EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000013222 (Gene tree)
Gene ID: 103134755
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 8313 bases
Position: chrKI519629.1:1519766-1528078
Accession: 103134755
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000013313	Smg4_UPF3	PF03467.15	2.4e-53	1	1
ENSPFOP00000029738	Smg4_UPF3	PF03467.15	2.1e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000025552	-	2261	-	ENSPFOP00000029738	494 (aa)	-	A0A096ME97
ENSPFOT00000013331	-	4337	-	ENSPFOP00000013313	463 (aa)	XP_007547253	A0A087Y5L0

Gene Model

Click here to download ENSPFOG00000013222's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000013222's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000013222	upf3a	50	57.806	ENSPFOG00000017429	upf3b	91	40.950

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000013222	upf3a	90	57.403	ENSG00000169062	UPF3A	92	57.403	Homo_sapiens
ENSPFOG00000013222	upf3a	100	91.361	ENSAPOG00000013484	upf3a	100	91.361	Acanthochromis_polyacanthus
ENSPFOG00000013222	upf3a	84	59.705	ENSAMEG00000004259	UPF3A	93	57.611	Ailuropoda_melanoleuca
ENSPFOG00000013222	upf3a	98	85.924	ENSACIG00000020468	upf3a	99	85.924	Amphilophus_citrinellus
ENSPFOG00000013222	upf3a	51	63.218	ENSACIG00000013582	upf3b	93	48.519	Amphilophus_citrinellus
ENSPFOG00000013222	upf3a	100	92.225	ENSAOCG00000020784	upf3a	100	92.225	Amphiprion_ocellaris
ENSPFOG00000013222	upf3a	65	59.105	ENSAOCG00000000706	upf3b	93	50.115	Amphiprion_ocellaris
ENSPFOG00000013222	upf3a	100	92.225	ENSAPEG00000003519	upf3a	100	92.225	Amphiprion_percula
ENSPFOG00000013222	upf3a	52	67.200	ENSAPEG00000005545	upf3b	93	39.957	Amphiprion_percula
ENSPFOG00000013222	upf3a	100	89.201	ENSATEG00000005843	upf3a	100	89.201	Anabas_testudineus
ENSPFOG00000013222	upf3a	82	67.595	ENSACAG00000001540	UPF3A	94	67.595	Anolis_carolinensis
ENSPFOG00000013222	upf3a	83	46.747	ENSANAG00000025598	-	65	68.116	Aotus_nancymaae
ENSPFOG00000013222	upf3a	92	54.158	ENSANAG00000021713	UPF3A	97	54.158	Aotus_nancymaae
ENSPFOG00000013222	upf3a	82	53.027	ENSANAG00000021894	-	77	71.515	Aotus_nancymaae
ENSPFOG00000013222	upf3a	100	86.694	ENSACLG00000026274	upf3a	100	86.694	Astatotilapia_calliptera
ENSPFOG00000013222	upf3a	99	80.303	ENSAMXG00000002608	upf3a	100	80.303	Astyanax_mexicanus
ENSPFOG00000013222	upf3a	82	53.027	ENSCJAG00000004975	UPF3B	77	70.909	Callithrix_jacchus
ENSPFOG00000013222	upf3a	90	56.081	ENSCJAG00000019102	UPF3A	95	55.459	Callithrix_jacchus
ENSPFOG00000013222	upf3a	84	58.780	ENSCAFG00000006504	UPF3A	86	46.697	Canis_familiaris
ENSPFOG00000013222	upf3a	84	59.314	ENSCAFG00020014268	UPF3A	84	47.140	Canis_lupus_dingo
ENSPFOG00000013222	upf3a	82	47.368	ENSCAFG00020004074	UPF3B	64	73.973	Canis_lupus_dingo
ENSPFOG00000013222	upf3a	83	57.576	ENSCHIG00000008682	UPF3A	85	54.734	Capra_hircus
ENSPFOG00000013222	upf3a	82	45.952	ENSCHIG00000018011	-	53	71.951	Capra_hircus
ENSPFOG00000013222	upf3a	82	52.798	ENSTSYG00000014690	UPF3B	76	66.471	Carlito_syrichta
ENSPFOG00000013222	upf3a	75	53.369	ENSTSYG00000001918	UPF3A	99	52.703	Carlito_syrichta
ENSPFOG00000013222	upf3a	70	61.562	ENSCPOG00000006824	UPF3A	77	61.562	Cavia_porcellus
ENSPFOG00000013222	upf3a	81	38.083	ENSCCAG00000029813	-	52	60.127	Cebus_capucinus
ENSPFOG00000013222	upf3a	93	56.863	ENSCCAG00000018406	UPF3A	96	56.863	Cebus_capucinus
ENSPFOG00000013222	upf3a	88	59.434	ENSCATG00000029733	UPF3A	95	57.942	Cercocebus_atys
ENSPFOG00000013222	upf3a	88	58.124	ENSCSAG00000017388	UPF3A	95	56.739	Chlorocebus_sabaeus
ENSPFOG00000013222	upf3a	80	59.140	ENSCGRG00001017387	Upf3a	87	57.838	Cricetulus_griseus_chok1gshd
ENSPFOG00000013222	upf3a	80	59.140	ENSCGRG00000001468	Upf3a	87	57.838	Cricetulus_griseus_crigri
ENSPFOG00000013222	upf3a	81	53.367	ENSCSEG00000002046	upf3b	84	42.466	Cynoglossus_semilaevis
ENSPFOG00000013222	upf3a	99	85.931	ENSCSEG00000005106	upf3a	99	85.931	Cynoglossus_semilaevis
ENSPFOG00000013222	upf3a	100	90.948	ENSCVAG00000022333	upf3a	100	90.948	Cyprinodon_variegatus
ENSPFOG00000013222	upf3a	99	78.186	ENSDARG00000069297	upf3a	100	78.186	Danio_rerio
ENSPFOG00000013222	upf3a	77	64.033	ENSDNOG00000034391	UPF3A	83	63.859	Dasypus_novemcinctus
ENSPFOG00000013222	upf3a	82	57.576	ENSETEG00000010110	UPF3A	94	53.509	Echinops_telfairi
ENSPFOG00000013222	upf3a	88	58.314	ENSEASG00005021884	UPF3A	89	58.314	Equus_asinus_asinus
ENSPFOG00000013222	upf3a	82	49.750	ENSEASG00005012919	UPF3B	62	71.014	Equus_asinus_asinus
ENSPFOG00000013222	upf3a	88	58.314	ENSECAG00000017141	UPF3A	89	58.314	Equus_caballus
ENSPFOG00000013222	upf3a	82	49.750	ENSECAG00000016947	UPF3B	62	64.286	Equus_caballus
ENSPFOG00000013222	upf3a	98	80.260	ENSELUG00000011050	upf3a	99	80.087	Esox_lucius
ENSPFOG00000013222	upf3a	90	57.658	ENSFCAG00000014602	UPF3A	92	58.108	Felis_catus
ENSPFOG00000013222	upf3a	69	80.488	ENSGMOG00000019615	upf3a	100	80.488	Gadus_morhua
ENSPFOG00000013222	upf3a	83	42.155	ENSGAFG00000000829	upf3b	91	40.132	Gambusia_affinis
ENSPFOG00000013222	upf3a	100	97.198	ENSGAFG00000021170	upf3a	100	97.198	Gambusia_affinis
ENSPFOG00000013222	upf3a	69	83.125	ENSGACG00000001972	upf3a	100	83.125	Gasterosteus_aculeatus
ENSPFOG00000013222	upf3a	82	49.654	ENSGACG00000017435	upf3b	60	71.341	Gasterosteus_aculeatus
ENSPFOG00000013222	upf3a	88	46.973	ENSGGOG00000043074	-	89	41.348	Gorilla_gorilla
ENSPFOG00000013222	upf3a	90	58.140	ENSGGOG00000015428	UPF3A	92	57.859	Gorilla_gorilla
ENSPFOG00000013222	upf3a	82	49.490	ENSGGOG00000041219	-	87	47.826	Gorilla_gorilla
ENSPFOG00000013222	upf3a	100	89.849	ENSHBUG00000011325	upf3a	99	90.043	Haplochromis_burtoni
ENSPFOG00000013222	upf3a	76	56.474	ENSHGLG00000001544	UPF3A	86	56.474	Heterocephalus_glaber_female
ENSPFOG00000013222	upf3a	76	56.474	ENSHGLG00100013244	UPF3A	86	56.474	Heterocephalus_glaber_male
ENSPFOG00000013222	upf3a	94	79.545	ENSHCOG00000013985	upf3a	96	77.655	Hippocampus_comes
ENSPFOG00000013222	upf3a	99	77.970	ENSIPUG00000023450	upf3a	100	77.970	Ictalurus_punctatus
ENSPFOG00000013222	upf3a	100	90.302	ENSKMAG00000004381	upf3a	100	90.302	Kryptolebias_marmoratus
ENSPFOG00000013222	upf3a	98	83.297	ENSLBEG00000021570	upf3a	100	82.495	Labrus_bergylta
ENSPFOG00000013222	upf3a	60	44.575	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSPFOG00000013222	upf3a	97	74.074	ENSLOCG00000002665	upf3a	98	74.074	Lepisosteus_oculatus
ENSPFOG00000013222	upf3a	88	58.057	ENSMFAG00000045016	UPF3A	95	56.180	Macaca_fascicularis
ENSPFOG00000013222	upf3a	87	59.367	ENSMMUG00000007449	UPF3A	95	57.534	Macaca_mulatta
ENSPFOG00000013222	upf3a	85	59.548	ENSMNEG00000036402	UPF3A	83	60.000	Macaca_nemestrina
ENSPFOG00000013222	upf3a	80	61.436	ENSMLEG00000014726	UPF3A	94	59.500	Mandrillus_leucophaeus
ENSPFOG00000013222	upf3a	100	85.386	ENSMAMG00000018364	upf3a	100	85.386	Mastacembelus_armatus
ENSPFOG00000013222	upf3a	100	86.694	ENSMZEG00005021571	upf3a	100	86.694	Maylandia_zebra
ENSPFOG00000013222	upf3a	85	64.216	ENSMGAG00000014837	UPF3A	99	64.303	Meleagris_gallopavo
ENSPFOG00000013222	upf3a	100	82.708	ENSMMOG00000019751	upf3a	100	82.708	Mola_mola
ENSPFOG00000013222	upf3a	85	66.667	ENSMODG00000003159	UPF3A	95	67.402	Monodelphis_domestica
ENSPFOG00000013222	upf3a	79	61.351	ENSMUSG00000038398	Upf3a	87	52.785	Mus_musculus
ENSPFOG00000013222	upf3a	80	62.097	MGP_PahariEiJ_G0021311	Upf3a	87	62.097	Mus_pahari
ENSPFOG00000013222	upf3a	79	61.126	MGP_SPRETEiJ_G0031958	Upf3a	87	52.785	Mus_spretus
ENSPFOG00000013222	upf3a	89	56.849	ENSMPUG00000009139	UPF3A	90	56.849	Mustela_putorius_furo
ENSPFOG00000013222	upf3a	80	61.637	ENSMLUG00000015905	UPF3A	92	61.637	Myotis_lucifugus
ENSPFOG00000013222	upf3a	84	55.970	ENSNGAG00000019314	Upf3a	95	55.970	Nannospalax_galili
ENSPFOG00000013222	upf3a	100	90.065	ENSNBRG00000000828	upf3a	100	90.065	Neolamprologus_brichardi
ENSPFOG00000013222	upf3a	84	61.069	ENSNLEG00000007563	UPF3A	92	57.727	Nomascus_leucogenys
ENSPFOG00000013222	upf3a	100	89.485	ENSONIG00000006817	upf3a	100	89.485	Oreochromis_niloticus
ENSPFOG00000013222	upf3a	76	56.793	ENSOANG00000006985	-	95	56.793	Ornithorhynchus_anatinus
ENSPFOG00000013222	upf3a	100	84.797	ENSORLG00000010911	upf3a	100	84.797	Oryzias_latipes
ENSPFOG00000013222	upf3a	84	41.727	ENSORLG00020003758	upf3b	61	59.358	Oryzias_latipes_hni
ENSPFOG00000013222	upf3a	100	84.017	ENSORLG00020014317	upf3a	100	84.017	Oryzias_latipes_hni
ENSPFOG00000013222	upf3a	100	84.665	ENSORLG00015017339	upf3a	58	84.665	Oryzias_latipes_hsok
ENSPFOG00000013222	upf3a	100	85.745	ENSOMEG00000014425	upf3a	100	85.745	Oryzias_melastigma
ENSPFOG00000013222	upf3a	74	61.538	ENSOGAG00000004788	UPF3A	88	61.538	Otolemur_garnettii
ENSPFOG00000013222	upf3a	83	58.706	ENSOARG00000009004	UPF3A	84	59.000	Ovis_aries
ENSPFOG00000013222	upf3a	90	57.175	ENSPPAG00000042267	UPF3A	92	57.175	Pan_paniscus
ENSPFOG00000013222	upf3a	90	56.757	ENSPPRG00000025062	UPF3A	92	57.207	Panthera_pardus
ENSPFOG00000013222	upf3a	82	45.524	ENSPTRG00000051640	-	87	44.246	Pan_troglodytes
ENSPFOG00000013222	upf3a	90	57.175	ENSPTRG00000006073	UPF3A	92	57.175	Pan_troglodytes
ENSPFOG00000013222	upf3a	82	49.490	ENSPTRG00000041187	-	87	46.173	Pan_troglodytes
ENSPFOG00000013222	upf3a	82	48.691	ENSPTRG00000041835	-	87	41.787	Pan_troglodytes
ENSPFOG00000013222	upf3a	88	59.670	ENSPANG00000004346	UPF3A	95	58.166	Papio_anubis
ENSPFOG00000013222	upf3a	88	74.155	ENSPKIG00000004422	upf3a	98	67.708	Paramormyrops_kingsleyae
ENSPFOG00000013222	upf3a	91	47.639	ENSPKIG00000019226	upf3b	95	63.871	Paramormyrops_kingsleyae
ENSPFOG00000013222	upf3a	83	67.929	ENSPSIG00000007468	UPF3A	96	67.929	Pelodiscus_sinensis
ENSPFOG00000013222	upf3a	100	80.619	ENSPMGG00000012696	upf3a	100	80.619	Periophthalmus_magnuspinnatus
ENSPFOG00000013222	upf3a	81	58.961	ENSPEMG00000019968	-	91	58.961	Peromyscus_maniculatus_bairdii
ENSPFOG00000013222	upf3a	73	68.722	ENSPCIG00000019590	-	90	66.019	Phascolarctos_cinereus
ENSPFOG00000013222	upf3a	98	98.468	ENSPLAG00000011960	upf3a	100	98.468	Poecilia_latipinna
ENSPFOG00000013222	upf3a	50	57.806	ENSPLAG00000005105	upf3b	91	40.950	Poecilia_latipinna
ENSPFOG00000013222	upf3a	50	57.806	ENSPLAG00000019922	upf3b	91	40.950	Poecilia_latipinna
ENSPFOG00000013222	upf3a	100	95.445	ENSPMEG00000000836	upf3a	100	95.445	Poecilia_mexicana
ENSPFOG00000013222	upf3a	90	57.175	ENSPPYG00000005536	UPF3A	92	57.175	Pongo_abelii
ENSPFOG00000013222	upf3a	85	47.031	ENSPCOG00000021960	UPF3B	51	71.951	Propithecus_coquereli
ENSPFOG00000013222	upf3a	82	58.794	ENSPVAG00000005656	UPF3A	82	58.354	Pteropus_vampyrus
ENSPFOG00000013222	upf3a	100	86.694	ENSPNYG00000011289	upf3a	100	86.694	Pundamilia_nyererei
ENSPFOG00000013222	upf3a	84	51.981	ENSPNAG00000021528	upf3b	56	70.760	Pygocentrus_nattereri
ENSPFOG00000013222	upf3a	99	79.437	ENSPNAG00000019532	upf3a	100	79.650	Pygocentrus_nattereri
ENSPFOG00000013222	upf3a	71	64.438	ENSRNOG00000017397	Upf3a	81	64.438	Rattus_norvegicus
ENSPFOG00000013222	upf3a	80	61.273	ENSRBIG00000034007	UPF3A	91	59.352	Rhinopithecus_bieti
ENSPFOG00000013222	upf3a	80	61.600	ENSRROG00000012212	UPF3A	85	59.649	Rhinopithecus_roxellana
ENSPFOG00000013222	upf3a	82	52.683	ENSSBOG00000019740	UPF3B	78	72.393	Saimiri_boliviensis_boliviensis
ENSPFOG00000013222	upf3a	75	57.939	ENSSBOG00000029989	UPF3A	84	57.105	Saimiri_boliviensis_boliviensis
ENSPFOG00000013222	upf3a	87	65.783	ENSSHAG00000009895	UPF3A	96	67.654	Sarcophilus_harrisii
ENSPFOG00000013222	upf3a	99	69.330	ENSSFOG00015021851	upf3a	100	68.683	Scleropages_formosus
ENSPFOG00000013222	upf3a	84	51.157	ENSSFOG00015005614	upf3b	91	41.290	Scleropages_formosus
ENSPFOG00000013222	upf3a	100	80.244	ENSSMAG00000003858	upf3a	100	81.466	Scophthalmus_maximus
ENSPFOG00000013222	upf3a	83	45.740	ENSSMAG00000012913	upf3b	54	73.171	Scophthalmus_maximus
ENSPFOG00000013222	upf3a	100	86.639	ENSSDUG00000009680	upf3a	100	86.639	Seriola_dumerili
ENSPFOG00000013222	upf3a	100	89.633	ENSSLDG00000009700	upf3a	100	89.633	Seriola_lalandi_dorsalis
ENSPFOG00000013222	upf3a	85	42.489	ENSSLDG00000003130	upf3b	93	39.869	Seriola_lalandi_dorsalis
ENSPFOG00000013222	upf3a	79	50.392	ENSSARG00000007262	UPF3A	92	50.000	Sorex_araneus
ENSPFOG00000013222	upf3a	100	91.145	ENSSPAG00000007938	upf3a	100	87.734	Stegastes_partitus
ENSPFOG00000013222	upf3a	81	59.335	ENSSSCG00000024679	UPF3A	85	56.542	Sus_scrofa
ENSPFOG00000013222	upf3a	83	68.434	ENSTGUG00000009493	UPF3A	100	68.434	Taeniopygia_guttata
ENSPFOG00000013222	upf3a	100	81.425	ENSTRUG00000012730	upf3a	100	81.425	Takifugu_rubripes
ENSPFOG00000013222	upf3a	83	74.619	ENSTNIG00000014973	upf3a	100	74.112	Tetraodon_nigroviridis
ENSPFOG00000013222	upf3a	73	55.775	ENSTTRG00000015414	UPF3A	74	55.775	Tursiops_truncatus
ENSPFOG00000013222	upf3a	82	47.382	ENSUAMG00000024565	UPF3B	62	69.565	Ursus_americanus
ENSPFOG00000013222	upf3a	80	59.115	ENSVPAG00000003525	UPF3A	94	59.008	Vicugna_pacos
ENSPFOG00000013222	upf3a	82	47.368	ENSVVUG00000011594	UPF3B	77	71.515	Vulpes_vulpes
ENSPFOG00000013222	upf3a	84	57.855	ENSVVUG00000013538	UPF3A	84	46.035	Vulpes_vulpes
ENSPFOG00000013222	upf3a	83	46.898	ENSXETG00000007440	upf3b	71	73.780	Xenopus_tropicalis
ENSPFOG00000013222	upf3a	84	58.987	ENSXETG00000002572	upf3a	93	58.987	Xenopus_tropicalis
ENSPFOG00000013222	upf3a	100	98.491	ENSXMAG00000013452	upf3a	100	98.491	Xiphophorus_maculatus
ENSPFOG00000013222	upf3a	81	45.570	ENSXMAG00000013680	upf3b	91	39.823	Xiphophorus_maculatus