EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000016849 (Gene tree)
Gene ID: 103140384
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 43978 bases
Position: chrKI519680.1:2353169-2397146
Accession: 103140384
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000016914	CMS1	PF14617.6	2.4e-33	1	1
ENSPFOP00000016914	DEAD	PF00270.29	8.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000016936	-	1583	XM_007555531	ENSPFOP00000016914	286 (aa)	XP_007555593	A0A087YFW1

Gene Model

Click here to download ENSPFOG00000016849's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000016849's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000016849	cmss1	100	52.098	ENSG00000184220	CMSS1	98	66.250	Homo_sapiens
ENSPFOG00000016849	cmss1	94	71.642	ENSAPOG00000010604	cmss1	96	71.648	Acanthochromis_polyacanthus
ENSPFOG00000016849	cmss1	88	56.299	ENSAMEG00000004092	CMSS1	78	62.562	Ailuropoda_melanoleuca
ENSPFOG00000016849	cmss1	92	75.000	ENSACIG00000021854	cmss1	98	75.096	Amphilophus_citrinellus
ENSPFOG00000016849	cmss1	100	71.379	ENSAOCG00000013361	cmss1	100	76.289	Amphiprion_ocellaris
ENSPFOG00000016849	cmss1	100	74.570	ENSAPEG00000005829	cmss1	100	76.632	Amphiprion_percula
ENSPFOG00000016849	cmss1	100	72.759	ENSATEG00000008209	cmss1	100	75.517	Anabas_testudineus
ENSPFOG00000016849	cmss1	71	60.396	ENSAPLG00000010542	CMSS1	88	60.396	Anas_platyrhynchos
ENSPFOG00000016849	cmss1	97	52.899	ENSACAG00000011065	CMSS1	74	62.376	Anolis_carolinensis
ENSPFOG00000016849	cmss1	100	52.448	ENSANAG00000023565	CMSS1	100	52.448	Aotus_nancymaae
ENSPFOG00000016849	cmss1	100	76.027	ENSACLG00000027294	cmss1	100	78.082	Astatotilapia_calliptera
ENSPFOG00000016849	cmss1	100	53.872	ENSAMXG00000002046	cmss1	100	54.762	Astyanax_mexicanus
ENSPFOG00000016849	cmss1	100	53.846	ENSBTAG00000013663	CMSS1	100	50.329	Bos_taurus
ENSPFOG00000016849	cmss1	100	53.659	ENSCJAG00000000610	CMSS1	100	53.659	Callithrix_jacchus
ENSPFOG00000016849	cmss1	71	62.376	ENSCAFG00000009230	CMSS1	73	62.376	Canis_familiaris
ENSPFOG00000016849	cmss1	71	60.396	ENSCAFG00020024156	-	63	60.396	Canis_lupus_dingo
ENSPFOG00000016849	cmss1	71	62.376	ENSCAFG00020009464	-	74	62.376	Canis_lupus_dingo
ENSPFOG00000016849	cmss1	71	63.366	ENSCHIG00000013003	CMSS1	73	63.366	Capra_hircus
ENSPFOG00000016849	cmss1	84	58.750	ENSTSYG00000009266	CMSS1	78	62.871	Carlito_syrichta
ENSPFOG00000016849	cmss1	65	56.989	ENSCAPG00000013584	CMSS1	87	56.989	Cavia_aperea
ENSPFOG00000016849	cmss1	100	55.208	ENSCPOG00000014680	CMSS1	100	54.007	Cavia_porcellus
ENSPFOG00000016849	cmss1	100	53.147	ENSCCAG00000034685	CMSS1	100	49.671	Cebus_capucinus
ENSPFOG00000016849	cmss1	100	52.448	ENSCATG00000031980	CMSS1	100	52.098	Cercocebus_atys
ENSPFOG00000016849	cmss1	70	62.500	ENSCLAG00000011241	CMSS1	87	62.871	Chinchilla_lanigera
ENSPFOG00000016849	cmss1	71	63.366	ENSCSAG00000006024	CMSS1	82	63.366	Chlorocebus_sabaeus
ENSPFOG00000016849	cmss1	100	40.418	ENSCHOG00000012098	CMSS1	100	40.070	Choloepus_hoffmanni
ENSPFOG00000016849	cmss1	65	45.455	ENSCING00000014848	-	99	45.455	Ciona_intestinalis
ENSPFOG00000016849	cmss1	100	52.448	ENSCANG00000031337	CMSS1	100	52.098	Colobus_angolensis_palliatus
ENSPFOG00000016849	cmss1	100	50.871	ENSCGRG00001014305	Cmss1	100	49.310	Cricetulus_griseus_chok1gshd
ENSPFOG00000016849	cmss1	71	61.386	ENSCGRG00000006722	Cmss1	79	61.386	Cricetulus_griseus_crigri
ENSPFOG00000016849	cmss1	100	67.687	ENSCSEG00000004958	cmss1	100	69.048	Cynoglossus_semilaevis
ENSPFOG00000016849	cmss1	100	81.597	ENSCVAG00000005039	cmss1	100	82.639	Cyprinodon_variegatus
ENSPFOG00000016849	cmss1	100	58.020	ENSDARG00000112579	cmss1	100	59.044	Danio_rerio
ENSPFOG00000016849	cmss1	71	62.376	ENSDNOG00000040418	CMSS1	73	62.376	Dasypus_novemcinctus
ENSPFOG00000016849	cmss1	100	53.147	ENSDORG00000010461	Cmss1	100	52.962	Dipodomys_ordii
ENSPFOG00000016849	cmss1	70	62.000	ENSEASG00005010966	CMSS1	92	62.376	Equus_asinus_asinus
ENSPFOG00000016849	cmss1	70	61.500	ENSECAG00000015662	CMSS1	89	61.881	Equus_caballus
ENSPFOG00000016849	cmss1	70	44.000	ENSEEUG00000007624	-	73	44.554	Erinaceus_europaeus
ENSPFOG00000016849	cmss1	100	58.746	ENSELUG00000019459	cmss1	100	60.066	Esox_lucius
ENSPFOG00000016849	cmss1	100	54.861	ENSFCAG00000044577	CMSS1	100	52.613	Felis_catus
ENSPFOG00000016849	cmss1	71	59.901	ENSFALG00000005816	CMSS1	85	59.901	Ficedula_albicollis
ENSPFOG00000016849	cmss1	71	63.366	ENSFDAG00000012577	CMSS1	89	63.366	Fukomys_damarensis
ENSPFOG00000016849	cmss1	81	86.638	ENSFHEG00000012008	cmss1	94	86.900	Fundulus_heteroclitus
ENSPFOG00000016849	cmss1	99	65.278	ENSGMOG00000016729	cmss1	100	63.889	Gadus_morhua
ENSPFOG00000016849	cmss1	71	61.386	ENSGALG00000015267	CMSS1	77	61.386	Gallus_gallus
ENSPFOG00000016849	cmss1	94	86.667	ENSGAFG00000021217	cmss1	97	85.551	Gambusia_affinis
ENSPFOG00000016849	cmss1	99	67.708	ENSGACG00000002798	cmss1	100	67.014	Gasterosteus_aculeatus
ENSPFOG00000016849	cmss1	98	52.669	ENSGAGG00000019861	CMSS1	79	63.366	Gopherus_agassizii
ENSPFOG00000016849	cmss1	71	62.871	ENSGGOG00000014125	CMSS1	77	62.871	Gorilla_gorilla
ENSPFOG00000016849	cmss1	100	76.370	ENSHBUG00000008431	cmss1	100	77.055	Haplochromis_burtoni
ENSPFOG00000016849	cmss1	70	62.000	ENSHGLG00000019481	CMSS1	92	59.565	Heterocephalus_glaber_female
ENSPFOG00000016849	cmss1	70	62.000	ENSHGLG00100010314	CMSS1	90	59.565	Heterocephalus_glaber_male
ENSPFOG00000016849	cmss1	100	66.667	ENSHCOG00000003222	cmss1	100	66.667	Hippocampus_comes
ENSPFOG00000016849	cmss1	100	59.044	ENSIPUG00000011591	cmss1	100	58.562	Ictalurus_punctatus
ENSPFOG00000016849	cmss1	100	52.448	ENSSTOG00000019366	CMSS1	100	51.916	Ictidomys_tridecemlineatus
ENSPFOG00000016849	cmss1	100	53.819	ENSJJAG00000014894	Cmss1	96	58.150	Jaculus_jaculus
ENSPFOG00000016849	cmss1	94	66.171	ENSKMAG00000002390	cmss1	96	64.479	Kryptolebias_marmoratus
ENSPFOG00000016849	cmss1	71	76.961	ENSLBEG00000006298	cmss1	83	76.961	Labrus_bergylta
ENSPFOG00000016849	cmss1	71	63.861	ENSLACG00000009293	CMSS1	88	63.861	Latimeria_chalumnae
ENSPFOG00000016849	cmss1	100	53.608	ENSLOCG00000009391	cmss1	100	51.724	Lepisosteus_oculatus
ENSPFOG00000016849	cmss1	70	63.000	ENSLAFG00000017509	CMSS1	89	63.366	Loxodonta_africana
ENSPFOG00000016849	cmss1	100	52.098	ENSMFAG00000045006	CMSS1	100	51.748	Macaca_fascicularis
ENSPFOG00000016849	cmss1	100	51.748	ENSMMUG00000002939	CMSS1	100	51.399	Macaca_mulatta
ENSPFOG00000016849	cmss1	100	52.098	ENSMNEG00000031315	CMSS1	100	51.748	Macaca_nemestrina
ENSPFOG00000016849	cmss1	100	52.098	ENSMLEG00000033660	CMSS1	100	51.748	Mandrillus_leucophaeus
ENSPFOG00000016849	cmss1	100	75.945	ENSMAMG00000017176	cmss1	100	76.632	Mastacembelus_armatus
ENSPFOG00000016849	cmss1	100	76.027	ENSMZEG00005021886	cmss1	100	78.082	Maylandia_zebra
ENSPFOG00000016849	cmss1	71	61.386	ENSMGAG00000014360	CMSS1	89	61.386	Meleagris_gallopavo
ENSPFOG00000016849	cmss1	100	37.979	ENSMAUG00000020609	Cmss1	100	38.542	Mesocricetus_auratus
ENSPFOG00000016849	cmss1	100	54.167	ENSMICG00000048977	CMSS1	100	51.186	Microcebus_murinus
ENSPFOG00000016849	cmss1	100	51.525	ENSMOCG00000021937	Cmss1	100	51.525	Microtus_ochrogaster
ENSPFOG00000016849	cmss1	71	78.325	ENSMMOG00000019794	cmss1	97	66.797	Mola_mola
ENSPFOG00000016849	cmss1	95	54.044	ENSMODG00000002275	CMSS1	76	63.861	Monodelphis_domestica
ENSPFOG00000016849	cmss1	100	73.810	ENSMALG00000004250	cmss1	100	73.720	Monopterus_albus
ENSPFOG00000016849	cmss1	100	53.846	MGP_CAROLIEiJ_G0020824	Cmss1	100	52.098	Mus_caroli
ENSPFOG00000016849	cmss1	100	53.497	ENSMUSG00000022748	Cmss1	100	51.748	Mus_musculus
ENSPFOG00000016849	cmss1	100	52.721	MGP_PahariEiJ_G0016524	Cmss1	100	51.748	Mus_pahari
ENSPFOG00000016849	cmss1	100	53.147	MGP_SPRETEiJ_G0021724	Cmss1	100	51.399	Mus_spretus
ENSPFOG00000016849	cmss1	70	62.312	ENSMPUG00000011324	CMSS1	78	62.687	Mustela_putorius_furo
ENSPFOG00000016849	cmss1	70	62.376	ENSMLUG00000001131	CMSS1	78	62.745	Myotis_lucifugus
ENSPFOG00000016849	cmss1	100	50.699	ENSNGAG00000020316	Cmss1	100	51.557	Nannospalax_galili
ENSPFOG00000016849	cmss1	100	76.027	ENSNBRG00000003095	cmss1	100	78.082	Neolamprologus_brichardi
ENSPFOG00000016849	cmss1	100	52.797	ENSNLEG00000034172	CMSS1	100	52.448	Nomascus_leucogenys
ENSPFOG00000016849	cmss1	71	53.465	ENSMEUG00000014505	CMSS1	89	53.465	Notamacropus_eugenii
ENSPFOG00000016849	cmss1	100	52.962	ENSOPRG00000002986	CMSS1	100	52.613	Ochotona_princeps
ENSPFOG00000016849	cmss1	100	53.819	ENSODEG00000005226	-	100	52.797	Octodon_degus
ENSPFOG00000016849	cmss1	100	47.203	ENSODEG00000001853	-	100	46.853	Octodon_degus
ENSPFOG00000016849	cmss1	100	47.203	ENSODEG00000009446	-	100	44.755	Octodon_degus
ENSPFOG00000016849	cmss1	100	51.389	ENSODEG00000003558	-	75	61.386	Octodon_degus
ENSPFOG00000016849	cmss1	91	80.843	ENSONIG00000006678	cmss1	99	81.226	Oreochromis_niloticus
ENSPFOG00000016849	cmss1	95	52.206	ENSOANG00000007529	CMSS1	87	60.891	Ornithorhynchus_anatinus
ENSPFOG00000016849	cmss1	87	57.028	ENSOCUG00000025366	CMSS1	73	62.871	Oryctolagus_cuniculus
ENSPFOG00000016849	cmss1	100	73.356	ENSORLG00000020340	cmss1	100	72.664	Oryzias_latipes
ENSPFOG00000016849	cmss1	74	73.709	ENSORLG00020012235	cmss1	90	73.709	Oryzias_latipes_hni
ENSPFOG00000016849	cmss1	93	63.569	ENSORLG00015015551	cmss1	76	73.399	Oryzias_latipes_hsok
ENSPFOG00000016849	cmss1	100	72.945	ENSOMEG00000012555	cmss1	100	74.658	Oryzias_melastigma
ENSPFOG00000016849	cmss1	71	63.861	ENSOGAG00000002045	CMSS1	89	63.861	Otolemur_garnettii
ENSPFOG00000016849	cmss1	71	63.054	ENSOARG00000017899	CMSS1	70	63.054	Ovis_aries
ENSPFOG00000016849	cmss1	71	62.871	ENSPPAG00000038515	CMSS1	74	62.871	Pan_paniscus
ENSPFOG00000016849	cmss1	100	54.861	ENSPPRG00000016767	CMSS1	100	53.147	Panthera_pardus
ENSPFOG00000016849	cmss1	100	54.514	ENSPTIG00000018274	CMSS1	100	52.797	Panthera_tigris_altaica
ENSPFOG00000016849	cmss1	100	52.448	ENSPTRG00000015157	CMSS1	100	52.098	Pan_troglodytes
ENSPFOG00000016849	cmss1	71	63.366	ENSPANG00000019980	CMSS1	80	63.366	Papio_anubis
ENSPFOG00000016849	cmss1	95	61.624	ENSPKIG00000012609	cmss1	96	62.738	Paramormyrops_kingsleyae
ENSPFOG00000016849	cmss1	71	62.871	ENSPSIG00000003849	CMSS1	88	62.871	Pelodiscus_sinensis
ENSPFOG00000016849	cmss1	71	75.980	ENSPMGG00000010286	cmss1	88	75.980	Periophthalmus_magnuspinnatus
ENSPFOG00000016849	cmss1	100	52.265	ENSPEMG00000016384	Cmss1	100	52.098	Peromyscus_maniculatus_bairdii
ENSPFOG00000016849	cmss1	71	50.490	ENSPMAG00000001146	cmss1	99	50.739	Petromyzon_marinus
ENSPFOG00000016849	cmss1	71	62.376	ENSPCIG00000015656	CMSS1	77	62.376	Phascolarctos_cinereus
ENSPFOG00000016849	cmss1	100	99.650	ENSPLAG00000008323	cmss1	100	99.650	Poecilia_latipinna
ENSPFOG00000016849	cmss1	100	98.958	ENSPMEG00000021020	cmss1	100	98.958	Poecilia_mexicana
ENSPFOG00000016849	cmss1	97	94.604	ENSPREG00000007618	cmss1	95	94.604	Poecilia_reticulata
ENSPFOG00000016849	cmss1	100	52.098	ENSPPYG00000013606	CMSS1	100	51.748	Pongo_abelii
ENSPFOG00000016849	cmss1	100	55.208	ENSPCOG00000020035	CMSS1	100	50.847	Propithecus_coquereli
ENSPFOG00000016849	cmss1	100	45.804	ENSPVAG00000017031	CMSS1	100	44.948	Pteropus_vampyrus
ENSPFOG00000016849	cmss1	91	75.940	ENSPNYG00000013428	cmss1	97	78.195	Pundamilia_nyererei
ENSPFOG00000016849	cmss1	100	57.627	ENSPNAG00000007912	cmss1	100	56.419	Pygocentrus_nattereri
ENSPFOG00000016849	cmss1	71	62.871	ENSRNOG00000027888	Cmss1	79	62.871	Rattus_norvegicus
ENSPFOG00000016849	cmss1	100	51.748	ENSRBIG00000037931	CMSS1	100	51.748	Rhinopithecus_bieti
ENSPFOG00000016849	cmss1	100	51.748	ENSRROG00000042910	CMSS1	100	51.748	Rhinopithecus_roxellana
ENSPFOG00000016849	cmss1	84	58.750	ENSSBOG00000030980	CMSS1	77	62.871	Saimiri_boliviensis_boliviensis
ENSPFOG00000016849	cmss1	71	63.366	ENSSHAG00000009321	CMSS1	80	63.366	Sarcophilus_harrisii
ENSPFOG00000016849	cmss1	100	62.414	ENSSFOG00015001509	cmss1	100	61.017	Scleropages_formosus
ENSPFOG00000016849	cmss1	100	75.342	ENSSMAG00000001653	cmss1	100	77.055	Scophthalmus_maximus
ENSPFOG00000016849	cmss1	100	78.276	ENSSDUG00000007719	cmss1	100	79.655	Seriola_dumerili
ENSPFOG00000016849	cmss1	92	74.539	ENSSLDG00000012300	cmss1	91	74.721	Seriola_lalandi_dorsalis
ENSPFOG00000016849	cmss1	100	44.755	ENSSARG00000003584	CMSS1	100	44.056	Sorex_araneus
ENSPFOG00000016849	cmss1	71	61.386	ENSSPUG00000003865	CMSS1	89	61.386	Sphenodon_punctatus
ENSPFOG00000016849	cmss1	96	74.818	ENSSPAG00000019182	cmss1	78	74.242	Stegastes_partitus
ENSPFOG00000016849	cmss1	100	53.819	ENSSSCG00000011970	CMSS1	100	51.916	Sus_scrofa
ENSPFOG00000016849	cmss1	71	59.901	ENSTGUG00000013635	CMSS1	88	59.901	Taeniopygia_guttata
ENSPFOG00000016849	cmss1	100	65.734	ENSTRUG00000015265	cmss1	100	66.434	Takifugu_rubripes
ENSPFOG00000016849	cmss1	71	70.936	ENSTNIG00000002880	cmss1	83	67.686	Tetraodon_nigroviridis
ENSPFOG00000016849	cmss1	100	38.112	ENSTBEG00000016722	CMSS1	100	36.364	Tupaia_belangeri
ENSPFOG00000016849	cmss1	100	51.916	ENSTTRG00000001562	CMSS1	100	51.034	Tursiops_truncatus
ENSPFOG00000016849	cmss1	71	63.366	ENSUAMG00000024209	CMSS1	91	63.366	Ursus_americanus
ENSPFOG00000016849	cmss1	71	62.871	ENSUMAG00000001983	CMSS1	78	62.871	Ursus_maritimus
ENSPFOG00000016849	cmss1	56	61.250	ENSVPAG00000000263	CMSS1	57	61.250	Vicugna_pacos
ENSPFOG00000016849	cmss1	71	61.386	ENSVVUG00000007776	-	80	61.386	Vulpes_vulpes
ENSPFOG00000016849	cmss1	70	62.000	ENSVVUG00000021647	-	82	62.376	Vulpes_vulpes
ENSPFOG00000016849	cmss1	100	53.310	ENSXETG00000011858	cmss1	100	50.350	Xenopus_tropicalis
ENSPFOG00000016849	cmss1	95	87.912	ENSXCOG00000018724	cmss1	89	79.783	Xiphophorus_couchianus
ENSPFOG00000016849	cmss1	93	88.390	ENSXMAG00000011243	cmss1	98	79.783	Xiphophorus_maculatus