EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000015653 (Gene tree)
Gene ID: 103153542
Gene Symbol: cirbpa
Alias: -
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 3951 bases
Position: chrKI519964.1:196275-200225
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000015711	RRM_1	PF00076.22	8.4e-26	1	1
ENSPFOP00000023528	RRM_1	PF00076.22	9.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000015733	-	745	-	ENSPFOP00000015711	183 (aa)	-	A0A087YCF8
ENSPFOT00000029169	-	757	-	ENSPFOP00000023528	187 (aa)	-	A0A096LWI7

Gene Model

Click here to download ENSPFOG00000015653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000015653's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000015653	cirbpa	57	34.286	ENSPFOG00000014473	ncbp2	57	37.113
ENSPFOG00000015653	cirbpa	51	31.915	ENSPFOG00000020520	-	66	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000015653	cirbpa	73	84.962	ENSAPOG00000004458	cirbpa	72	84.328	Acanthochromis_polyacanthus
ENSPFOG00000015653	cirbpa	100	80.000	ENSACIG00000016116	cirbpa	100	78.836	Amphilophus_citrinellus
ENSPFOG00000015653	cirbpa	100	77.174	ENSAOCG00000016212	cirbpa	100	72.821	Amphiprion_ocellaris
ENSPFOG00000015653	cirbpa	100	79.459	ENSAPEG00000011989	cirbpa	100	74.872	Amphiprion_percula
ENSPFOG00000015653	cirbpa	100	84.699	ENSATEG00000014985	cirbpa	100	79.144	Anabas_testudineus
ENSPFOG00000015653	cirbpa	99	84.239	ENSACLG00000002094	-	99	80.978	Astatotilapia_calliptera
ENSPFOG00000015653	cirbpa	100	55.024	ENSAMXG00000015612	cirbpb	84	56.585	Astyanax_mexicanus
ENSPFOG00000015653	cirbpa	100	68.367	ENSCSEG00000014344	cirbpa	100	71.939	Cynoglossus_semilaevis
ENSPFOG00000015653	cirbpa	100	87.701	ENSCVAG00000004853	cirbpa	100	87.701	Cyprinodon_variegatus
ENSPFOG00000015653	cirbpa	58	54.701	ENSELUG00000004675	-	94	54.717	Esox_lucius
ENSPFOG00000015653	cirbpa	100	81.522	ENSFHEG00000002580	cirbpa	100	83.696	Fundulus_heteroclitus
ENSPFOG00000015653	cirbpa	100	58.673	ENSGMOG00000007179	cirbpb	98	49.020	Gadus_morhua
ENSPFOG00000015653	cirbpa	100	96.216	ENSGAFG00000008654	cirbpa	100	89.840	Gambusia_affinis
ENSPFOG00000015653	cirbpa	100	68.063	ENSGACG00000015206	cirbpa	100	71.204	Gasterosteus_aculeatus
ENSPFOG00000015653	cirbpa	100	84.127	ENSHBUG00000022060	cirbpa	100	80.952	Haplochromis_burtoni
ENSPFOG00000015653	cirbpa	100	70.918	ENSKMAG00000005905	cirbpa	100	70.053	Kryptolebias_marmoratus
ENSPFOG00000015653	cirbpa	100	64.948	ENSLBEG00000000292	cirbpa	100	63.102	Labrus_bergylta
ENSPFOG00000015653	cirbpa	100	82.353	ENSMAMG00000010168	cirbpa	100	80.214	Mastacembelus_armatus
ENSPFOG00000015653	cirbpa	100	84.127	ENSMZEG00005025577	-	100	80.952	Maylandia_zebra
ENSPFOG00000015653	cirbpa	100	81.421	ENSMALG00000020092	cirbpa	99	85.165	Monopterus_albus
ENSPFOG00000015653	cirbpa	100	84.127	ENSNBRG00000019658	cirbpa	100	80.952	Neolamprologus_brichardi
ENSPFOG00000015653	cirbpa	100	80.000	ENSONIG00000010169	cirbpa	100	78.307	Oreochromis_niloticus
ENSPFOG00000015653	cirbpa	100	85.246	ENSORLG00000015433	cirbpa	100	80.952	Oryzias_latipes
ENSPFOG00000015653	cirbpa	100	85.246	ENSORLG00020016909	cirbpa	100	80.952	Oryzias_latipes_hni
ENSPFOG00000015653	cirbpa	100	85.246	ENSORLG00015016636	cirbpa	100	80.952	Oryzias_latipes_hsok
ENSPFOG00000015653	cirbpa	100	85.246	ENSOMEG00000021469	cirbpa	73	82.353	Oryzias_melastigma
ENSPFOG00000015653	cirbpa	99	76.757	ENSPMGG00000017342	cirbpa	95	72.632	Periophthalmus_magnuspinnatus
ENSPFOG00000015653	cirbpa	100	100.000	ENSPLAG00000011125	cirbpa	100	100.000	Poecilia_latipinna
ENSPFOG00000015653	cirbpa	100	100.000	ENSPMEG00000013878	cirbpa	100	100.000	Poecilia_mexicana
ENSPFOG00000015653	cirbpa	100	98.361	ENSPREG00000018042	cirbpa	97	94.536	Poecilia_reticulata
ENSPFOG00000015653	cirbpa	100	84.127	ENSPNYG00000007198	-	100	80.952	Pundamilia_nyererei
ENSPFOG00000015653	cirbpa	100	56.522	ENSPNAG00000019997	cirbpb	98	60.914	Pygocentrus_nattereri
ENSPFOG00000015653	cirbpa	100	60.526	ENSSFOG00015005346	cirbpb	100	66.667	Scleropages_formosus
ENSPFOG00000015653	cirbpa	98	56.995	ENSSFOG00015009951	cirbpa	100	64.249	Scleropages_formosus
ENSPFOG00000015653	cirbpa	100	72.362	ENSSMAG00000002412	cirbpa	100	71.859	Scophthalmus_maximus
ENSPFOG00000015653	cirbpa	100	65.027	ENSSDUG00000016099	cirbpa	100	63.131	Seriola_dumerili
ENSPFOG00000015653	cirbpa	100	70.652	ENSSPAG00000023037	cirbpa	98	67.760	Stegastes_partitus
ENSPFOG00000015653	cirbpa	100	71.658	ENSTRUG00000010187	cirbpa	100	69.519	Takifugu_rubripes
ENSPFOG00000015653	cirbpa	100	75.956	ENSTNIG00000000450	cirbpa	100	75.936	Tetraodon_nigroviridis
ENSPFOG00000015653	cirbpa	100	97.268	ENSXCOG00000008262	cirbpa	98	93.443	Xiphophorus_couchianus
ENSPFOG00000015653	cirbpa	100	96.791	ENSXMAG00000019336	cirbpa	100	93.048	Xiphophorus_maculatus