EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000012675 (Gene tree)
Gene ID: 103148878
Gene Symbol: rbm4.1
Alias: -
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 4761 bases
Position: chrKI519824.1:472011-476771
Accession: 103148878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000027153	zf-CCHC	PF00098.23	5.4e-08	1	1
ENSPFOP00000012671	zf-CCHC	PF00098.23	5.4e-08	1	1
ENSPFOP00000027153	RRM_5	PF13893.6	2e-08	1	1
ENSPFOP00000012671	RRM_5	PF13893.6	2.2e-08	1	1
ENSPFOP00000027153	RRM_1	PF00076.22	7.8e-32	1	2
ENSPFOP00000027153	RRM_1	PF00076.22	7.8e-32	2	2
ENSPFOP00000012671	RRM_1	PF00076.22	8.5e-32	1	2
ENSPFOP00000012671	RRM_1	PF00076.22	8.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000012688	-	2943	XM_007567850	ENSPFOP00000012671	419 (aa)	XP_007567912	A0A087Y3R8
ENSPFOT00000030528	-	1545	-	ENSPFOP00000027153	410 (aa)	-	A0A096M6W2

Gene Model

Click here to download ENSPFOG00000012675's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012675's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000012675	rbm4.1	66	53.333	ENSPFOG00000024094	rbm4.3	86	53.333
ENSPFOG00000012675	rbm4.1	99	46.875	ENSPFOG00000012685	-	99	48.077
ENSPFOG00000012675	rbm4.1	66	53.333	ENSPFOG00000006836	rbm4.3	83	53.333
ENSPFOG00000012675	rbm4.1	65	52.941	ENSPFOG00000006821	rbm4.3	97	52.941

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000012675	rbm4.1	100	78.487	ENSAPOG00000012353	rbm4.1	100	79.196	Acanthochromis_polyacanthus
ENSPFOG00000012675	rbm4.1	100	77.541	ENSACIG00000016482	rbm4.1	100	78.014	Amphilophus_citrinellus
ENSPFOG00000012675	rbm4.1	100	79.196	ENSAOCG00000010915	rbm4.1	100	79.905	Amphiprion_ocellaris
ENSPFOG00000012675	rbm4.1	100	79.196	ENSAPEG00000009494	rbm4.1	100	79.905	Amphiprion_percula
ENSPFOG00000012675	rbm4.1	100	78.723	ENSATEG00000001904	rbm4.1	100	79.433	Anabas_testudineus
ENSPFOG00000012675	rbm4.1	96	48.166	ENSACLG00000007740	-	94	49.624	Astatotilapia_calliptera
ENSPFOG00000012675	rbm4.1	100	76.832	ENSACLG00000007722	rbm4.1	100	77.305	Astatotilapia_calliptera
ENSPFOG00000012675	rbm4.1	100	60.993	ENSAMXG00000036611	rbm4.1	100	61.702	Astyanax_mexicanus
ENSPFOG00000012675	rbm4.1	100	69.668	ENSCSEG00000014365	rbm4.1	100	69.668	Cynoglossus_semilaevis
ENSPFOG00000012675	rbm4.1	94	49.751	ENSCSEG00000014359	-	94	49.510	Cynoglossus_semilaevis
ENSPFOG00000012675	rbm4.1	100	85.680	ENSCVAG00000019349	rbm4.1	100	86.396	Cyprinodon_variegatus
ENSPFOG00000012675	rbm4.1	100	64.706	ENSDARG00000036386	rbm4.1	100	65.647	Danio_rerio
ENSPFOG00000012675	rbm4.1	100	47.754	ENSDARG00000055080	rbm4.2	100	49.764	Danio_rerio
ENSPFOG00000012675	rbm4.1	100	61.882	ENSELUG00000013205	rbm4.1	100	62.676	Esox_lucius
ENSPFOG00000012675	rbm4.1	100	86.874	ENSFHEG00000022926	rbm4.1	100	86.874	Fundulus_heteroclitus
ENSPFOG00000012675	rbm4.1	100	63.294	ENSGMOG00000007464	rbm4.1	100	65.802	Gadus_morhua
ENSPFOG00000012675	rbm4.1	92	49.105	ENSGMOG00000007455	-	92	51.786	Gadus_morhua
ENSPFOG00000012675	rbm4.1	100	99.761	ENSGAFG00000019302	rbm4.1	100	99.761	Gambusia_affinis
ENSPFOG00000012675	rbm4.1	99	87.500	ENSGACG00000000822	rbm4.1	100	87.500	Gasterosteus_aculeatus
ENSPFOG00000012675	rbm4.1	94	50.754	ENSGACG00000000821	-	94	50.743	Gasterosteus_aculeatus
ENSPFOG00000012675	rbm4.1	100	76.832	ENSHBUG00000011610	rbm4.1	100	77.305	Haplochromis_burtoni
ENSPFOG00000012675	rbm4.1	92	66.150	ENSHCOG00000011403	rbm4.1	95	67.010	Hippocampus_comes
ENSPFOG00000012675	rbm4.1	100	60.909	ENSIPUG00000022931	rbm4.1	100	62.132	Ictalurus_punctatus
ENSPFOG00000012675	rbm4.1	100	49.644	ENSIPUG00000022937	rbm4.2	100	50.355	Ictalurus_punctatus
ENSPFOG00000012675	rbm4.1	99	43.807	ENSKMAG00000006528	-	99	45.497	Kryptolebias_marmoratus
ENSPFOG00000012675	rbm4.1	100	76.777	ENSKMAG00000006556	rbm4.1	100	77.488	Kryptolebias_marmoratus
ENSPFOG00000012675	rbm4.1	100	75.592	ENSLBEG00000019782	rbm4.1	100	75.592	Labrus_bergylta
ENSPFOG00000012675	rbm4.1	94	50.000	ENSLBEG00000019756	-	90	62.179	Labrus_bergylta
ENSPFOG00000012675	rbm4.1	99	52.123	ENSMAMG00000001760	-	100	52.123	Mastacembelus_armatus
ENSPFOG00000012675	rbm4.1	100	78.487	ENSMAMG00000001765	rbm4.1	100	79.196	Mastacembelus_armatus
ENSPFOG00000012675	rbm4.1	100	76.832	ENSMZEG00005009205	rbm4.1	100	77.305	Maylandia_zebra
ENSPFOG00000012675	rbm4.1	100	77.412	ENSMMOG00000020479	rbm4.1	100	77.412	Mola_mola
ENSPFOG00000012675	rbm4.1	94	52.750	ENSMALG00000020557	-	94	52.750	Monopterus_albus
ENSPFOG00000012675	rbm4.1	100	77.962	ENSMALG00000020544	rbm4.1	100	78.673	Monopterus_albus
ENSPFOG00000012675	rbm4.1	100	77.069	ENSNBRG00000017755	rbm4.1	100	77.541	Neolamprologus_brichardi
ENSPFOG00000012675	rbm4.1	100	77.069	ENSONIG00000015730	rbm4.1	100	77.541	Oreochromis_niloticus
ENSPFOG00000012675	rbm4.1	100	75.714	ENSORLG00000012496	rbm4.1	100	75.714	Oryzias_latipes
ENSPFOG00000012675	rbm4.1	100	75.714	ENSORLG00020012454	rbm4.1	100	75.714	Oryzias_latipes_hni
ENSPFOG00000012675	rbm4.1	100	75.952	ENSORLG00015013678	rbm4.1	100	75.952	Oryzias_latipes_hsok
ENSPFOG00000012675	rbm4.1	100	76.190	ENSOMEG00000001001	rbm4.1	100	76.190	Oryzias_melastigma
ENSPFOG00000012675	rbm4.1	100	59.302	ENSPKIG00000020805	rbm4.1	85	80.435	Paramormyrops_kingsleyae
ENSPFOG00000012675	rbm4.1	100	100.000	ENSPLAG00000018572	rbm4.1	100	100.000	Poecilia_latipinna
ENSPFOG00000012675	rbm4.1	100	100.000	ENSPMEG00000006290	rbm4.1	100	100.000	Poecilia_mexicana
ENSPFOG00000012675	rbm4.1	100	100.000	ENSPREG00000003724	rbm4.1	100	100.000	Poecilia_reticulata
ENSPFOG00000012675	rbm4.1	99	45.324	ENSPREG00000003764	-	99	45.215	Poecilia_reticulata
ENSPFOG00000012675	rbm4.1	100	76.832	ENSPNYG00000004662	rbm4.1	100	77.305	Pundamilia_nyererei
ENSPFOG00000012675	rbm4.1	100	50.236	ENSPNAG00000013057	rbm4.2	100	49.645	Pygocentrus_nattereri
ENSPFOG00000012675	rbm4.1	100	63.232	ENSPNAG00000002539	rbm4.1	100	65.035	Pygocentrus_nattereri
ENSPFOG00000012675	rbm4.1	100	61.111	ENSSFOG00015021996	sf1	100	62.558	Scleropages_formosus
ENSPFOG00000012675	rbm4.1	100	74.645	ENSSMAG00000007571	rbm4.1	100	74.408	Scophthalmus_maximus
ENSPFOG00000012675	rbm4.1	100	77.778	ENSSDUG00000003925	rbm4.1	100	79.196	Seriola_dumerili
ENSPFOG00000012675	rbm4.1	94	53.401	ENSSDUG00000003936	-	94	54.386	Seriola_dumerili
ENSPFOG00000012675	rbm4.1	94	52.010	ENSSLDG00000013157	-	94	52.393	Seriola_lalandi_dorsalis
ENSPFOG00000012675	rbm4.1	100	77.778	ENSSLDG00000013147	rbm4.1	100	79.196	Seriola_lalandi_dorsalis
ENSPFOG00000012675	rbm4.1	99	48.210	ENSSPAG00000019046	-	99	47.837	Stegastes_partitus
ENSPFOG00000012675	rbm4.1	100	78.538	ENSSPAG00000019053	rbm4.1	100	80.189	Stegastes_partitus
ENSPFOG00000012675	rbm4.1	99	47.381	ENSTRUG00000013328	-	99	47.242	Takifugu_rubripes
ENSPFOG00000012675	rbm4.1	100	71.801	ENSTRUG00000013334	rbm4.1	100	72.038	Takifugu_rubripes
ENSPFOG00000012675	rbm4.1	96	48.522	ENSTNIG00000000316	-	96	48.780	Tetraodon_nigroviridis
ENSPFOG00000012675	rbm4.1	81	83.256	ENSTNIG00000004821	rbm4.1	100	56.341	Tetraodon_nigroviridis
ENSPFOG00000012675	rbm4.1	100	99.523	ENSXCOG00000003731	rbm4.1	100	99.523	Xiphophorus_couchianus
ENSPFOG00000012675	rbm4.1	99	47.837	ENSXMAG00000008059	-	95	73.006	Xiphophorus_maculatus
ENSPFOG00000012675	rbm4.1	100	99.761	ENSXMAG00000008069	rbm4.1	100	99.761	Xiphophorus_maculatus