72.816	Octodon_degus
ENSPFOG00000012467	lsm7	91	86.408	ENSODEG00000018769	-	100	86.408	Octodon_degus
ENSPFOG00000012467	lsm7	91	95.146	ENSONIG00000001801	lsm7	89	95.146	Oreochromis_niloticus
ENSPFOG00000012467	lsm7	91	98.058	ENSORLG00000023951	lsm7	100	96.117	Oryzias_latipes
ENSPFOG00000012467	lsm7	91	98.058	ENSORLG00020022226	lsm7	100	96.117	Oryzias_latipes_hni
ENSPFOG00000012467	lsm7	91	98.058	ENSORLG00015020044	lsm7	94	97.059	Oryzias_latipes_hsok
ENSPFOG00000012467	lsm7	91	96.117	ENSOMEG00000012806	lsm7	100	96.117	Oryzias_melastigma
ENSPFOG00000012467	lsm7	90	95.098	ENSOGAG00000000144	-	100	95.098	Otolemur_garnettii
ENSPFOG00000012467	lsm7	91	83.495	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSPFOG00000012467	lsm7	91	95.146	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
ENSPFOG00000012467	lsm7	91	93.204	ENSPPAG00000026500	LSM7	100	93.204	Pan_paniscus
ENSPFOG00000012467	lsm7	91	92.233	ENSPPRG00000008624	LSM7	100	92.233	Panthera_pardus
ENSPFOG00000012467	lsm7	89	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSPFOG00000012467	lsm7	91	93.204	ENSPTRG00000010233	LSM7	100	93.204	Pan_troglodytes
ENSPFOG00000012467	lsm7	91	93.204	ENSPANG00000020668	LSM7	100	93.204	Papio_anubis
ENSPFOG00000012467	lsm7	91	96.117	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSPFOG00000012467	lsm7	89	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSPFOG00000012467	lsm7	91	96.117	ENSPMGG00000006498	lsm7	100	96.117	Periophthalmus_magnuspinnatus
ENSPFOG00000012467	lsm7	91	94.175	ENSPCIG00000030454	LSM7	99	96.040	Phascolarctos_cinereus
ENSPFOG00000012467	lsm7	100	96.460	ENSPLAG00000000252	lsm7	99	96.262	Poecilia_latipinna
ENSPFOG00000012467	lsm7	100	100.000	ENSPMEG00000000587	lsm7	100	100.000	Poecilia_mexicana
ENSPFOG00000012467	lsm7	71	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSPFOG00000012467	lsm7	98	69.369	ENSPPYG00000009348	-	71	69.369	Pongo_abelii
ENSPFOG00000012467	lsm7	91	93.204	ENSPCOG00000017177	LSM7	99	95.050	Propithecus_coquereli
ENSPFOG00000012467	lsm7	91	95.146	ENSPNYG00000006938	lsm7	100	95.146	Pundamilia_nyererei
ENSPFOG00000012467	lsm7	91	94.175	ENSPNAG00000010141	lsm7	99	96.040	Pygocentrus_nattereri
ENSPFOG00000012467	lsm7	90	93.137	ENSRNOG00000019552	Lsm7	99	93.137	Rattus_norvegicus
ENSPFOG00000012467	lsm7	91	93.204	ENSRBIG00000035978	LSM7	100	93.204	Rhinopithecus_bieti
ENSPFOG00000012467	lsm7	91	93.204	ENSRROG00000034044	LSM7	100	93.204	Rhinopithecus_roxellana
ENSPFOG00000012467	lsm7	79	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSPFOG00000012467	lsm7	91	93.204	ENSSBOG00000034899	LSM7	100	93.204	Saimiri_boliviensis_boliviensis
ENSPFOG00000012467	lsm7	91	94.175	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSPFOG00000012467	lsm7	91	97.087	ENSSMAG00000004195	lsm7	94	97.087	Scophthalmus_maximus
ENSPFOG00000012467	lsm7	91	96.117	ENSSDUG00000001863	lsm7	100	96.117	Seriola_dumerili
ENSPFOG00000012467	lsm7	91	96.117	ENSSLDG00000016339	lsm7	100	96.117	Seriola_lalandi_dorsalis
ENSPFOG00000012467	lsm7	91	96.117	ENSSPAG00000015221	lsm7	100	96.117	Stegastes_partitus
ENSPFOG00000012467	lsm7	89	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSPFOG00000012467	lsm7	89	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSPFOG00000012467	lsm7	91	95.146	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSPFOG00000012467	lsm7	91	95.146	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSPFOG00000012467	lsm7	62	81.429	ENSTBEG00000016602	LSM7	100	81.429	Tupaia_belangeri
ENSPFOG00000012467	lsm7	91	94.175	ENSUAMG00000000912	LSM7	86	94.175	Ursus_americanus
ENSPFOG00000012467	lsm7	90	93.137	ENSUMAG00000006556	LSM7	79	94.059	Ursus_maritimus
ENSPFOG00000012467	lsm7	63	92.958	ENSVVUG00000002640	LSM7	65	92.958	Vulpes_vulpes
ENSPFOG00000012467	lsm7	89	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSPFOG00000012467	lsm7	89	99.010	ENSXCOG00000002572	lsm7	99	99.010	Xiphophorus_couchianus
ENSPFOG00000012467	lsm7	96	97.222	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus