EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPFOG00000013241 (Gene tree)
Gene ID
103145056
Gene Symbol
pabpc1l
Alias
-
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Poecilia_formosa
Status
putative
Strand
Minus strand
Length
11579 bases
Position
chrKI519745.1:667721-679299
Accession
103145056
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPFOP00000024197PABPPF00658.182e-2911
ENSPFOP00000013461PABPPF00658.182.1e-2911
ENSPFOP00000024197RRM_5PF13893.69.7e-1012
ENSPFOP00000024197RRM_5PF13893.69.7e-1022
ENSPFOP00000013461RRM_5PF13893.61e-0912
ENSPFOP00000013461RRM_5PF13893.61e-0922
ENSPFOP00000024197RRM_1PF00076.221e-8914
ENSPFOP00000024197RRM_1PF00076.221e-8924
ENSPFOP00000024197RRM_1PF00076.221e-8934
ENSPFOP00000024197RRM_1PF00076.221e-8944
ENSPFOP00000013461RRM_1PF00076.221e-8914
ENSPFOP00000013461RRM_1PF00076.221e-8924
ENSPFOP00000013461RRM_1PF00076.221e-8934
ENSPFOP00000013461RRM_1PF00076.221e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPFOT00000028040-1985-ENSPFOP00000024197616 (aa)-A0A096LYF6
ENSPFOT00000013480-2080XM_016676546ENSPFOP00000013461619 (aa)XP_016532032A0A087Y608
Gene Model
Click here to download ENSPFOG00000013241's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000013241's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPFOG00000013241pabpc1l5936.957ENSPFOG00000005754sf3b46537.569
ENSPFOG00000013241pabpc1l5833.766ENSPFOG00000009739ELAVL19033.333
ENSPFOG00000013241pabpc1l6034.146ENSPFOG00000007754elavl38334.146
ENSPFOG00000013241pabpc1l10065.679ENSPFOG00000002682pabpc49869.032
ENSPFOG00000013241pabpc1l5036.047ENSPFOG00000003329celf5a5636.082
ENSPFOG00000013241pabpc1l5931.395ENSPFOG00000009767tial17631.395
ENSPFOG00000013241pabpc1l9970.523ENSPFOG00000005917pabpc1b9870.551
ENSPFOG00000013241pabpc1l5036.047ENSPFOG00000016467si:dkey-205h23.26034.737
ENSPFOG00000013241pabpc1l9969.375ENSPFOG00000010815pabpc1a9969.375
ENSPFOG00000013241pabpc1l6030.622ENSPFOG00000003436ELAVL27830.622
ENSPFOG00000013241pabpc1l5434.884ENSPFOG00000013076-5434.884
ENSPFOG00000013241pabpc1l5037.333ENSPFOG00000015300rbm196737.333
ENSPFOG00000013241pabpc1l5837.079ENSPFOG00000014116elavl1a8837.079
ENSPFOG00000013241pabpc1l5134.247ENSPFOG00000013307celf3b6434.247
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPFOG00000013241pabpc1l9969.044ENSG00000101104PABPC1L9875.926Homo_sapiens
ENSPFOG00000013241pabpc1l9982.504ENSAPOG00000010842pabpc1l9982.504Acanthochromis_polyacanthus
ENSPFOG00000013241pabpc1l9964.417ENSAMEG00000004099PABPC1L10065.523Ailuropoda_melanoleuca
ENSPFOG00000013241pabpc1l9991.924ENSACIG00000021004-10091.924Amphilophus_citrinellus
ENSPFOG00000013241pabpc1l10084.824ENSAOCG00000006167-10084.824Amphiprion_ocellaris
ENSPFOG00000013241pabpc1l9984.715ENSAPEG00000010558-9989.450Amphiprion_percula
ENSPFOG00000013241pabpc1l10087.122ENSATEG00000007428pabpc1l10088.673Anabas_testudineus
ENSPFOG00000013241pabpc1l9872.142ENSAPLG00000008415PABPC1L9972.089Anas_platyrhynchos
ENSPFOG00000013241pabpc1l9973.824ENSACAG00000011841PABPC1L9973.824Anolis_carolinensis
ENSPFOG00000013241pabpc1l9968.608ENSANAG00000026826PABPC1L9968.882Aotus_nancymaae
ENSPFOG00000013241pabpc1l10088.818ENSACLG00000024791pabpc1l10088.818Astatotilapia_calliptera
ENSPFOG00000013241pabpc1l10080.763ENSAMXG00000013552pabpc1l10080.763Astyanax_mexicanus
ENSPFOG00000013241pabpc1l6387.500ENSBTAG00000055300-10087.500Bos_taurus
ENSPFOG00000013241pabpc1l6465.185ENSBTAG00000016849PABPC1L8265.185Bos_taurus
ENSPFOG00000013241pabpc1l9968.770ENSCJAG00000017628PABPC1L9969.044Callithrix_jacchus
ENSPFOG00000013241pabpc1l5980.460ENSCJAG00000038506-10080.460Callithrix_jacchus
ENSPFOG00000013241pabpc1l9964.969ENSCAFG00000009573PABPC1L10064.969Canis_familiaris
ENSPFOG00000013241pabpc1l9969.305ENSCAFG00020013828PABPC1L9969.368Canis_lupus_dingo
ENSPFOG00000013241pabpc1l9868.801ENSCHIG00000025759PABPC1L9168.926Capra_hircus
ENSPFOG00000013241pabpc1l9968.285ENSTSYG00000006645PABPC1L9968.395Carlito_syrichta
ENSPFOG00000013241pabpc1l9863.158ENSCAPG00000014519PABPC1L9963.956Cavia_aperea
ENSPFOG00000013241pabpc1l9965.650ENSCPOG00000013633PABPC1L9966.395Cavia_porcellus
ENSPFOG00000013241pabpc1l9968.123ENSCCAG00000023338PABPC1L9968.882Cebus_capucinus
ENSPFOG00000013241pabpc1l9969.044ENSCATG00000034065PABPC1L9969.692Cercocebus_atys
ENSPFOG00000013241pabpc1l9964.734ENSCLAG00000005298PABPC1L9966.124Chinchilla_lanigera
ENSPFOG00000013241pabpc1l9968.650ENSCSAG00000014242PABPC1L9969.530Chlorocebus_sabaeus
ENSPFOG00000013241pabpc1l7180.045ENSCPBG00000017755-9980.045Chrysemys_picta_bellii
ENSPFOG00000013241pabpc1l5484.733ENSCPBG00000007810-8384.733Chrysemys_picta_bellii
ENSPFOG00000013241pabpc1l7967.290ENSCING00000002796-9750.505Ciona_intestinalis
ENSPFOG00000013241pabpc1l9956.434ENSCSAVG00000003102-10083.893Ciona_savignyi
ENSPFOG00000013241pabpc1l9960.484ENSCSAVG00000004246-8971.523Ciona_savignyi
ENSPFOG00000013241pabpc1l9965.655ENSCANG00000037530PABPC1L9966.828Colobus_angolensis_palliatus
ENSPFOG00000013241pabpc1l9961.798ENSCGRG00001021938Pabpc1l9962.561Cricetulus_griseus_chok1gshd
ENSPFOG00000013241pabpc1l9961.798ENSCGRG00000007946Pabpc1l9962.561Cricetulus_griseus_crigri
ENSPFOG00000013241pabpc1l9878.017ENSCSEG00000021295pabpc1l9978.017Cynoglossus_semilaevis
ENSPFOG00000013241pabpc1l9992.810ENSCVAG00000015943-9996.947Cyprinodon_variegatus
ENSPFOG00000013241pabpc1l9978.981ENSDARG00000002597pabpc1l8895.385Danio_rerio
ENSPFOG00000013241pabpc1l9869.368ENSDNOG00000048450PABPC1L9969.368Dasypus_novemcinctus
ENSPFOG00000013241pabpc1l9966.186ENSDORG00000001067Pabpc1l10066.186Dipodomys_ordii
ENSPFOG00000013241pabpc1l9576.423ENSETEG00000009969PABPC1L7276.423Echinops_telfairi
ENSPFOG00000013241pabpc1l6385.119ENSEASG00005023408-10085.119Equus_asinus_asinus
ENSPFOG00000013241pabpc1l5174.684ENSEASG00005023407-6474.684Equus_asinus_asinus
ENSPFOG00000013241pabpc1l6963.525ENSECAG00000040139-8863.525Equus_caballus
ENSPFOG00000013241pabpc1l9966.181ENSEEUG00000005978PABPC1L9966.775Erinaceus_europaeus
ENSPFOG00000013241pabpc1l10081.081ENSELUG00000001811pabpc1l10081.081Esox_lucius
ENSPFOG00000013241pabpc1l9870.178ENSFCAG00000011692PABPC1L9970.178Felis_catus
ENSPFOG00000013241pabpc1l8770.780ENSFALG00000005372PABPC1L9768.782Ficedula_albicollis
ENSPFOG00000013241pabpc1l9965.210ENSFDAG00000008291PABPC1L9966.557Fukomys_damarensis
ENSPFOG00000013241pabpc1l10094.194ENSFHEG00000003398pabpc1l10094.194Fundulus_heteroclitus
ENSPFOG00000013241pabpc1l9983.117ENSGMOG00000004437pabpc1l9983.117Gadus_morhua
ENSPFOG00000013241pabpc1l9568.151ENSGALG00000004123PABPC1L9980.523Gallus_gallus
ENSPFOG00000013241pabpc1l10093.088ENSGAFG00000021057pabpc1l10093.088Gambusia_affinis
ENSPFOG00000013241pabpc1l9986.656ENSGACG00000002792pabpc1l10086.656Gasterosteus_aculeatus
ENSPFOG00000013241pabpc1l9974.092ENSGAGG00000000589PABPC1L9778.899Gopherus_agassizii
ENSPFOG00000013241pabpc1l9969.044ENSGGOG00000004584PABPC1L9969.530Gorilla_gorilla
ENSPFOG00000013241pabpc1l10088.658ENSHBUG00000006134pabpc1l10088.658Haplochromis_burtoni
ENSPFOG00000013241pabpc1l9966.992ENSHGLG00000008434PABPC1L9967.541Heterocephalus_glaber_female
ENSPFOG00000013241pabpc1l5986.517ENSHGLG00100019506-10086.517Heterocephalus_glaber_male
ENSPFOG00000013241pabpc1l9966.992ENSHGLG00100012151PABPC1L9967.541Heterocephalus_glaber_male
ENSPFOG00000013241pabpc1l9985.025ENSHCOG00000009270pabpc1l10085.025Hippocampus_comes
ENSPFOG00000013241pabpc1l10079.809ENSIPUG00000012602pabpc1l10079.809Ictalurus_punctatus
ENSPFOG00000013241pabpc1l5962.644ENSIPUG00000006760-8862.644Ictalurus_punctatus
ENSPFOG00000013241pabpc1l5962.644ENSIPUG00000006780-8562.644Ictalurus_punctatus
ENSPFOG00000013241pabpc1l9968.123ENSSTOG00000003739PABPC1L9968.395Ictidomys_tridecemlineatus
ENSPFOG00000013241pabpc1l9952.973ENSJJAG00000022406Pabpc1l9951.685Jaculus_jaculus
ENSPFOG00000013241pabpc1l9990.260ENSKMAG00000016847pabpc1l10090.260Kryptolebias_marmoratus
ENSPFOG00000013241pabpc1l10087.700ENSLBEG00000010084pabpc1l10087.700Labrus_bergylta
ENSPFOG00000013241pabpc1l9972.598ENSLACG00000005762PABPC1L9972.598Latimeria_chalumnae
ENSPFOG00000013241pabpc1l9980.861ENSLOCG00000007519pabpc1l9980.861Lepisosteus_oculatus
ENSPFOG00000013241pabpc1l9966.983ENSLAFG00000003553PABPC1L10067.520Loxodonta_africana
ENSPFOG00000013241pabpc1l9969.368ENSMFAG00000040365PABPC1L9970.016Macaca_fascicularis
ENSPFOG00000013241pabpc1l9968.233ENSMNEG00000032298PABPC1L9968.720Macaca_nemestrina
ENSPFOG00000013241pabpc1l9969.044ENSMLEG00000043139PABPC1L9969.692Mandrillus_leucophaeus
ENSPFOG00000013241pabpc1l9689.130ENSMAMG00000011854pabpc1l9789.130Mastacembelus_armatus
ENSPFOG00000013241pabpc1l10088.818ENSMZEG00005023713pabpc1l10088.818Maylandia_zebra
ENSPFOG00000013241pabpc1l9973.718ENSMGAG00000003674PABPC1L9973.718Meleagris_gallopavo
ENSPFOG00000013241pabpc1l9960.766ENSMOCG00000013186Pabpc1l9961.650Microtus_ochrogaster
ENSPFOG00000013241pabpc1l9987.013ENSMMOG00000020574-9096.154Mola_mola
ENSPFOG00000013241pabpc1l9671.570ENSMODG00000016198PABPC1L9971.570Monodelphis_domestica
ENSPFOG00000013241pabpc1l9787.150ENSMALG00000021622pabpc1l10087.150Monopterus_albus
ENSPFOG00000013241pabpc1l9962.136MGP_CAROLIEiJ_G0024627Pabpc1l9962.136Mus_caroli
ENSPFOG00000013241pabpc1l9962.136ENSMUSG00000054582Pabpc1l9962.136Mus_musculus
ENSPFOG00000013241pabpc1l10062.360MGP_PahariEiJ_G0026071Pabpc1l10062.360Mus_pahari
ENSPFOG00000013241pabpc1l9962.136MGP_SPRETEiJ_G0025549Pabpc1l9962.136Mus_spretus
ENSPFOG00000013241pabpc1l9968.949ENSMPUG00000017646PABPC1L9969.839Mustela_putorius_furo
ENSPFOG00000013241pabpc1l9867.258ENSMLUG00000006324PABPC1L9867.419Myotis_lucifugus
ENSPFOG00000013241pabpc1l9963.226ENSNGAG00000010458Pabpc1l9963.785Nannospalax_galili
ENSPFOG00000013241pabpc1l10088.339ENSNBRG00000016633pabpc1l10093.976Neolamprologus_brichardi
ENSPFOG00000013241pabpc1l9065.771ENSMEUG00000007905-8966.727Notamacropus_eugenii
ENSPFOG00000013241pabpc1l9967.633ENSOPRG00000011846PABPC1L9967.897Ochotona_princeps
ENSPFOG00000013241pabpc1l9862.479ENSODEG00000015482PABPC1L9962.479Octodon_degus
ENSPFOG00000013241pabpc1l5880.625ENSODEG00000002920-9780.625Octodon_degus
ENSPFOG00000013241pabpc1l10088.818ENSONIG00000017314pabpc1l10088.818Oreochromis_niloticus
ENSPFOG00000013241pabpc1l9063.055ENSOANG00000015793-10063.309Ornithorhynchus_anatinus
ENSPFOG00000013241pabpc1l9965.244ENSOCUG00000003005PABPC1L9965.396Oryctolagus_cuniculus
ENSPFOG00000013241pabpc1l10086.901ENSORLG00000010322pabpc1l10089.720Oryzias_latipes
ENSPFOG00000013241pabpc1l10086.581ENSORLG00020021193pabpc1l10089.720Oryzias_latipes_hni
ENSPFOG00000013241pabpc1l10086.741ENSORLG00015017018pabpc1l10089.720Oryzias_latipes_hsok
ENSPFOG00000013241pabpc1l10084.275ENSOMEG00000010789pabpc1l10084.275Oryzias_melastigma
ENSPFOG00000013241pabpc1l9968.102ENSOGAG00000032999PABPC1L9968.102Otolemur_garnettii
ENSPFOG00000013241pabpc1l9968.447ENSOARG00000004578PABPC1L9968.567Ovis_aries
ENSPFOG00000013241pabpc1l9969.206ENSPPAG00000039677PABPC1L9969.692Pan_paniscus
ENSPFOG00000013241pabpc1l6267.593ENSPPRG00000019327-9867.593Panthera_pardus
ENSPFOG00000013241pabpc1l9968.921ENSPTIG00000006524PABPC1L9970.164Panthera_tigris_altaica
ENSPFOG00000013241pabpc1l6376.235ENSPTRG00000013531PABPC1L9876.235Pan_troglodytes
ENSPFOG00000013241pabpc1l9969.044ENSPANG00000018788PABPC1L9969.692Papio_anubis
ENSPFOG00000013241pabpc1l10078.219ENSPKIG00000007322pabpc1l10078.526Paramormyrops_kingsleyae
ENSPFOG00000013241pabpc1l5383.969ENSPKIG00000016810-9383.969Paramormyrops_kingsleyae
ENSPFOG00000013241pabpc1l6781.535ENSPSIG00000013289PABPC1L9981.535Pelodiscus_sinensis
ENSPFOG00000013241pabpc1l7084.103ENSPMGG00000023121-9184.103Periophthalmus_magnuspinnatus
ENSPFOG00000013241pabpc1l6396.212ENSPMGG00000023117pabpc1l9794.419Periophthalmus_magnuspinnatus
ENSPFOG00000013241pabpc1l9960.582ENSPEMG00000020671Pabpc1l9961.664Peromyscus_maniculatus_bairdii
ENSPFOG00000013241pabpc1l53100.000ENSPLAG00000023686-92100.000Poecilia_latipinna
ENSPFOG00000013241pabpc1l10099.677ENSPLAG00000017490-10099.677Poecilia_latipinna
ENSPFOG00000013241pabpc1l10098.869ENSPMEG00000007677pabpc1l10098.869Poecilia_mexicana
ENSPFOG00000013241pabpc1l53100.000ENSPMEG00000009185-88100.000Poecilia_mexicana
ENSPFOG00000013241pabpc1l6799.027ENSPREG00000015886pabpc1l9999.027Poecilia_reticulata
ENSPFOG00000013241pabpc1l9969.044ENSPPYG00000011042PABPC1L9969.692Pongo_abelii
ENSPFOG00000013241pabpc1l6185.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSPFOG00000013241pabpc1l9869.156ENSPCOG00000020630PABPC1L9969.692Propithecus_coquereli
ENSPFOG00000013241pabpc1l9968.599ENSPVAG00000012663PABPC1L9968.618Pteropus_vampyrus
ENSPFOG00000013241pabpc1l9985.203ENSPNYG00000004101pabpc1l10094.217Pundamilia_nyererei
ENSPFOG00000013241pabpc1l10074.245ENSPNAG00000021248pabpc1l10074.245Pygocentrus_nattereri
ENSPFOG00000013241pabpc1l9961.353ENSRNOG00000012750Pabpc1l9962.058Rattus_norvegicus
ENSPFOG00000013241pabpc1l9969.044ENSRBIG00000035381PABPC1L9969.692Rhinopithecus_bieti
ENSPFOG00000013241pabpc1l9968.882ENSRROG00000044498PABPC1L9969.530Rhinopithecus_roxellana
ENSPFOG00000013241pabpc1l9968.608ENSSBOG00000009532-9968.882Saimiri_boliviensis_boliviensis
ENSPFOG00000013241pabpc1l9765.784ENSSHAG00000011446PABPC1L10065.784Sarcophilus_harrisii
ENSPFOG00000013241pabpc1l10079.683ENSSFOG00015017304pabpc1l10080.000Scleropages_formosus
ENSPFOG00000013241pabpc1l9693.878ENSSMAG00000010516pabpc1l9898.450Scophthalmus_maximus
ENSPFOG00000013241pabpc1l10088.179ENSSDUG00000014743pabpc1l10088.179Seriola_dumerili
ENSPFOG00000013241pabpc1l9785.149ENSSLDG00000006981pabpc1l9893.151Seriola_lalandi_dorsalis
ENSPFOG00000013241pabpc1l9972.170ENSSPUG00000004233PABPC1L9972.170Sphenodon_punctatus
ENSPFOG00000013241pabpc1l9978.947ENSSPAG00000017137pabpc1l10079.276Stegastes_partitus
ENSPFOG00000013241pabpc1l9868.567ENSSSCG00000007382PABPC1L9968.567Sus_scrofa
ENSPFOG00000013241pabpc1l9971.654ENSTGUG00000005114PABPC1L10071.654Taeniopygia_guttata
ENSPFOG00000013241pabpc1l9786.161ENSTRUG00000011085pabpc1l9786.161Takifugu_rubripes
ENSPFOG00000013241pabpc1l9984.244ENSTNIG00000017903pabpc1l9884.244Tetraodon_nigroviridis
ENSPFOG00000013241pabpc1l9477.055ENSTBEG00000002851PABPC1L7977.055Tupaia_belangeri
ENSPFOG00000013241pabpc1l9466.497ENSTTRG00000007618PABPC1L10067.224Tursiops_truncatus
ENSPFOG00000013241pabpc1l9867.642ENSUAMG00000017682PABPC1L9967.642Ursus_americanus
ENSPFOG00000013241pabpc1l6673.538ENSUMAG00000025436PABPC1L9273.538Ursus_maritimus
ENSPFOG00000013241pabpc1l9780.465ENSVVUG00000018939PABPC1L9680.465Vulpes_vulpes
ENSPFOG00000013241pabpc1l9969.826ENSXETG00000022831pabpc1l9969.826Xenopus_tropicalis
ENSPFOG00000013241pabpc1l10097.254ENSXCOG00000005459pabpc1l10097.712Xiphophorus_couchianus
ENSPFOG00000013241pabpc1l10098.384ENSXMAG00000017135pabpc1l10098.384Xiphophorus_maculatus

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