EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000016359 (Gene tree)
Gene ID: 103133691
Gene Symbol: ppfibp1b
Alias: -
Full Name: poly(U)-specific endoribonuclease-C-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 26603 bases
Position: chrKI519623.1:1716857-1743459
Accession: 103133691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000016492	XendoU	PF09412.10	2.2e-101	1	1
ENSPFOP00000023331	XendoU	PF09412.10	2.4e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000016514	-	2074	-	ENSPFOP00000016492	315 (aa)	XP_007545610	A0A087YEN9
ENSPFOT00000016487	-	4058	-	ENSPFOP00000016465	931 (aa)	-	A0A087YEL2
ENSPFOT00000023929	-	1920	-	ENSPFOP00000023331	321 (aa)	-	A0A096LVZ0

Gene Model

Click here to download ENSPFOG00000016359's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000016359's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000016359	ppfibp1b	92	62.414	ENSPFOG00000000094	si:dkey-222f8.3	99	62.414
ENSPFOG00000016359	ppfibp1b	77	36.214	ENSPFOG00000010846	endou	55	36.214
ENSPFOG00000016359	ppfibp1b	88	49.821	ENSPFOG00000006713	endou2	93	49.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000016359	ppfibp1b	99	78.778	ENSMMOG00000017067	ppfibp1b	97	82.456	Mola_mola
ENSPFOG00000016359	ppfibp1b	93	84.014	ENSNBRG00000003489	ppfibp1b	100	84.014	Neolamprologus_brichardi
ENSPFOG00000016359	ppfibp1b	94	93.919	ENSXCOG00000020485	ppfibp1b	99	94.178	Xiphophorus_couchianus