EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000012560 (Gene tree)
Gene ID: 103141734
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 57017 bases
Position: chrKI519698.1:1980903-2037919
Accession: 103141734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000029297	Ago_hook	PF10427.9	6.9e-07	1	1
ENSPFOP00000022547	Ago_hook	PF10427.9	8e-07	1	1
ENSPFOP00000022547	RRM_1	PF00076.22	0.00019	1	1
ENSPFOP00000012831	RRM_1	PF00076.22	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000012848	-	5890	-	ENSPFOP00000012831	1884 (aa)	XP_016529430	A0A087Y478
ENSPFOT00000023703	-	5779	-	ENSPFOP00000022547	1847 (aa)	-	A0A096LTQ6
ENSPFOT00000024714	-	3324	-	ENSPFOP00000029297	896 (aa)	-	A0A096MD06
ENSPFOT00000023551	-	4776	-	ENSPFOP00000030705	1530 (aa)	-	A0A096MH14

Gene Model

Click here to download ENSPFOG00000012560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012560's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000012560	tnrc6c1	85	30.939	ENSPFOG00000006033	-	61	38.400
ENSPFOG00000012560	tnrc6c1	99	58.115	ENSPFOG00000011590	tnrc6c2	52	66.413

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000012560	tnrc6c1	97	57.143	ENSG00000078687	TNRC6C	100	51.724	Homo_sapiens
ENSPFOG00000012560	tnrc6c1	99	84.098	ENSAPOG00000019749	tnrc6c1	99	85.832	Acanthochromis_polyacanthus
ENSPFOG00000012560	tnrc6c1	97	54.435	ENSAMEG00000013756	TNRC6C	99	47.732	Ailuropoda_melanoleuca
ENSPFOG00000012560	tnrc6c1	99	79.104	ENSACIG00000008075	tnrc6c1	99	76.093	Amphilophus_citrinellus
ENSPFOG00000012560	tnrc6c1	99	80.352	ENSAOCG00000023968	tnrc6c1	99	86.141	Amphiprion_ocellaris
ENSPFOG00000012560	tnrc6c1	99	80.352	ENSAPEG00000009020	tnrc6c1	99	86.141	Amphiprion_percula
ENSPFOG00000012560	tnrc6c1	97	57.829	ENSAPLG00000005456	TNRC6C	98	48.465	Anas_platyrhynchos
ENSPFOG00000012560	tnrc6c1	96	58.023	ENSACAG00000016198	TNRC6C	95	49.027	Anolis_carolinensis
ENSPFOG00000012560	tnrc6c1	97	56.535	ENSANAG00000021554	TNRC6C	100	48.321	Aotus_nancymaae
ENSPFOG00000012560	tnrc6c1	98	72.819	ENSACLG00000000424	tnrc6c1	99	75.112	Astatotilapia_calliptera
ENSPFOG00000012560	tnrc6c1	93	58.934	ENSBTAG00000018658	TNRC6C	100	49.640	Bos_taurus
ENSPFOG00000012560	tnrc6c1	97	56.224	ENSCJAG00000019431	TNRC6C	100	48.431	Callithrix_jacchus
ENSPFOG00000012560	tnrc6c1	97	55.927	ENSCAFG00000005224	TNRC6C	96	48.500	Canis_familiaris
ENSPFOG00000012560	tnrc6c1	98	53.582	ENSCAFG00020006661	TNRC6C	100	48.195	Canis_lupus_dingo
ENSPFOG00000012560	tnrc6c1	97	57.354	ENSCHIG00000026004	TNRC6C	100	48.946	Capra_hircus
ENSPFOG00000012560	tnrc6c1	97	57.442	ENSTSYG00000005403	TNRC6C	100	49.538	Carlito_syrichta
ENSPFOG00000012560	tnrc6c1	98	49.550	ENSCAPG00000007307	TNRC6C	96	45.620	Cavia_aperea
ENSPFOG00000012560	tnrc6c1	97	53.753	ENSCPOG00000000467	TNRC6C	99	48.974	Cavia_porcellus
ENSPFOG00000012560	tnrc6c1	97	58.798	ENSCCAG00000030524	TNRC6C	100	48.599	Cebus_capucinus
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSCATG00000033135	TNRC6C	100	48.681	Cercocebus_atys
ENSPFOG00000012560	tnrc6c1	97	54.158	ENSCLAG00000011139	TNRC6C	97	49.049	Chinchilla_lanigera
ENSPFOG00000012560	tnrc6c1	97	57.322	ENSCSAG00000005167	TNRC6C	96	47.897	Chlorocebus_sabaeus
ENSPFOG00000012560	tnrc6c1	70	57.269	ENSCHOG00000000088	TNRC6C	65	63.060	Choloepus_hoffmanni
ENSPFOG00000012560	tnrc6c1	98	60.793	ENSCPBG00000027960	TNRC6C	97	52.129	Chrysemys_picta_bellii
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSCANG00000041771	TNRC6C	100	48.681	Colobus_angolensis_palliatus
ENSPFOG00000012560	tnrc6c1	98	53.664	ENSCGRG00001022686	Tnrc6c	100	48.337	Cricetulus_griseus_chok1gshd
ENSPFOG00000012560	tnrc6c1	98	54.271	ENSCGRG00000018041	Tnrc6c	100	48.337	Cricetulus_griseus_crigri
ENSPFOG00000012560	tnrc6c1	98	75.616	ENSCSEG00000012744	tnrc6c1	100	75.493	Cynoglossus_semilaevis
ENSPFOG00000012560	tnrc6c1	99	63.525	ENSDARG00000076847	tnrc6c1	100	60.526	Danio_rerio
ENSPFOG00000012560	tnrc6c1	97	59.361	ENSDNOG00000003247	TNRC6C	100	49.073	Dasypus_novemcinctus
ENSPFOG00000012560	tnrc6c1	97	51.512	ENSDORG00000004558	Tnrc6c	100	46.796	Dipodomys_ordii
ENSPFOG00000012560	tnrc6c1	97	50.552	ENSETEG00000005527	TNRC6C	80	57.493	Echinops_telfairi
ENSPFOG00000012560	tnrc6c1	98	53.653	ENSEASG00005004799	TNRC6C	100	49.166	Equus_asinus_asinus
ENSPFOG00000012560	tnrc6c1	98	55.833	ENSECAG00000012486	TNRC6C	97	48.519	Equus_caballus
ENSPFOG00000012560	tnrc6c1	97	54.250	ENSEEUG00000010008	TNRC6C	93	55.880	Erinaceus_europaeus
ENSPFOG00000012560	tnrc6c1	97	52.888	ENSFCAG00000028358	TNRC6C	100	48.339	Felis_catus
ENSPFOG00000012560	tnrc6c1	96	56.499	ENSFALG00000000848	TNRC6C	100	48.909	Ficedula_albicollis
ENSPFOG00000012560	tnrc6c1	97	55.824	ENSFDAG00000010368	TNRC6C	99	49.110	Fukomys_damarensis
ENSPFOG00000012560	tnrc6c1	99	93.053	ENSFHEG00000002936	tnrc6c1	100	93.240	Fundulus_heteroclitus
ENSPFOG00000012560	tnrc6c1	96	61.798	ENSGALG00000001725	TNRC6C	100	51.616	Gallus_gallus
ENSPFOG00000012560	tnrc6c1	99	97.318	ENSGAFG00000019019	tnrc6c1	100	97.750	Gambusia_affinis
ENSPFOG00000012560	tnrc6c1	100	72.527	ENSGACG00000012320	tnrc6c1	100	72.946	Gasterosteus_aculeatus
ENSPFOG00000012560	tnrc6c1	96	59.213	ENSGAGG00000022043	TNRC6C	99	50.570	Gopherus_agassizii
ENSPFOG00000012560	tnrc6c1	98	55.311	ENSGGOG00000011304	TNRC6C	100	48.384	Gorilla_gorilla
ENSPFOG00000012560	tnrc6c1	98	80.186	ENSHBUG00000010846	tnrc6c1	100	81.371	Haplochromis_burtoni
ENSPFOG00000012560	tnrc6c1	97	53.955	ENSHGLG00000004809	TNRC6C	97	48.148	Heterocephalus_glaber_female
ENSPFOG00000012560	tnrc6c1	97	53.367	ENSHGLG00100012597	TNRC6C	97	47.783	Heterocephalus_glaber_male
ENSPFOG00000012560	tnrc6c1	99	61.339	ENSIPUG00000000818	tnrc6c1	99	59.454	Ictalurus_punctatus
ENSPFOG00000012560	tnrc6c1	97	53.495	ENSSTOG00000009101	TNRC6C	100	47.773	Ictidomys_tridecemlineatus
ENSPFOG00000012560	tnrc6c1	98	54.348	ENSJJAG00000017055	Tnrc6c	96	48.069	Jaculus_jaculus
ENSPFOG00000012560	tnrc6c1	99	79.058	ENSKMAG00000021023	tnrc6c1	100	79.801	Kryptolebias_marmoratus
ENSPFOG00000012560	tnrc6c1	83	62.051	ENSLACG00000015283	TNRC6C	95	61.538	Latimeria_chalumnae
ENSPFOG00000012560	tnrc6c1	99	79.532	ENSLOCG00000013377	tnrc6c1	96	79.386	Lepisosteus_oculatus
ENSPFOG00000012560	tnrc6c1	97	57.739	ENSLAFG00000011122	TNRC6C	99	47.446	Loxodonta_africana
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSMFAG00000043943	TNRC6C	100	48.681	Macaca_fascicularis
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSMMUG00000011924	TNRC6C	100	48.653	Macaca_mulatta
ENSPFOG00000012560	tnrc6c1	97	56.788	ENSMNEG00000030405	TNRC6C	100	48.598	Macaca_nemestrina
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSMLEG00000033436	TNRC6C	100	48.681	Mandrillus_leucophaeus
ENSPFOG00000012560	tnrc6c1	99	80.011	ENSMAMG00000023613	tnrc6c1	99	82.155	Mastacembelus_armatus
ENSPFOG00000012560	tnrc6c1	99	80.451	ENSMZEG00005010920	tnrc6c1	99	81.441	Maylandia_zebra
ENSPFOG00000012560	tnrc6c1	90	66.784	ENSMGAG00000003906	TNRC6C	91	65.018	Meleagris_gallopavo
ENSPFOG00000012560	tnrc6c1	97	53.686	ENSMAUG00000021618	Tnrc6c	100	49.062	Mesocricetus_auratus
ENSPFOG00000012560	tnrc6c1	97	55.455	ENSMICG00000003952	TNRC6C	100	49.474	Microcebus_murinus
ENSPFOG00000012560	tnrc6c1	97	54.450	ENSMOCG00000015879	Tnrc6c	99	49.379	Microtus_ochrogaster
ENSPFOG00000012560	tnrc6c1	99	73.854	ENSMMOG00000005203	tnrc6c1	100	79.494	Mola_mola
ENSPFOG00000012560	tnrc6c1	97	54.896	ENSMODG00000001785	TNRC6C	96	48.583	Monodelphis_domestica
ENSPFOG00000012560	tnrc6c1	97	53.983	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	48.894	Mus_caroli
ENSPFOG00000012560	tnrc6c1	97	54.088	ENSMUSG00000025571	Tnrc6c	99	48.949	Mus_musculus
ENSPFOG00000012560	tnrc6c1	97	54.298	MGP_PahariEiJ_G0018593	Tnrc6c	99	49.217	Mus_pahari
ENSPFOG00000012560	tnrc6c1	97	53.878	MGP_SPRETEiJ_G0018309	Tnrc6c	99	48.787	Mus_spretus
ENSPFOG00000012560	tnrc6c1	97	55.415	ENSMPUG00000013348	TNRC6C	96	47.862	Mustela_putorius_furo
ENSPFOG00000012560	tnrc6c1	97	52.008	ENSMLUG00000014431	TNRC6C	99	46.464	Myotis_lucifugus
ENSPFOG00000012560	tnrc6c1	98	53.782	ENSNGAG00000012203	Tnrc6c	96	48.229	Nannospalax_galili
ENSPFOG00000012560	tnrc6c1	99	75.446	ENSNBRG00000005344	tnrc6c1	99	81.813	Neolamprologus_brichardi
ENSPFOG00000012560	tnrc6c1	95	54.723	ENSNLEG00000000047	TNRC6C	96	46.345	Nomascus_leucogenys
ENSPFOG00000012560	tnrc6c1	97	73.810	ENSMEUG00000005104	TNRC6C	96	65.210	Notamacropus_eugenii
ENSPFOG00000012560	tnrc6c1	97	55.509	ENSODEG00000012499	TNRC6C	100	49.361	Octodon_degus
ENSPFOG00000012560	tnrc6c1	99	80.447	ENSONIG00000002210	tnrc6c1	100	82.283	Oreochromis_niloticus
ENSPFOG00000012560	tnrc6c1	70	100.000	ENSOANG00000009758	-	68	100.000	Ornithorhynchus_anatinus
ENSPFOG00000012560	tnrc6c1	81	53.092	ENSOCUG00000006122	TNRC6C	95	54.505	Oryctolagus_cuniculus
ENSPFOG00000012560	tnrc6c1	92	78.802	ENSORLG00000009837	tnrc6c1	100	84.116	Oryzias_latipes
ENSPFOG00000012560	tnrc6c1	99	74.566	ENSORLG00020016510	tnrc6c1	100	79.660	Oryzias_latipes_hni
ENSPFOG00000012560	tnrc6c1	80	69.814	ENSORLG00015000171	tnrc6c1	98	76.862	Oryzias_latipes_hsok
ENSPFOG00000012560	tnrc6c1	99	75.971	ENSOMEG00000000357	tnrc6c1	99	80.621	Oryzias_melastigma
ENSPFOG00000012560	tnrc6c1	98	55.137	ENSOGAG00000007197	TNRC6C	100	48.399	Otolemur_garnettii
ENSPFOG00000012560	tnrc6c1	97	53.692	ENSOARG00000006041	TNRC6C	96	47.934	Ovis_aries
ENSPFOG00000012560	tnrc6c1	97	57.203	ENSPPAG00000027160	TNRC6C	100	48.438	Pan_paniscus
ENSPFOG00000012560	tnrc6c1	97	52.888	ENSPPRG00000018881	TNRC6C	100	48.450	Panthera_pardus
ENSPFOG00000012560	tnrc6c1	97	48.016	ENSPTIG00000008791	TNRC6C	85	54.299	Panthera_tigris_altaica
ENSPFOG00000012560	tnrc6c1	97	57.307	ENSPTRG00000009699	TNRC6C	100	48.515	Pan_troglodytes
ENSPFOG00000012560	tnrc6c1	97	56.891	ENSPANG00000019994	TNRC6C	100	48.733	Papio_anubis
ENSPFOG00000012560	tnrc6c1	99	57.468	ENSPKIG00000005428	tnrc6c1	100	56.930	Paramormyrops_kingsleyae
ENSPFOG00000012560	tnrc6c1	96	55.367	ENSPSIG00000018069	TNRC6C	99	48.898	Pelodiscus_sinensis
ENSPFOG00000012560	tnrc6c1	86	74.909	ENSPMGG00000022911	tnrc6c1	98	77.689	Periophthalmus_magnuspinnatus
ENSPFOG00000012560	tnrc6c1	97	54.564	ENSPEMG00000009785	Tnrc6c	100	47.566	Peromyscus_maniculatus_bairdii
ENSPFOG00000012560	tnrc6c1	99	91.586	ENSPLAG00000021055	tnrc6c1	100	99.812	Poecilia_latipinna
ENSPFOG00000012560	tnrc6c1	97	57.307	ENSPPYG00000008679	TNRC6C	95	47.871	Pongo_abelii
ENSPFOG00000012560	tnrc6c1	79	66.222	ENSPCAG00000012510	TNRC6C	89	66.222	Procavia_capensis
ENSPFOG00000012560	tnrc6c1	97	55.567	ENSPCOG00000021451	TNRC6C	100	49.334	Propithecus_coquereli
ENSPFOG00000012560	tnrc6c1	98	53.021	ENSPVAG00000002008	TNRC6C	95	59.701	Pteropus_vampyrus
ENSPFOG00000012560	tnrc6c1	99	78.804	ENSPNYG00000014477	tnrc6c1	100	81.841	Pundamilia_nyererei
ENSPFOG00000012560	tnrc6c1	97	54.193	ENSRNOG00000022395	Tnrc6c	97	50.029	Rattus_norvegicus
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSRBIG00000027777	TNRC6C	100	48.947	Rhinopithecus_bieti
ENSPFOG00000012560	tnrc6c1	97	57.427	ENSRROG00000042912	TNRC6C	100	48.947	Rhinopithecus_roxellana
ENSPFOG00000012560	tnrc6c1	97	57.203	ENSSBOG00000023981	TNRC6C	100	48.811	Saimiri_boliviensis_boliviensis
ENSPFOG00000012560	tnrc6c1	76	60.676	ENSSHAG00000018330	-	100	63.191	Sarcophilus_harrisii
ENSPFOG00000012560	tnrc6c1	99	58.487	ENSSFOG00015006475	tnrc6c1	100	57.291	Scleropages_formosus
ENSPFOG00000012560	tnrc6c1	78	61.571	ENSSFOG00015004735	-	99	65.829	Scleropages_formosus
ENSPFOG00000012560	tnrc6c1	92	82.059	ENSSMAG00000012761	tnrc6c1	100	81.892	Scophthalmus_maximus
ENSPFOG00000012560	tnrc6c1	92	84.269	ENSSDUG00000002366	tnrc6c1	98	84.820	Seriola_dumerili
ENSPFOG00000012560	tnrc6c1	99	75.751	ENSSLDG00000025613	tnrc6c1	100	84.601	Seriola_lalandi_dorsalis
ENSPFOG00000012560	tnrc6c1	88	52.174	ENSSARG00000006816	TNRC6C	91	60.905	Sorex_araneus
ENSPFOG00000012560	tnrc6c1	75	86.486	ENSSPUG00000007341	TNRC6C	92	100.000	Sphenodon_punctatus
ENSPFOG00000012560	tnrc6c1	98	83.397	ENSSPAG00000014977	tnrc6c1	98	85.765	Stegastes_partitus
ENSPFOG00000012560	tnrc6c1	97	54.665	ENSSSCG00000034373	TNRC6C	97	49.030	Sus_scrofa
ENSPFOG00000012560	tnrc6c1	96	56.131	ENSTGUG00000007733	TNRC6C	99	49.517	Taeniopygia_guttata
ENSPFOG00000012560	tnrc6c1	99	71.690	ENSTRUG00000011685	tnrc6c1	100	73.903	Takifugu_rubripes
ENSPFOG00000012560	tnrc6c1	99	68.085	ENSTNIG00000005273	tnrc6c1	100	76.686	Tetraodon_nigroviridis
ENSPFOG00000012560	tnrc6c1	97	49.950	ENSTBEG00000005046	TNRC6C	100	49.711	Tupaia_belangeri
ENSPFOG00000012560	tnrc6c1	97	54.735	ENSTTRG00000010828	TNRC6C	99	49.650	Tursiops_truncatus
ENSPFOG00000012560	tnrc6c1	97	52.738	ENSUMAG00000013614	TNRC6C	97	47.672	Ursus_maritimus
ENSPFOG00000012560	tnrc6c1	94	49.293	ENSVPAG00000006765	-	95	52.875	Vicugna_pacos
ENSPFOG00000012560	tnrc6c1	97	58.511	ENSVVUG00000015268	TNRC6C	100	50.474	Vulpes_vulpes
ENSPFOG00000012560	tnrc6c1	96	53.243	ENSXETG00000019470	tnrc6c	97	48.711	Xenopus_tropicalis
ENSPFOG00000012560	tnrc6c1	99	97.209	ENSXMAG00000025971	tnrc6c1	100	97.688	Xiphophorus_maculatus