EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000012870 (Gene tree)
Gene ID: 103146681
Gene Symbol: cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 15120 bases
Position: chrKI519775.1:669348-684467
Accession: 103146681
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000013059	CPSF_A	PF03178.15	1.1e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000013077	-	5999	-	ENSPFOP00000013059	1470 (aa)	XP_007564752	A0A087Y4V6

Gene Model

Click here to download ENSPFOG00000012870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012870's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000012870	cpsf1	100	76.387	ENSG00000071894	CPSF1	100	76.389	Homo_sapiens
ENSPFOG00000012870	cpsf1	100	90.965	ENSAPOG00000019621	cpsf1	100	90.761	Acanthochromis_polyacanthus
ENSPFOG00000012870	cpsf1	97	75.593	ENSAMEG00000005557	CPSF1	99	75.453	Ailuropoda_melanoleuca
ENSPFOG00000012870	cpsf1	100	86.373	ENSACIG00000006112	cpsf1	100	86.712	Amphilophus_citrinellus
ENSPFOG00000012870	cpsf1	100	88.100	ENSAOCG00000007120	cpsf1	100	87.677	Amphiprion_ocellaris
ENSPFOG00000012870	cpsf1	100	88.911	ENSAPEG00000005755	cpsf1	100	88.485	Amphiprion_percula
ENSPFOG00000012870	cpsf1	100	89.756	ENSATEG00000011097	cpsf1	100	89.891	Anabas_testudineus
ENSPFOG00000012870	cpsf1	93	73.149	ENSACAG00000009655	CPSF1	100	73.004	Anolis_carolinensis
ENSPFOG00000012870	cpsf1	100	76.522	ENSANAG00000036514	CPSF1	100	76.455	Aotus_nancymaae
ENSPFOG00000012870	cpsf1	99	90.261	ENSACLG00000012231	cpsf1	99	89.689	Astatotilapia_calliptera
ENSPFOG00000012870	cpsf1	100	76.471	ENSAMXG00000008485	cpsf1	100	76.268	Astyanax_mexicanus
ENSPFOG00000012870	cpsf1	100	75.548	ENSBTAG00000008355	CPSF1	100	76.404	Bos_taurus
ENSPFOG00000012870	cpsf1	100	31.865	WBGene00022301	cpsf-1	99	40.395	Caenorhabditis_elegans
ENSPFOG00000012870	cpsf1	100	76.590	ENSCJAG00000021421	CPSF1	100	76.387	Callithrix_jacchus
ENSPFOG00000012870	cpsf1	97	76.907	ENSCAFG00000001600	CPSF1	100	76.290	Canis_familiaris
ENSPFOG00000012870	cpsf1	100	76.419	ENSCAFG00020020821	CPSF1	100	76.486	Canis_lupus_dingo
ENSPFOG00000012870	cpsf1	100	73.460	ENSCHIG00000015833	CPSF1	100	73.189	Capra_hircus
ENSPFOG00000012870	cpsf1	100	76.861	ENSTSYG00000028560	CPSF1	100	77.315	Carlito_syrichta
ENSPFOG00000012870	cpsf1	97	76.031	ENSCAPG00000014921	CPSF1	99	76.031	Cavia_aperea
ENSPFOG00000012870	cpsf1	100	75.372	ENSCPOG00000011448	CPSF1	100	75.372	Cavia_porcellus
ENSPFOG00000012870	cpsf1	100	76.658	ENSCCAG00000037658	CPSF1	100	76.606	Cebus_capucinus
ENSPFOG00000012870	cpsf1	100	76.252	ENSCATG00000037234	CPSF1	99	77.910	Cercocebus_atys
ENSPFOG00000012870	cpsf1	100	76.642	ENSCLAG00000012166	CPSF1	100	76.574	Chinchilla_lanigera
ENSPFOG00000012870	cpsf1	100	76.658	ENSCSAG00000008502	CPSF1	100	76.319	Chlorocebus_sabaeus
ENSPFOG00000012870	cpsf1	99	78.811	ENSCPBG00000018910	CPSF1	96	78.879	Chrysemys_picta_bellii
ENSPFOG00000012870	cpsf1	96	48.034	ENSCING00000000514	-	100	48.034	Ciona_intestinalis
ENSPFOG00000012870	cpsf1	99	48.246	ENSCSAVG00000002293	-	99	50.233	Ciona_savignyi
ENSPFOG00000012870	cpsf1	98	73.633	ENSCANG00000032760	CPSF1	100	76.852	Colobus_angolensis_palliatus
ENSPFOG00000012870	cpsf1	100	76.236	ENSCGRG00001016344	Cpsf1	100	76.168	Cricetulus_griseus_chok1gshd
ENSPFOG00000012870	cpsf1	100	74.475	ENSCGRG00000003118	Cpsf1	100	74.408	Cricetulus_griseus_crigri
ENSPFOG00000012870	cpsf1	100	84.339	ENSCSEG00000013464	cpsf1	99	87.372	Cynoglossus_semilaevis
ENSPFOG00000012870	cpsf1	86	91.098	ENSCVAG00000014059	cpsf1	100	86.574	Cyprinodon_variegatus
ENSPFOG00000012870	cpsf1	100	84.563	ENSDARG00000034178	cpsf1	100	84.089	Danio_rerio
ENSPFOG00000012870	cpsf1	60	74.479	ENSDNOG00000043654	CPSF1	97	74.479	Dasypus_novemcinctus
ENSPFOG00000012870	cpsf1	97	76.734	ENSDORG00000006278	Cpsf1	99	76.734	Dipodomys_ordii
ENSPFOG00000012870	cpsf1	100	43.857	FBgn0024698	Cpsf160	100	43.828	Drosophila_melanogaster
ENSPFOG00000012870	cpsf1	81	81.208	ENSETEG00000006022	CPSF1	83	81.208	Echinops_telfairi
ENSPFOG00000012870	cpsf1	100	76.622	ENSEASG00005010774	CPSF1	100	76.554	Equus_asinus_asinus
ENSPFOG00000012870	cpsf1	100	76.554	ENSECAG00000022209	CPSF1	100	76.486	Equus_caballus
ENSPFOG00000012870	cpsf1	100	76.367	ENSEEUG00000000471	CPSF1	100	76.435	Erinaceus_europaeus
ENSPFOG00000012870	cpsf1	100	84.140	ENSELUG00000012271	cpsf1	100	83.946	Esox_lucius
ENSPFOG00000012870	cpsf1	100	76.777	ENSFDAG00000016060	CPSF1	100	76.777	Fukomys_damarensis
ENSPFOG00000012870	cpsf1	100	92.297	ENSFHEG00000016801	cpsf1	100	92.230	Fundulus_heteroclitus
ENSPFOG00000012870	cpsf1	100	84.257	ENSGMOG00000000796	cpsf1	100	84.527	Gadus_morhua
ENSPFOG00000012870	cpsf1	94	93.363	ENSGAFG00000018890	cpsf1	99	93.363	Gambusia_affinis
ENSPFOG00000012870	cpsf1	100	87.466	ENSGACG00000008703	cpsf1	100	87.264	Gasterosteus_aculeatus
ENSPFOG00000012870	cpsf1	100	76.165	ENSGAGG00000004276	CPSF1	98	80.098	Gopherus_agassizii
ENSPFOG00000012870	cpsf1	100	76.371	ENSGGOG00000016185	CPSF1	100	76.389	Gorilla_gorilla
ENSPFOG00000012870	cpsf1	100	88.299	ENSHBUG00000018900	cpsf1	100	88.367	Haplochromis_burtoni
ENSPFOG00000012870	cpsf1	100	76.845	ENSHGLG00000016139	CPSF1	100	76.845	Heterocephalus_glaber_female
ENSPFOG00000012870	cpsf1	100	76.777	ENSHGLG00100009750	CPSF1	100	76.777	Heterocephalus_glaber_male
ENSPFOG00000012870	cpsf1	100	87.288	ENSHCOG00000018509	cpsf1	100	87.627	Hippocampus_comes
ENSPFOG00000012870	cpsf1	100	80.460	ENSIPUG00000011259	cpsf1	100	80.149	Ictalurus_punctatus
ENSPFOG00000012870	cpsf1	97	76.045	ENSSTOG00000009957	CPSF1	99	76.045	Ictidomys_tridecemlineatus
ENSPFOG00000012870	cpsf1	100	76.574	ENSJJAG00000023002	Cpsf1	100	76.574	Jaculus_jaculus
ENSPFOG00000012870	cpsf1	91	94.984	ENSKMAG00000001940	cpsf1	99	94.984	Kryptolebias_marmoratus
ENSPFOG00000012870	cpsf1	100	88.571	ENSLBEG00000003601	cpsf1	100	88.639	Labrus_bergylta
ENSPFOG00000012870	cpsf1	87	77.685	ENSLACG00000000233	CPSF1	92	77.327	Latimeria_chalumnae
ENSPFOG00000012870	cpsf1	100	79.811	ENSLOCG00000008484	cpsf1	100	80.081	Lepisosteus_oculatus
ENSPFOG00000012870	cpsf1	97	76.553	ENSLAFG00000022601	CPSF1	100	76.343	Loxodonta_africana
ENSPFOG00000012870	cpsf1	100	76.252	ENSMFAG00000037013	CPSF1	99	77.910	Macaca_fascicularis
ENSPFOG00000012870	cpsf1	100	76.252	ENSMMUG00000007380	CPSF1	98	78.914	Macaca_mulatta
ENSPFOG00000012870	cpsf1	97	76.643	ENSMNEG00000043564	CPSF1	100	76.389	Macaca_nemestrina
ENSPFOG00000012870	cpsf1	100	76.252	ENSMLEG00000043010	CPSF1	99	77.910	Mandrillus_leucophaeus
ENSPFOG00000012870	cpsf1	100	90.285	ENSMAMG00000003803	cpsf1	100	90.897	Mastacembelus_armatus
ENSPFOG00000012870	cpsf1	100	84.898	ENSMZEG00005001168	cpsf1	100	84.966	Maylandia_zebra
ENSPFOG00000012870	cpsf1	100	76.371	ENSMAUG00000003601	Cpsf1	100	76.371	Mesocricetus_auratus
ENSPFOG00000012870	cpsf1	100	76.642	ENSMICG00000015767	CPSF1	100	76.506	Microcebus_murinus
ENSPFOG00000012870	cpsf1	100	76.574	ENSMOCG00000022758	Cpsf1	100	76.574	Microtus_ochrogaster
ENSPFOG00000012870	cpsf1	100	87.881	ENSMMOG00000021245	cpsf1	100	88.016	Mola_mola
ENSPFOG00000012870	cpsf1	100	76.892	ENSMODG00000010755	CPSF1	100	76.959	Monodelphis_domestica
ENSPFOG00000012870	cpsf1	100	90.075	ENSMALG00000020545	cpsf1	100	89.803	Monopterus_albus
ENSPFOG00000012870	cpsf1	100	76.574	MGP_CAROLIEiJ_G0019936	Cpsf1	100	76.574	Mus_caroli
ENSPFOG00000012870	cpsf1	100	76.506	ENSMUSG00000034022	Cpsf1	100	76.506	Mus_musculus
ENSPFOG00000012870	cpsf1	100	76.642	MGP_PahariEiJ_G0019946	Cpsf1	100	76.642	Mus_pahari
ENSPFOG00000012870	cpsf1	100	76.574	MGP_SPRETEiJ_G0020839	Cpsf1	100	76.574	Mus_spretus
ENSPFOG00000012870	cpsf1	94	77.040	ENSMPUG00000006419	CPSF1	93	76.962	Mustela_putorius_furo
ENSPFOG00000012870	cpsf1	100	76.642	ENSNGAG00000022460	Cpsf1	100	76.439	Nannospalax_galili
ENSPFOG00000012870	cpsf1	94	89.903	ENSNBRG00000000813	cpsf1	97	89.709	Neolamprologus_brichardi
ENSPFOG00000012870	cpsf1	86	66.667	ENSNLEG00000010633	-	100	76.389	Nomascus_leucogenys
ENSPFOG00000012870	cpsf1	83	82.558	ENSMEUG00000014922	CPSF1	85	82.558	Notamacropus_eugenii
ENSPFOG00000012870	cpsf1	61	87.368	ENSOPRG00000004693	-	70	87.368	Ochotona_princeps
ENSPFOG00000012870	cpsf1	100	76.710	ENSODEG00000013995	CPSF1	100	76.710	Octodon_degus
ENSPFOG00000012870	cpsf1	100	88.152	ENSONIG00000007676	cpsf1	100	88.152	Oreochromis_niloticus
ENSPFOG00000012870	cpsf1	59	77.857	ENSOANG00000010716	CPSF1	89	77.857	Ornithorhynchus_anatinus
ENSPFOG00000012870	cpsf1	100	90.959	ENSORLG00000013544	cpsf1	100	90.551	Oryzias_latipes
ENSPFOG00000012870	cpsf1	100	90.891	ENSORLG00020021693	cpsf1	100	90.483	Oryzias_latipes_hni
ENSPFOG00000012870	cpsf1	100	90.823	ENSORLG00015009979	cpsf1	100	90.415	Oryzias_latipes_hsok
ENSPFOG00000012870	cpsf1	100	89.946	ENSOMEG00000011849	cpsf1	100	89.674	Oryzias_melastigma
ENSPFOG00000012870	cpsf1	100	76.928	ENSOGAG00000000315	CPSF1	100	76.996	Otolemur_garnettii
ENSPFOG00000012870	cpsf1	100	76.387	ENSPPAG00000019280	CPSF1	100	77.828	Pan_paniscus
ENSPFOG00000012870	cpsf1	100	76.387	ENSPTRG00000049288	-	100	77.828	Pan_troglodytes
ENSPFOG00000012870	cpsf1	100	75.116	ENSPTRG00000051253	-	100	77.828	Pan_troglodytes
ENSPFOG00000012870	cpsf1	97	76.643	ENSPANG00000015005	CPSF1	100	76.503	Papio_anubis
ENSPFOG00000012870	cpsf1	100	83.491	ENSPKIG00000002582	cpsf1	100	83.666	Paramormyrops_kingsleyae
ENSPFOG00000012870	cpsf1	100	77.095	ENSPCIG00000009035	CPSF1	100	77.162	Phascolarctos_cinereus
ENSPFOG00000012870	cpsf1	100	98.640	ENSPREG00000016307	cpsf1	100	98.640	Poecilia_reticulata
ENSPFOG00000012870	cpsf1	100	69.709	ENSPPYG00000018973	CPSF1	100	69.371	Pongo_abelii
ENSPFOG00000012870	cpsf1	91	83.239	ENSPCAG00000011541	CPSF1	94	83.239	Procavia_capensis
ENSPFOG00000012870	cpsf1	100	73.275	ENSPCOG00000020001	CPSF1	100	76.389	Propithecus_coquereli
ENSPFOG00000012870	cpsf1	91	85.429	ENSPVAG00000006761	CPSF1	91	85.429	Pteropus_vampyrus
ENSPFOG00000012870	cpsf1	100	90.421	ENSPNYG00000004906	cpsf1	100	89.946	Pundamilia_nyererei
ENSPFOG00000012870	cpsf1	100	78.862	ENSPNAG00000024395	cpsf1	100	78.320	Pygocentrus_nattereri
ENSPFOG00000012870	cpsf1	100	76.475	ENSRNOG00000030705	Cpsf1	100	76.475	Rattus_norvegicus
ENSPFOG00000012870	cpsf1	100	76.252	ENSRBIG00000044907	CPSF1	100	76.852	Rhinopithecus_bieti
ENSPFOG00000012870	cpsf1	100	76.319	ENSRROG00000044861	CPSF1	100	76.852	Rhinopithecus_roxellana
ENSPFOG00000012870	cpsf1	97	76.923	ENSSBOG00000027177	CPSF1	99	76.821	Saimiri_boliviensis_boliviensis
ENSPFOG00000012870	cpsf1	100	77.027	ENSSHAG00000006500	CPSF1	100	76.892	Sarcophilus_harrisii
ENSPFOG00000012870	cpsf1	100	81.271	ENSSFOG00015004606	cpsf1	100	84.071	Scleropages_formosus
ENSPFOG00000012870	cpsf1	100	89.606	ENSSMAG00000020547	cpsf1	100	89.810	Scophthalmus_maximus
ENSPFOG00000012870	cpsf1	100	88.035	ENSSDUG00000001100	cpsf1	100	88.443	Seriola_dumerili
ENSPFOG00000012870	cpsf1	100	88.035	ENSSLDG00000003619	cpsf1	100	88.171	Seriola_lalandi_dorsalis
ENSPFOG00000012870	cpsf1	89	73.527	ENSSARG00000003643	CPSF1	92	73.291	Sorex_araneus
ENSPFOG00000012870	cpsf1	96	79.381	ENSSPUG00000014396	CPSF1	100	78.947	Sphenodon_punctatus
ENSPFOG00000012870	cpsf1	100	90.687	ENSSPAG00000005349	cpsf1	100	90.891	Stegastes_partitus
ENSPFOG00000012870	cpsf1	100	75.674	ENSSSCG00000005906	CPSF1	100	75.473	Sus_scrofa
ENSPFOG00000012870	cpsf1	96	88.740	ENSTRUG00000013134	cpsf1	99	88.318	Takifugu_rubripes
ENSPFOG00000012870	cpsf1	100	86.792	ENSTNIG00000014027	cpsf1	100	86.725	Tetraodon_nigroviridis
ENSPFOG00000012870	cpsf1	78	69.444	ENSTBEG00000001756	CPSF1	91	69.281	Tupaia_belangeri
ENSPFOG00000012870	cpsf1	89	82.118	ENSTTRG00000001937	CPSF1	89	82.118	Tursiops_truncatus
ENSPFOG00000012870	cpsf1	97	76.971	ENSUAMG00000006476	CPSF1	98	76.902	Ursus_americanus
ENSPFOG00000012870	cpsf1	100	95.102	ENSXCOG00000003608	cpsf1	100	95.102	Xiphophorus_couchianus
ENSPFOG00000012870	cpsf1	100	94.290	ENSXMAG00000005798	cpsf1	100	94.290	Xiphophorus_maculatus