EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000013932 (Gene tree)
Gene ID: 103138350
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 15816 bases
Position: chrKI519659.1:814923-830738
Accession: 103138350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000014300	XRN_N	PF03159.18	6.5e-97	1	1
ENSPFOP00000028313	XRN_N	PF03159.18	7e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000030943	-	5026	-	ENSPFOP00000028313	1551 (aa)	-	A0A096MA72
ENSPFOT00000014320	-	5041	XM_007552508	ENSPFOP00000014300	1556 (aa)	XP_007552570	A0A087Y8E7

Gene Model

Click here to download ENSPFOG00000013932's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000013932's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000013932	xrn1	99	64.630	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSPFOG00000013932	xrn1	94	87.682	ENSAPOG00000000622	xrn1	94	85.356	Acanthochromis_polyacanthus
ENSPFOG00000013932	xrn1	99	63.505	ENSAMEG00000012538	XRN1	91	63.430	Ailuropoda_melanoleuca
ENSPFOG00000013932	xrn1	99	82.944	ENSACIG00000001057	xrn1	89	88.000	Amphilophus_citrinellus
ENSPFOG00000013932	xrn1	99	83.655	ENSAOCG00000014097	xrn1	87	95.122	Amphiprion_ocellaris
ENSPFOG00000013932	xrn1	99	85.233	ENSAPEG00000006620	xrn1	95	84.650	Amphiprion_percula
ENSPFOG00000013932	xrn1	97	83.333	ENSATEG00000009752	xrn1	91	83.229	Anabas_testudineus
ENSPFOG00000013932	xrn1	97	63.214	ENSAPLG00000004905	XRN1	91	63.214	Anas_platyrhynchos
ENSPFOG00000013932	xrn1	99	62.653	ENSACAG00000004985	XRN1	91	62.439	Anolis_carolinensis
ENSPFOG00000013932	xrn1	99	65.080	ENSANAG00000029013	XRN1	99	73.310	Aotus_nancymaae
ENSPFOG00000013932	xrn1	99	84.650	ENSACLG00000004806	xrn1	90	84.391	Astatotilapia_calliptera
ENSPFOG00000013932	xrn1	99	70.505	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSPFOG00000013932	xrn1	99	64.763	ENSBTAG00000011524	XRN1	90	64.611	Bos_taurus
ENSPFOG00000013932	xrn1	77	38.034	WBGene00012730	xrn-1	84	36.938	Caenorhabditis_elegans
ENSPFOG00000013932	xrn1	99	64.917	ENSCJAG00000001872	XRN1	94	64.578	Callithrix_jacchus
ENSPFOG00000013932	xrn1	99	65.555	ENSCAFG00000007783	XRN1	90	65.237	Canis_familiaris
ENSPFOG00000013932	xrn1	99	64.201	ENSCAFG00020009120	XRN1	99	75.824	Canis_lupus_dingo
ENSPFOG00000013932	xrn1	99	63.386	ENSCHIG00000019192	XRN1	91	63.367	Capra_hircus
ENSPFOG00000013932	xrn1	99	64.186	ENSTSYG00000002705	XRN1	91	64.350	Carlito_syrichta
ENSPFOG00000013932	xrn1	55	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSPFOG00000013932	xrn1	99	65.000	ENSCCAG00000034800	XRN1	99	77.480	Cebus_capucinus
ENSPFOG00000013932	xrn1	99	64.955	ENSCATG00000041794	XRN1	91	64.574	Cercocebus_atys
ENSPFOG00000013932	xrn1	97	64.470	ENSCLAG00000001451	XRN1	99	78.425	Chinchilla_lanigera
ENSPFOG00000013932	xrn1	99	65.019	ENSCSAG00000011265	XRN1	90	64.638	Chlorocebus_sabaeus
ENSPFOG00000013932	xrn1	77	50.249	ENSCSAVG00000008584	-	93	50.150	Ciona_savignyi
ENSPFOG00000013932	xrn1	99	65.148	ENSCANG00000037495	XRN1	99	77.480	Colobus_angolensis_palliatus
ENSPFOG00000013932	xrn1	99	62.930	ENSCGRG00001019411	Xrn1	99	77.953	Cricetulus_griseus_chok1gshd
ENSPFOG00000013932	xrn1	99	62.930	ENSCGRG00000012464	Xrn1	99	77.953	Cricetulus_griseus_crigri
ENSPFOG00000013932	xrn1	99	72.669	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSPFOG00000013932	xrn1	73	88.996	ENSCVAG00000013089	xrn1	99	89.613	Cyprinodon_variegatus
ENSPFOG00000013932	xrn1	99	73.202	ENSDARG00000091652	xrn1	98	81.474	Danio_rerio
ENSPFOG00000013932	xrn1	99	64.368	ENSDORG00000013833	Xrn1	91	64.117	Dipodomys_ordii
ENSPFOG00000013932	xrn1	76	41.304	FBgn0020261	pcm	71	41.722	Drosophila_melanogaster
ENSPFOG00000013932	xrn1	83	69.369	ENSETEG00000003978	XRN1	78	70.248	Echinops_telfairi
ENSPFOG00000013932	xrn1	99	64.706	ENSEASG00005002687	XRN1	99	78.459	Equus_asinus_asinus
ENSPFOG00000013932	xrn1	99	64.642	ENSECAG00000008301	XRN1	90	64.751	Equus_caballus
ENSPFOG00000013932	xrn1	80	79.110	ENSEEUG00000011323	XRN1	73	79.110	Erinaceus_europaeus
ENSPFOG00000013932	xrn1	99	73.985	ENSELUG00000000169	xrn1	91	73.473	Esox_lucius
ENSPFOG00000013932	xrn1	99	61.321	ENSFCAG00000027589	XRN1	99	79.482	Felis_catus
ENSPFOG00000013932	xrn1	95	69.748	ENSFALG00000007021	XRN1	86	69.824	Ficedula_albicollis
ENSPFOG00000013932	xrn1	99	63.511	ENSFDAG00000020494	XRN1	99	78.110	Fukomys_damarensis
ENSPFOG00000013932	xrn1	88	74.510	ENSGMOG00000006396	xrn1	80	74.755	Gadus_morhua
ENSPFOG00000013932	xrn1	99	63.870	ENSGALG00000002706	XRN1	91	63.787	Gallus_gallus
ENSPFOG00000013932	xrn1	99	78.719	ENSGACG00000014328	xrn1	91	78.280	Gasterosteus_aculeatus
ENSPFOG00000013932	xrn1	99	63.755	ENSGAGG00000017535	XRN1	96	63.693	Gopherus_agassizii
ENSPFOG00000013932	xrn1	99	64.872	ENSGGOG00000008047	XRN1	91	64.574	Gorilla_gorilla
ENSPFOG00000013932	xrn1	99	82.013	ENSHBUG00000005908	xrn1	96	82.083	Haplochromis_burtoni
ENSPFOG00000013932	xrn1	99	63.631	ENSHGLG00000014476	XRN1	99	77.795	Heterocephalus_glaber_female
ENSPFOG00000013932	xrn1	99	63.631	ENSHGLG00100015130	XRN1	99	77.795	Heterocephalus_glaber_male
ENSPFOG00000013932	xrn1	95	81.644	ENSHCOG00000014062	xrn1	90	83.157	Hippocampus_comes
ENSPFOG00000013932	xrn1	99	72.062	ENSIPUG00000015229	xrn1	91	71.722	Ictalurus_punctatus
ENSPFOG00000013932	xrn1	99	63.711	ENSSTOG00000013552	XRN1	99	77.638	Ictidomys_tridecemlineatus
ENSPFOG00000013932	xrn1	97	63.312	ENSJJAG00000010863	Xrn1	99	77.049	Jaculus_jaculus
ENSPFOG00000013932	xrn1	99	81.424	ENSKMAG00000021356	xrn1	95	84.342	Kryptolebias_marmoratus
ENSPFOG00000013932	xrn1	99	79.681	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSPFOG00000013932	xrn1	99	64.922	ENSLACG00000009020	XRN1	91	64.816	Latimeria_chalumnae
ENSPFOG00000013932	xrn1	99	68.851	ENSLOCG00000007944	xrn1	92	68.836	Lepisosteus_oculatus
ENSPFOG00000013932	xrn1	68	73.283	ENSLAFG00000015426	XRN1	99	73.346	Loxodonta_africana
ENSPFOG00000013932	xrn1	99	65.083	ENSMFAG00000032599	XRN1	91	64.702	Macaca_fascicularis
ENSPFOG00000013932	xrn1	99	65.083	ENSMMUG00000014038	XRN1	91	64.702	Macaca_mulatta
ENSPFOG00000013932	xrn1	99	65.019	ENSMNEG00000034217	XRN1	91	64.638	Macaca_nemestrina
ENSPFOG00000013932	xrn1	97	85.303	ENSMAMG00000013219	xrn1	92	86.402	Mastacembelus_armatus
ENSPFOG00000013932	xrn1	99	84.521	ENSMZEG00005015099	xrn1	90	84.262	Maylandia_zebra
ENSPFOG00000013932	xrn1	97	62.761	ENSMGAG00000006333	XRN1	91	62.698	Meleagris_gallopavo
ENSPFOG00000013932	xrn1	99	64.943	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSPFOG00000013932	xrn1	62	78.110	ENSMOCG00000008665	Xrn1	99	78.110	Microtus_ochrogaster
ENSPFOG00000013932	xrn1	99	64.529	ENSMODG00000021236	XRN1	90	64.510	Monodelphis_domestica
ENSPFOG00000013932	xrn1	97	78.661	ENSMALG00000004098	xrn1	90	78.604	Monopterus_albus
ENSPFOG00000013932	xrn1	93	78.323	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSPFOG00000013932	xrn1	97	63.421	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSPFOG00000013932	xrn1	97	63.323	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSPFOG00000013932	xrn1	97	63.421	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSPFOG00000013932	xrn1	99	65.360	ENSMPUG00000012040	XRN1	90	65.080	Mustela_putorius_furo
ENSPFOG00000013932	xrn1	99	63.281	ENSMLUG00000016885	XRN1	91	63.184	Myotis_lucifugus
ENSPFOG00000013932	xrn1	62	74.016	ENSNGAG00000023964	Xrn1	99	74.016	Nannospalax_galili
ENSPFOG00000013932	xrn1	99	64.593	ENSNLEG00000004726	XRN1	91	64.213	Nomascus_leucogenys
ENSPFOG00000013932	xrn1	61	95.876	ENSMEUG00000014473	-	57	96.117	Notamacropus_eugenii
ENSPFOG00000013932	xrn1	67	69.343	ENSOPRG00000007337	-	55	69.343	Ochotona_princeps
ENSPFOG00000013932	xrn1	97	85.212	ENSONIG00000016673	xrn1	99	84.947	Oreochromis_niloticus
ENSPFOG00000013932	xrn1	90	61.882	ENSOANG00000006735	XRN1	89	61.603	Ornithorhynchus_anatinus
ENSPFOG00000013932	xrn1	99	63.488	ENSOCUG00000001861	XRN1	90	63.369	Oryctolagus_cuniculus
ENSPFOG00000013932	xrn1	99	82.696	ENSORLG00000013005	xrn1	89	82.178	Oryzias_latipes
ENSPFOG00000013932	xrn1	99	82.566	ENSORLG00020005559	xrn1	90	82.048	Oryzias_latipes_hni
ENSPFOG00000013932	xrn1	99	81.854	ENSORLG00015022523	xrn1	90	81.465	Oryzias_latipes_hsok
ENSPFOG00000013932	xrn1	99	82.955	ENSOMEG00000015397	xrn1	88	87.186	Oryzias_melastigma
ENSPFOG00000013932	xrn1	99	63.165	ENSOGAG00000000170	XRN1	90	62.925	Otolemur_garnettii
ENSPFOG00000013932	xrn1	99	64.933	ENSOARG00000006343	XRN1	90	64.653	Ovis_aries
ENSPFOG00000013932	xrn1	99	64.801	ENSPPAG00000010180	XRN1	91	64.502	Pan_paniscus
ENSPFOG00000013932	xrn1	99	65.170	ENSPPRG00000007125	XRN1	91	64.891	Panthera_pardus
ENSPFOG00000013932	xrn1	99	65.170	ENSPTIG00000021081	XRN1	91	64.891	Panthera_tigris_altaica
ENSPFOG00000013932	xrn1	99	64.801	ENSPTRG00000015482	XRN1	91	64.603	Pan_troglodytes
ENSPFOG00000013932	xrn1	99	65.083	ENSPANG00000010638	XRN1	91	64.702	Papio_anubis
ENSPFOG00000013932	xrn1	99	63.811	ENSPSIG00000018050	XRN1	91	63.891	Pelodiscus_sinensis
ENSPFOG00000013932	xrn1	63	85.799	ENSPMGG00000002648	xrn1	99	86.145	Periophthalmus_magnuspinnatus
ENSPFOG00000013932	xrn1	62	77.795	ENSPEMG00000020610	Xrn1	99	77.795	Peromyscus_maniculatus_bairdii
ENSPFOG00000013932	xrn1	72	49.118	ENSPMAG00000002975	xrn1	90	77.011	Petromyzon_marinus
ENSPFOG00000013932	xrn1	99	65.109	ENSPCIG00000028735	XRN1	99	77.918	Phascolarctos_cinereus
ENSPFOG00000013932	xrn1	100	99.422	ENSPLAG00000021653	xrn1	100	99.422	Poecilia_latipinna
ENSPFOG00000013932	xrn1	97	99.201	ENSPMEG00000003076	xrn1	95	99.201	Poecilia_mexicana
ENSPFOG00000013932	xrn1	99	97.724	ENSPREG00000021147	xrn1	90	97.724	Poecilia_reticulata
ENSPFOG00000013932	xrn1	99	64.891	ENSPPYG00000014172	XRN1	90	64.574	Pongo_abelii
ENSPFOG00000013932	xrn1	91	78.584	ENSPCAG00000005638	XRN1	92	78.584	Procavia_capensis
ENSPFOG00000013932	xrn1	99	64.747	ENSPCOG00000013089	XRN1	99	77.480	Propithecus_coquereli
ENSPFOG00000013932	xrn1	92	69.880	ENSPVAG00000016265	XRN1	74	85.260	Pteropus_vampyrus
ENSPFOG00000013932	xrn1	99	83.106	ENSPNYG00000010570	xrn1	90	82.976	Pundamilia_nyererei
ENSPFOG00000013932	xrn1	99	70.026	ENSPNAG00000023531	xrn1	91	69.770	Pygocentrus_nattereri
ENSPFOG00000013932	xrn1	97	63.215	ENSRNOG00000042951	Xrn1	91	62.926	Rattus_norvegicus
ENSPFOG00000013932	xrn1	99	64.955	ENSRBIG00000041227	XRN1	91	64.574	Rhinopithecus_bieti
ENSPFOG00000013932	xrn1	78	33.283	YGL173C	XRN1	73	52.446	Saccharomyces_cerevisiae
ENSPFOG00000013932	xrn1	99	64.815	ENSSBOG00000029561	XRN1	91	64.522	Saimiri_boliviensis_boliviensis
ENSPFOG00000013932	xrn1	97	64.188	ENSSHAG00000016207	XRN1	90	64.300	Sarcophilus_harrisii
ENSPFOG00000013932	xrn1	99	70.656	ENSSFOG00015024211	xrn1	92	69.878	Scleropages_formosus
ENSPFOG00000013932	xrn1	99	81.527	ENSSMAG00000016534	xrn1	92	83.077	Scophthalmus_maximus
ENSPFOG00000013932	xrn1	87	88.725	ENSSDUG00000010306	xrn1	86	88.235	Seriola_dumerili
ENSPFOG00000013932	xrn1	95	86.922	ENSSLDG00000021543	xrn1	91	86.385	Seriola_lalandi_dorsalis
ENSPFOG00000013932	xrn1	67	67.179	ENSSARG00000007741	-	75	67.179	Sorex_araneus
ENSPFOG00000013932	xrn1	99	65.038	ENSTGUG00000008498	XRN1	91	65.010	Taeniopygia_guttata
ENSPFOG00000013932	xrn1	97	77.505	ENSTRUG00000004895	xrn1	97	86.229	Takifugu_rubripes
ENSPFOG00000013932	xrn1	99	74.150	ENSTNIG00000017615	xrn1	91	73.765	Tetraodon_nigroviridis
ENSPFOG00000013932	xrn1	82	84.946	ENSTBEG00000003256	XRN1	78	84.615	Tupaia_belangeri
ENSPFOG00000013932	xrn1	94	63.331	ENSTTRG00000012914	XRN1	90	61.218	Tursiops_truncatus
ENSPFOG00000013932	xrn1	99	63.695	ENSUAMG00000001608	XRN1	99	74.290	Ursus_americanus
ENSPFOG00000013932	xrn1	99	65.106	ENSUMAG00000013625	XRN1	90	64.891	Ursus_maritimus
ENSPFOG00000013932	xrn1	99	62.292	ENSVPAG00000004690	XRN1	90	62.076	Vicugna_pacos
ENSPFOG00000013932	xrn1	99	65.555	ENSVVUG00000024461	XRN1	98	83.333	Vulpes_vulpes
ENSPFOG00000013932	xrn1	99	63.614	ENSXETG00000000619	xrn1	98	85.372	Xenopus_tropicalis
ENSPFOG00000013932	xrn1	99	88.688	ENSXCOG00000007917	xrn1	90	88.688	Xiphophorus_couchianus
ENSPFOG00000013932	xrn1	91	95.184	ENSXMAG00000018320	xrn1	87	95.184	Xiphophorus_maculatus