EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSPFOG00000012664 (Gene tree)
Gene ID
103129699
Gene Symbol
csde1
Alias
-
Full Name
cold shock domain containing E1%2C RNA-binding
Gene Type
protein_coding
Species
Poecilia_formosa
Status
putative
Strand
Plus strand
Length
18918 bases
Position
chrKI520180.1:263331-282248
Accession
ZDB-GENE-030131-8623
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPFOP00000029319CSDPF00313.222.5e-6314
ENSPFOP00000029319CSDPF00313.222.5e-6324
ENSPFOP00000029319CSDPF00313.222.5e-6334
ENSPFOP00000029319CSDPF00313.222.5e-6344
ENSPFOP00000012749CSDPF00313.226.9e-6214
ENSPFOP00000012749CSDPF00313.226.9e-6224
ENSPFOP00000012749CSDPF00313.226.9e-6234
ENSPFOP00000012749CSDPF00313.226.9e-6244
ENSPFOP00000030289CSDPF00313.226.4e-6114
ENSPFOP00000030289CSDPF00313.226.4e-6124
ENSPFOP00000030289CSDPF00313.226.4e-6134
ENSPFOP00000030289CSDPF00313.226.4e-6144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPFOT00000029731-2686-ENSPFOP00000029319694 (aa)-A0A096MD28
ENSPFOT00000012766-4666-ENSPFOP00000012749643 (aa)-A0A087Y3Z6
ENSPFOT00000028928-4681-ENSPFOP00000030289648 (aa)-A0A096MFU8
Gene Model
Click here to download ENSPFOG00000012664's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012664's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPFOG00000012664csde110075.776ENSG00000009307CSDE19788.636Homo_sapiens
ENSPFOG00000012664csde110091.446ENSAPOG00000015538csde19791.446Acanthochromis_polyacanthus
ENSPFOG00000012664csde110074.845ENSAMEG00000017129CSDE19374.811Ailuropoda_melanoleuca
ENSPFOG00000012664csde18991.892ENSACIG00000015175csde110091.892Amphilophus_citrinellus
ENSPFOG00000012664csde110090.824ENSAOCG00000011510csde19790.202Amphiprion_ocellaris
ENSPFOG00000012664csde110091.446ENSAPEG00000007194csde19790.202Amphiprion_percula
ENSPFOG00000012664csde110089.580ENSATEG00000003864csde19789.425Anabas_testudineus
ENSPFOG00000012664csde110078.261ENSAPLG00000008797CSDE19977.795Anas_platyrhynchos
ENSPFOG00000012664csde110079.193ENSACAG00000003120CSDE19978.582Anolis_carolinensis
ENSPFOG00000012664csde19063.605ENSANAG00000028396-9163.605Aotus_nancymaae
ENSPFOG00000012664csde110075.621ENSANAG00000024665CSDE19478.767Aotus_nancymaae
ENSPFOG00000012664csde110090.202ENSACLG00000013296csde19789.736Astatotilapia_calliptera
ENSPFOG00000012664csde110085.581ENSAMXG00000007436csde19785.271Astyanax_mexicanus
ENSPFOG00000012664csde110075.155ENSBTAG00000000678CSDE19974.845Bos_taurus
ENSPFOG00000012664csde110075.621ENSCJAG00000012565CSDE19475.155Callithrix_jacchus
ENSPFOG00000012664csde19875.955ENSCAFG00000009618CSDE19376.651Canis_familiaris
ENSPFOG00000012664csde110075.776ENSCAFG00020000481CSDE19975.311Canis_lupus_dingo
ENSPFOG00000012664csde110075.311ENSCHIG00000017250CSDE19974.845Capra_hircus
ENSPFOG00000012664csde110075.776ENSTSYG00000003747CSDE19975.311Carlito_syrichta
ENSPFOG00000012664csde19973.770ENSCAPG00000015128CSDE19873.770Cavia_aperea
ENSPFOG00000012664csde110074.384ENSCPOG00000040388CSDE19973.892Cavia_porcellus
ENSPFOG00000012664csde19753.034ENSCCAG00000030878-9152.723Cebus_capucinus
ENSPFOG00000012664csde110075.621ENSCCAG00000036794CSDE19975.155Cebus_capucinus
ENSPFOG00000012664csde19555.213ENSCCAG00000033677-9955.213Cebus_capucinus
ENSPFOG00000012664csde110075.776ENSCATG00000036962CSDE19675.311Cercocebus_atys
ENSPFOG00000012664csde110075.932ENSCLAG00000006618CSDE19975.466Chinchilla_lanigera
ENSPFOG00000012664csde110075.776ENSCSAG00000001658CSDE19475.311Chlorocebus_sabaeus
ENSPFOG00000012664csde19979.819ENSCHOG00000000918CSDE17179.217Choloepus_hoffmanni
ENSPFOG00000012664csde110078.727ENSCPBG00000016547CSDE19978.120Chrysemys_picta_bellii
ENSPFOG00000012664csde19941.704ENSCING00000014465-9641.704Ciona_intestinalis
ENSPFOG00000012664csde19740.923ENSCSAVG00000008100-10039.574Ciona_savignyi
ENSPFOG00000012664csde110069.732ENSCANG00000031069-9380.451Colobus_angolensis_palliatus
ENSPFOG00000012664csde110075.776ENSCANG00000035096CSDE19675.311Colobus_angolensis_palliatus
ENSPFOG00000012664csde110075.466ENSCGRG00001016833-9974.845Cricetulus_griseus_chok1gshd
ENSPFOG00000012664csde19761.316ENSCGRG00001014011-8459.578Cricetulus_griseus_chok1gshd
ENSPFOG00000012664csde19771.461ENSCGRG00000002225-10071.145Cricetulus_griseus_crigri
ENSPFOG00000012664csde19770.079ENSCGRG00000005831-9870.079Cricetulus_griseus_crigri
ENSPFOG00000012664csde110088.958ENSCSEG00000002620csde19788.025Cynoglossus_semilaevis
ENSPFOG00000012664csde110096.423ENSCVAG00000001344csde19796.423Cyprinodon_variegatus
ENSPFOG00000012664csde110085.404ENSDARG00000074758csde19793.000Danio_rerio
ENSPFOG00000012664csde110075.969ENSDNOG00000010287-9276.018Dasypus_novemcinctus
ENSPFOG00000012664csde110075.776ENSDORG00000011609Csde19975.680Dipodomys_ordii
ENSPFOG00000012664csde19946.571FBgn0263352Unr8148.214Drosophila_melanogaster
ENSPFOG00000012664csde18865.878ENSETEG00000006280-9967.170Echinops_telfairi
ENSPFOG00000012664csde110059.006ENSETEG00000013678-9758.552Echinops_telfairi
ENSPFOG00000012664csde19552.951ENSETEG00000007109-9952.787Echinops_telfairi
ENSPFOG00000012664csde19780.488ENSETEG00000002491-7180.488Echinops_telfairi
ENSPFOG00000012664csde19955.692ENSEBUG00000008647csde19754.018Eptatretus_burgeri
ENSPFOG00000012664csde110075.932ENSEASG00005006284CSDE19975.466Equus_asinus_asinus
ENSPFOG00000012664csde110075.932ENSECAG00000020885CSDE19975.466Equus_caballus
ENSPFOG00000012664csde19183.246ENSEEUG00000006286CSDE16783.246Erinaceus_europaeus
ENSPFOG00000012664csde110086.196ENSELUG00000015507csde19784.448Esox_lucius
ENSPFOG00000012664csde110075.932ENSFCAG00000029266CSDE19975.466Felis_catus
ENSPFOG00000012664csde110078.727ENSFALG00000003407CSDE19978.261Ficedula_albicollis
ENSPFOG00000012664csde110075.311ENSFDAG00000007882CSDE19975.378Fukomys_damarensis
ENSPFOG00000012664csde110096.914ENSFHEG00000010799csde19796.267Fundulus_heteroclitus
ENSPFOG00000012664csde19986.625ENSGMOG00000012731csde19786.159Gadus_morhua
ENSPFOG00000012664csde110077.188ENSGALG00000002139CSDE19977.188Gallus_gallus
ENSPFOG00000012664csde19397.543ENSGAFG00000005241csde19298.370Gambusia_affinis
ENSPFOG00000012664csde19990.031ENSGACG00000004544csde19789.408Gasterosteus_aculeatus
ENSPFOG00000012664csde110078.571ENSGAGG00000017685CSDE19978.106Gopherus_agassizii
ENSPFOG00000012664csde110075.776ENSGGOG00000002164CSDE19976.316Gorilla_gorilla
ENSPFOG00000012664csde110090.824ENSHBUG00000020315csde19790.447Haplochromis_burtoni
ENSPFOG00000012664csde110067.391ENSHGLG00000009620-9868.156Heterocephalus_glaber_female
ENSPFOG00000012664csde110066.925ENSHGLG00000003829-9966.460Heterocephalus_glaber_female
ENSPFOG00000012664csde19965.463ENSHGLG00000007471-9667.625Heterocephalus_glaber_female
ENSPFOG00000012664csde19959.510ENSHGLG00000000650-9859.510Heterocephalus_glaber_female
ENSPFOG00000012664csde19665.207ENSHGLG00000010039-10063.877Heterocephalus_glaber_female
ENSPFOG00000012664csde110066.615ENSHGLG00000008555-9966.149Heterocephalus_glaber_female
ENSPFOG00000012664csde110063.199ENSHGLG00000019549-9963.676Heterocephalus_glaber_female
ENSPFOG00000012664csde110060.809ENSHGLG00100001846-9960.342Heterocephalus_glaber_male
ENSPFOG00000012664csde19659.908ENSHGLG00100004833-10059.251Heterocephalus_glaber_male
ENSPFOG00000012664csde110061.646ENSHGLG00100012072-9862.783Heterocephalus_glaber_male
ENSPFOG00000012664csde19964.899ENSHGLG00100007287-9667.068Heterocephalus_glaber_male
ENSPFOG00000012664csde19963.506ENSHGLG00100002245-9863.506Heterocephalus_glaber_male
ENSPFOG00000012664csde19664.977ENSHGLG00100006910-10063.656Heterocephalus_glaber_male
ENSPFOG00000012664csde19265.371ENSHGLG00100004195-9664.974Heterocephalus_glaber_male
ENSPFOG00000012664csde110075.621ENSHGLG00100019438-9975.155Heterocephalus_glaber_male
ENSPFOG00000012664csde110090.047ENSHCOG00000004158csde19789.114Hippocampus_comes
ENSPFOG00000012664csde110084.031ENSIPUG00000000355csde19784.465Ictalurus_punctatus
ENSPFOG00000012664csde18960.839ENSSTOG00000032722-9860.839Ictidomys_tridecemlineatus
ENSPFOG00000012664csde110063.608ENSSTOG00000030994-9763.608Ictidomys_tridecemlineatus
ENSPFOG00000012664csde110075.466ENSJJAG00000019571Csde19975.378Jaculus_jaculus
ENSPFOG00000012664csde110092.427ENSKMAG00000005685csde19992.427Kryptolebias_marmoratus
ENSPFOG00000012664csde110091.291ENSLBEG00000014770csde19790.202Labrus_bergylta
ENSPFOG00000012664csde110075.319ENSLACG00000018452CSDE19975.000Latimeria_chalumnae
ENSPFOG00000012664csde110085.381ENSLOCG00000010413csde19184.603Lepisosteus_oculatus
ENSPFOG00000012664csde110075.466ENSLAFG00000007150CSDE19575.000Loxodonta_africana
ENSPFOG00000012664csde110075.776ENSMFAG00000003674CSDE19975.311Macaca_fascicularis
ENSPFOG00000012664csde110075.776ENSMMUG00000001974CSDE19975.947Macaca_mulatta
ENSPFOG00000012664csde110075.776ENSMNEG00000045247CSDE19675.311Macaca_nemestrina
ENSPFOG00000012664csde110075.466ENSMLEG00000038673CSDE19475.000Mandrillus_leucophaeus
ENSPFOG00000012664csde110091.757ENSMAMG00000008821csde19790.669Mastacembelus_armatus
ENSPFOG00000012664csde110090.824ENSMZEG00005021675csde19789.736Maylandia_zebra
ENSPFOG00000012664csde110078.140ENSMGAG00000016381CSDE19977.674Meleagris_gallopavo
ENSPFOG00000012664csde110075.466ENSMAUG00000014031Csde19975.227Mesocricetus_auratus
ENSPFOG00000012664csde110075.776ENSMICG00000002050CSDE19972.297Microcebus_murinus
ENSPFOG00000012664csde110075.466ENSMOCG00000018960Csde19974.845Microtus_ochrogaster
ENSPFOG00000012664csde110091.135ENSMMOG00000015075csde19790.669Mola_mola
ENSPFOG00000012664csde110077.329ENSMODG00000004685CSDE19976.863Monodelphis_domestica
ENSPFOG00000012664csde110090.202ENSMALG00000007132csde19790.047Monopterus_albus
ENSPFOG00000012664csde110075.621MGP_CAROLIEiJ_G0025444Csde19787.671Mus_caroli
ENSPFOG00000012664csde110075.776ENSMUSG00000068823Csde19787.671Mus_musculus
ENSPFOG00000012664csde110075.621MGP_PahariEiJ_G0026888Csde19787.671Mus_pahari
ENSPFOG00000012664csde110075.621MGP_SPRETEiJ_G0026394Csde19787.671Mus_spretus
ENSPFOG00000012664csde19876.496ENSMPUG00000005753CSDE19976.496Mustela_putorius_furo
ENSPFOG00000012664csde110075.428ENSMLUG00000005681CSDE19375.415Myotis_lucifugus
ENSPFOG00000012664csde19651.322ENSNGAG00000012599-10051.322Nannospalax_galili
ENSPFOG00000012664csde110075.311ENSNGAG00000021929Csde19975.076Nannospalax_galili
ENSPFOG00000012664csde110090.202ENSNBRG00000020808csde19789.736Neolamprologus_brichardi
ENSPFOG00000012664csde110075.776ENSNLEG00000004842CSDE19478.425Nomascus_leucogenys
ENSPFOG00000012664csde19877.994ENSMEUG00000002677CSDE18277.994Notamacropus_eugenii
ENSPFOG00000012664csde19869.804ENSOPRG00000005002CSDE16370.356Ochotona_princeps
ENSPFOG00000012664csde110075.466ENSODEG00000007383-9975.529Octodon_degus
ENSPFOG00000012664csde19651.860ENSODEG00000005979-9851.204Octodon_degus
ENSPFOG00000012664csde110090.047ENSONIG00000009309csde19789.580Oreochromis_niloticus
ENSPFOG00000012664csde110083.051ENSOANG00000003346-8183.051Ornithorhynchus_anatinus
ENSPFOG00000012664csde110075.311ENSOCUG00000016438CSDE19474.845Oryctolagus_cuniculus
ENSPFOG00000012664csde110088.958ENSORLG00000000707csde19788.647Oryzias_latipes
ENSPFOG00000012664csde110088.647ENSORLG00020005148csde19788.180Oryzias_latipes_hni
ENSPFOG00000012664csde110088.802ENSORLG00015019415csde19788.491Oryzias_latipes_hsok
ENSPFOG00000012664csde110087.869ENSOMEG00000015656csde19788.647Oryzias_melastigma
ENSPFOG00000012664csde110075.776ENSOGAG00000012127CSDE19375.716Otolemur_garnettii
ENSPFOG00000012664csde110075.311ENSOARG00000020034CSDE19375.264Ovis_aries
ENSPFOG00000012664csde110075.776ENSPPAG00000025861CSDE19975.311Pan_paniscus
ENSPFOG00000012664csde110075.932ENSPPRG00000006747CSDE19475.466Panthera_pardus
ENSPFOG00000012664csde110075.932ENSPTIG00000015468CSDE19975.466Panthera_tigris_altaica
ENSPFOG00000012664csde110075.776ENSPTRG00000033721CSDE19975.311Pan_troglodytes
ENSPFOG00000012664csde110075.776ENSPANG00000018873CSDE19975.311Papio_anubis
ENSPFOG00000012664csde110084.603ENSPKIG00000009459csde19783.981Paramormyrops_kingsleyae
ENSPFOG00000012664csde19681.818ENSPSIG00000003823CSDE19481.818Pelodiscus_sinensis
ENSPFOG00000012664csde110087.092ENSPMGG00000000772csde19786.936Periophthalmus_magnuspinnatus
ENSPFOG00000012664csde110075.621ENSPEMG00000020357-9975.378Peromyscus_maniculatus_bairdii
ENSPFOG00000012664csde110077.484ENSPCIG00000022587CSDE19977.019Phascolarctos_cinereus
ENSPFOG00000012664csde19992.044ENSPLAG00000017680csde19592.620Poecilia_latipinna
ENSPFOG00000012664csde19892.516ENSPMEG00000005094csde19593.395Poecilia_mexicana
ENSPFOG00000012664csde110098.765ENSPREG00000011631csde19798.160Poecilia_reticulata
ENSPFOG00000012664csde110075.621ENSPPYG00000000996CSDE19975.155Pongo_abelii
ENSPFOG00000012664csde110076.019ENSPCAG00000014368CSDE17875.549Procavia_capensis
ENSPFOG00000012664csde110075.932ENSPCOG00000017893CSDE19975.466Propithecus_coquereli
ENSPFOG00000012664csde18973.305ENSPCOG00000008223-9273.305Propithecus_coquereli
ENSPFOG00000012664csde110069.720ENSPVAG00000008225CSDE19469.255Pteropus_vampyrus
ENSPFOG00000012664csde110090.824ENSPNYG00000013745csde19790.447Pundamilia_nyererei
ENSPFOG00000012664csde110086.512ENSPNAG00000001958csde19785.891Pygocentrus_nattereri
ENSPFOG00000012664csde110075.466ENSRNOG00000061058Csde19974.845Rattus_norvegicus
ENSPFOG00000012664csde110070.433ENSRBIG00000038966-9370.633Rhinopithecus_bieti
ENSPFOG00000012664csde110072.826ENSRBIG00000038088-9972.769Rhinopithecus_bieti
ENSPFOG00000012664csde110075.776ENSRROG00000043101CSDE19675.311Rhinopithecus_roxellana
ENSPFOG00000012664csde110075.621ENSSBOG00000035592CSDE19475.680Saimiri_boliviensis_boliviensis
ENSPFOG00000012664csde110077.484ENSSHAG00000009831CSDE19977.019Sarcophilus_harrisii
ENSPFOG00000012664csde110084.161ENSSFOG00015007498csde19984.161Scleropages_formosus
ENSPFOG00000012664csde110090.824ENSSMAG00000007203csde19789.736Scophthalmus_maximus
ENSPFOG00000012664csde110091.783ENSSDUG00000015380csde19791.291Seriola_dumerili
ENSPFOG00000012664csde110091.757ENSSLDG00000008819csde19791.291Seriola_lalandi_dorsalis
ENSPFOG00000012664csde110075.311ENSSARG00000000738CSDE19375.264Sorex_araneus
ENSPFOG00000012664csde110078.882ENSSPUG00000008714CSDE19978.274Sphenodon_punctatus
ENSPFOG00000012664csde110092.691ENSSPAG00000000716csde19791.446Stegastes_partitus
ENSPFOG00000012664csde110076.087ENSSSCG00000006752CSDE19975.621Sus_scrofa
ENSPFOG00000012664csde110077.709ENSTGUG00000000972CSDE19977.245Taeniopygia_guttata
ENSPFOG00000012664csde110084.448ENSTRUG00000007996csde19784.292Takifugu_rubripes
ENSPFOG00000012664csde19197.059ENSTNIG00000010878csde19197.059Tetraodon_nigroviridis
ENSPFOG00000012664csde19181.818ENSTBEG00000011880-5981.818Tupaia_belangeri
ENSPFOG00000012664csde110075.155ENSTTRG00000015583CSDE19375.113Tursiops_truncatus
ENSPFOG00000012664csde18871.377ENSUAMG00000024289-9972.165Ursus_americanus
ENSPFOG00000012664csde19183.696ENSUAMG00000021779-9783.498Ursus_americanus
ENSPFOG00000012664csde110070.807ENSUMAG00000009720-9570.846Ursus_maritimus
ENSPFOG00000012664csde19770.813ENSUMAG00000011714-9970.657Ursus_maritimus
ENSPFOG00000012664csde110079.276ENSVPAG00000000749CSDE17780.208Vicugna_pacos
ENSPFOG00000012664csde19274.872ENSVVUG00000009890CSDE19374.872Vulpes_vulpes
ENSPFOG00000012664csde110076.816ENSXETG00000021448csde19876.352Xenopus_tropicalis
ENSPFOG00000012664csde19397.598ENSXCOG00000000035csde18598.876Xiphophorus_couchianus
ENSPFOG00000012664csde110098.445ENSXMAG00000009080csde19798.445Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us