EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000017113 (Gene tree)
Gene ID: 103133550
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 8976 bases
Position: chrKI519622.1:2224923-2233898
Accession: 103133550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000017186	SMN	PF06003.12	8.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000017208	-	5725	-	ENSPFOP00000017186	238 (aa)	XP_007545388	A0A087YGN3

Gene Model

Click here to download ENSPFOG00000017113's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000017113's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000017113	smndc1	100	75.630	ENSG00000119953	SMNDC1	100	75.630	Homo_sapiens
ENSPFOG00000017113	smndc1	100	91.597	ENSAPOG00000021772	smndc1	100	91.597	Acanthochromis_polyacanthus
ENSPFOG00000017113	smndc1	100	75.630	ENSAMEG00000005251	SMNDC1	100	75.630	Ailuropoda_melanoleuca
ENSPFOG00000017113	smndc1	100	89.496	ENSACIG00000004819	smndc1	100	89.496	Amphilophus_citrinellus
ENSPFOG00000017113	smndc1	100	91.176	ENSAOCG00000017869	smndc1	100	91.176	Amphiprion_ocellaris
ENSPFOG00000017113	smndc1	100	91.176	ENSAPEG00000007752	smndc1	100	91.176	Amphiprion_percula
ENSPFOG00000017113	smndc1	100	90.756	ENSATEG00000006830	smndc1	100	90.756	Anabas_testudineus
ENSPFOG00000017113	smndc1	83	76.263	ENSAPLG00000004322	SMNDC1	100	76.263	Anas_platyrhynchos
ENSPFOG00000017113	smndc1	100	76.891	ENSACAG00000005983	SMNDC1	100	76.891	Anolis_carolinensis
ENSPFOG00000017113	smndc1	100	75.630	ENSANAG00000032875	SMNDC1	100	75.630	Aotus_nancymaae
ENSPFOG00000017113	smndc1	100	88.655	ENSACLG00000016360	smndc1	100	88.655	Astatotilapia_calliptera
ENSPFOG00000017113	smndc1	100	80.252	ENSAMXG00000020310	smndc1	100	80.252	Astyanax_mexicanus
ENSPFOG00000017113	smndc1	100	75.630	ENSBTAG00000000551	SMNDC1	100	75.630	Bos_taurus
ENSPFOG00000017113	smndc1	100	75.630	ENSCJAG00000018624	SMNDC1	100	75.630	Callithrix_jacchus
ENSPFOG00000017113	smndc1	100	75.630	ENSCAFG00000010720	SMNDC1	100	75.630	Canis_familiaris
ENSPFOG00000017113	smndc1	100	75.630	ENSCAFG00020011913	SMNDC1	100	75.630	Canis_lupus_dingo
ENSPFOG00000017113	smndc1	100	75.630	ENSCHIG00000010604	SMNDC1	100	75.630	Capra_hircus
ENSPFOG00000017113	smndc1	100	75.630	ENSTSYG00000026454	SMNDC1	100	75.630	Carlito_syrichta
ENSPFOG00000017113	smndc1	100	62.083	ENSCAPG00000009132	SMNDC1	100	72.139	Cavia_aperea
ENSPFOG00000017113	smndc1	100	75.630	ENSCPOG00000031666	SMNDC1	100	75.630	Cavia_porcellus
ENSPFOG00000017113	smndc1	100	75.630	ENSCCAG00000021793	SMNDC1	100	75.630	Cebus_capucinus
ENSPFOG00000017113	smndc1	100	75.210	ENSCATG00000035910	SMNDC1	100	75.210	Cercocebus_atys
ENSPFOG00000017113	smndc1	100	75.630	ENSCLAG00000002838	SMNDC1	100	75.630	Chinchilla_lanigera
ENSPFOG00000017113	smndc1	100	75.630	ENSCSAG00000005169	SMNDC1	100	75.630	Chlorocebus_sabaeus
ENSPFOG00000017113	smndc1	81	70.984	ENSCHOG00000002936	SMNDC1	100	70.984	Choloepus_hoffmanni
ENSPFOG00000017113	smndc1	100	76.050	ENSCPBG00000012837	SMNDC1	100	76.050	Chrysemys_picta_bellii
ENSPFOG00000017113	smndc1	100	69.328	ENSCANG00000034620	-	100	69.328	Colobus_angolensis_palliatus
ENSPFOG00000017113	smndc1	100	75.630	ENSCANG00000031720	-	100	75.630	Colobus_angolensis_palliatus
ENSPFOG00000017113	smndc1	100	58.824	ENSCANG00000036994	-	100	58.824	Colobus_angolensis_palliatus
ENSPFOG00000017113	smndc1	100	75.210	ENSCGRG00001012973	Smndc1	100	75.210	Cricetulus_griseus_chok1gshd
ENSPFOG00000017113	smndc1	100	75.210	ENSCGRG00000012396	Smndc1	100	75.210	Cricetulus_griseus_crigri
ENSPFOG00000017113	smndc1	100	86.134	ENSCSEG00000015621	smndc1	100	86.134	Cynoglossus_semilaevis
ENSPFOG00000017113	smndc1	100	92.017	ENSCVAG00000020432	smndc1	100	92.017	Cyprinodon_variegatus
ENSPFOG00000017113	smndc1	100	81.933	ENSDARG00000056235	smndc1	100	81.933	Danio_rerio
ENSPFOG00000017113	smndc1	100	75.630	ENSDNOG00000016387	SMNDC1	83	75.630	Dasypus_novemcinctus
ENSPFOG00000017113	smndc1	100	75.630	ENSDORG00000023715	Smndc1	100	75.630	Dipodomys_ordii
ENSPFOG00000017113	smndc1	95	41.365	FBgn0039977	CG17454	98	41.767	Drosophila_melanogaster
ENSPFOG00000017113	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSPFOG00000017113	smndc1	100	75.630	ENSEASG00005014930	SMNDC1	100	75.630	Equus_asinus_asinus
ENSPFOG00000017113	smndc1	100	75.630	ENSECAG00000029973	SMNDC1	100	75.630	Equus_caballus
ENSPFOG00000017113	smndc1	83	54.545	ENSEEUG00000013407	-	100	54.545	Erinaceus_europaeus
ENSPFOG00000017113	smndc1	100	81.933	ENSELUG00000000227	smndc1	100	81.933	Esox_lucius
ENSPFOG00000017113	smndc1	100	75.630	ENSFCAG00000027353	SMNDC1	100	75.630	Felis_catus
ENSPFOG00000017113	smndc1	100	77.311	ENSFALG00000002306	SMNDC1	100	77.311	Ficedula_albicollis
ENSPFOG00000017113	smndc1	100	75.630	ENSFDAG00000006468	SMNDC1	100	75.630	Fukomys_damarensis
ENSPFOG00000017113	smndc1	100	94.118	ENSFHEG00000020150	smndc1	100	94.118	Fundulus_heteroclitus
ENSPFOG00000017113	smndc1	100	82.773	ENSGMOG00000016585	smndc1	100	82.773	Gadus_morhua
ENSPFOG00000017113	smndc1	100	77.311	ENSGALG00000008561	SMNDC1	100	77.311	Gallus_gallus
ENSPFOG00000017113	smndc1	100	96.639	ENSGAFG00000011582	smndc1	100	96.639	Gambusia_affinis
ENSPFOG00000017113	smndc1	100	87.395	ENSGACG00000009468	smndc1	100	87.395	Gasterosteus_aculeatus
ENSPFOG00000017113	smndc1	100	76.050	ENSGAGG00000024547	SMNDC1	100	76.050	Gopherus_agassizii
ENSPFOG00000017113	smndc1	100	75.630	ENSGGOG00000010071	SMNDC1	100	75.630	Gorilla_gorilla
ENSPFOG00000017113	smndc1	100	88.655	ENSHBUG00000017596	smndc1	100	88.655	Haplochromis_burtoni
ENSPFOG00000017113	smndc1	100	75.630	ENSHGLG00000013390	-	100	75.630	Heterocephalus_glaber_female
ENSPFOG00000017113	smndc1	100	54.918	ENSHGLG00000001157	-	100	55.328	Heterocephalus_glaber_female
ENSPFOG00000017113	smndc1	100	75.630	ENSHGLG00100004814	-	100	75.630	Heterocephalus_glaber_male
ENSPFOG00000017113	smndc1	100	61.066	ENSHGLG00100004278	-	100	59.274	Heterocephalus_glaber_male
ENSPFOG00000017113	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSPFOG00000017113	smndc1	100	81.933	ENSIPUG00000004217	smndc1	100	81.933	Ictalurus_punctatus
ENSPFOG00000017113	smndc1	100	75.630	ENSSTOG00000006088	SMNDC1	100	75.630	Ictidomys_tridecemlineatus
ENSPFOG00000017113	smndc1	100	75.630	ENSJJAG00000019974	Smndc1	100	75.630	Jaculus_jaculus
ENSPFOG00000017113	smndc1	100	90.336	ENSKMAG00000020134	smndc1	100	90.336	Kryptolebias_marmoratus
ENSPFOG00000017113	smndc1	100	89.496	ENSLBEG00000004598	smndc1	100	89.496	Labrus_bergylta
ENSPFOG00000017113	smndc1	100	74.790	ENSLACG00000007784	SMNDC1	100	74.790	Latimeria_chalumnae
ENSPFOG00000017113	smndc1	100	82.773	ENSLOCG00000012355	smndc1	100	82.773	Lepisosteus_oculatus
ENSPFOG00000017113	smndc1	100	75.210	ENSLAFG00000014353	SMNDC1	100	75.210	Loxodonta_africana
ENSPFOG00000017113	smndc1	100	63.025	ENSMFAG00000038381	-	100	63.025	Macaca_fascicularis
ENSPFOG00000017113	smndc1	100	75.630	ENSMFAG00000002433	-	100	75.630	Macaca_fascicularis
ENSPFOG00000017113	smndc1	100	63.025	ENSMMUG00000045875	-	100	63.025	Macaca_mulatta
ENSPFOG00000017113	smndc1	100	75.630	ENSMMUG00000007775	SMNDC1	100	75.630	Macaca_mulatta
ENSPFOG00000017113	smndc1	100	66.387	ENSMNEG00000033853	-	100	66.387	Macaca_nemestrina
ENSPFOG00000017113	smndc1	100	75.630	ENSMNEG00000042963	-	100	75.630	Macaca_nemestrina
ENSPFOG00000017113	smndc1	100	71.130	ENSMLEG00000040236	SMNDC1	100	70.711	Mandrillus_leucophaeus
ENSPFOG00000017113	smndc1	89	86.854	ENSMAMG00000018233	smndc1	87	86.854	Mastacembelus_armatus
ENSPFOG00000017113	smndc1	100	88.655	ENSMZEG00005027510	smndc1	100	88.655	Maylandia_zebra
ENSPFOG00000017113	smndc1	99	68.354	ENSMGAG00000010777	SMNDC1	99	68.354	Meleagris_gallopavo
ENSPFOG00000017113	smndc1	100	75.630	ENSMAUG00000012243	-	100	75.630	Mesocricetus_auratus
ENSPFOG00000017113	smndc1	99	62.025	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSPFOG00000017113	smndc1	100	65.546	ENSMICG00000031640	-	100	65.546	Microcebus_murinus
ENSPFOG00000017113	smndc1	100	75.210	ENSMICG00000027336	-	100	75.210	Microcebus_murinus
ENSPFOG00000017113	smndc1	100	75.210	ENSMOCG00000002458	Smndc1	100	75.210	Microtus_ochrogaster
ENSPFOG00000017113	smndc1	100	87.395	ENSMMOG00000008856	smndc1	100	87.395	Mola_mola
ENSPFOG00000017113	smndc1	100	75.630	ENSMODG00000010542	SMNDC1	100	75.630	Monodelphis_domestica
ENSPFOG00000017113	smndc1	100	87.815	ENSMALG00000017598	smndc1	100	87.815	Monopterus_albus
ENSPFOG00000017113	smndc1	100	75.630	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.630	Mus_caroli
ENSPFOG00000017113	smndc1	100	75.630	ENSMUSG00000025024	Smndc1	100	75.630	Mus_musculus
ENSPFOG00000017113	smndc1	100	75.630	MGP_PahariEiJ_G0014560	Smndc1	100	75.630	Mus_pahari
ENSPFOG00000017113	smndc1	100	75.630	MGP_SPRETEiJ_G0023993	Smndc1	100	75.630	Mus_spretus
ENSPFOG00000017113	smndc1	100	75.630	ENSMPUG00000002089	SMNDC1	100	75.630	Mustela_putorius_furo
ENSPFOG00000017113	smndc1	100	75.630	ENSMLUG00000016007	SMNDC1	100	75.630	Myotis_lucifugus
ENSPFOG00000017113	smndc1	100	76.050	ENSNGAG00000006833	Smndc1	100	76.050	Nannospalax_galili
ENSPFOG00000017113	smndc1	100	89.076	ENSNBRG00000017089	smndc1	100	89.076	Neolamprologus_brichardi
ENSPFOG00000017113	smndc1	100	75.630	ENSNLEG00000015471	SMNDC1	100	75.630	Nomascus_leucogenys
ENSPFOG00000017113	smndc1	70	58.683	ENSMEUG00000010120	-	82	58.683	Notamacropus_eugenii
ENSPFOG00000017113	smndc1	100	75.630	ENSOPRG00000015348	SMNDC1	100	75.630	Ochotona_princeps
ENSPFOG00000017113	smndc1	100	54.202	ENSODEG00000007594	-	100	52.101	Octodon_degus
ENSPFOG00000017113	smndc1	100	89.076	ENSONIG00000000434	smndc1	100	89.076	Oreochromis_niloticus
ENSPFOG00000017113	smndc1	100	76.050	ENSOANG00000001598	SMNDC1	100	76.050	Ornithorhynchus_anatinus
ENSPFOG00000017113	smndc1	100	75.210	ENSOCUG00000008145	-	100	75.210	Oryctolagus_cuniculus
ENSPFOG00000017113	smndc1	100	55.462	ENSOCUG00000012274	-	100	57.983	Oryctolagus_cuniculus
ENSPFOG00000017113	smndc1	100	84.454	ENSORLG00000005934	smndc1	95	84.454	Oryzias_latipes
ENSPFOG00000017113	smndc1	100	84.454	ENSORLG00020008796	smndc1	95	84.454	Oryzias_latipes_hni
ENSPFOG00000017113	smndc1	100	84.034	ENSORLG00015013666	smndc1	100	84.034	Oryzias_latipes_hsok
ENSPFOG00000017113	smndc1	100	84.034	ENSOMEG00000007590	smndc1	100	84.034	Oryzias_melastigma
ENSPFOG00000017113	smndc1	100	75.630	ENSOGAG00000000571	SMNDC1	100	75.630	Otolemur_garnettii
ENSPFOG00000017113	smndc1	100	75.630	ENSOARG00000009500	SMNDC1	100	75.630	Ovis_aries
ENSPFOG00000017113	smndc1	100	75.630	ENSPPAG00000027815	SMNDC1	100	75.630	Pan_paniscus
ENSPFOG00000017113	smndc1	100	75.630	ENSPPRG00000013749	SMNDC1	100	75.630	Panthera_pardus
ENSPFOG00000017113	smndc1	100	75.630	ENSPTIG00000011451	SMNDC1	100	75.630	Panthera_tigris_altaica
ENSPFOG00000017113	smndc1	100	75.630	ENSPTRG00000002937	SMNDC1	100	75.630	Pan_troglodytes
ENSPFOG00000017113	smndc1	100	71.429	ENSPANG00000031346	-	100	71.429	Papio_anubis
ENSPFOG00000017113	smndc1	100	75.630	ENSPANG00000020805	-	100	75.630	Papio_anubis
ENSPFOG00000017113	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSPFOG00000017113	smndc1	100	76.050	ENSPSIG00000012257	SMNDC1	100	76.050	Pelodiscus_sinensis
ENSPFOG00000017113	smndc1	100	81.933	ENSPMGG00000015651	smndc1	100	81.933	Periophthalmus_magnuspinnatus
ENSPFOG00000017113	smndc1	100	75.630	ENSPEMG00000022058	Smndc1	100	75.630	Peromyscus_maniculatus_bairdii
ENSPFOG00000017113	smndc1	100	65.432	ENSPMAG00000007705	smndc1	100	65.021	Petromyzon_marinus
ENSPFOG00000017113	smndc1	100	75.630	ENSPCIG00000018419	SMNDC1	100	75.630	Phascolarctos_cinereus
ENSPFOG00000017113	smndc1	95	56.195	ENSPCIG00000009693	-	98	56.195	Phascolarctos_cinereus
ENSPFOG00000017113	smndc1	100	98.739	ENSPLAG00000010372	smndc1	100	98.739	Poecilia_latipinna
ENSPFOG00000017113	smndc1	100	99.160	ENSPMEG00000012288	smndc1	100	99.160	Poecilia_mexicana
ENSPFOG00000017113	smndc1	100	97.059	ENSPREG00000012279	smndc1	100	97.059	Poecilia_reticulata
ENSPFOG00000017113	smndc1	100	75.630	ENSPPYG00000002643	SMNDC1	100	75.630	Pongo_abelii
ENSPFOG00000017113	smndc1	81	70.984	ENSPCAG00000016183	SMNDC1	100	70.984	Procavia_capensis
ENSPFOG00000017113	smndc1	100	75.210	ENSPCOG00000024343	SMNDC1	100	75.210	Propithecus_coquereli
ENSPFOG00000017113	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSPFOG00000017113	smndc1	83	86.869	ENSPNYG00000024093	smndc1	86	86.869	Pundamilia_nyererei
ENSPFOG00000017113	smndc1	100	78.571	ENSPNAG00000025285	smndc1	100	78.571	Pygocentrus_nattereri
ENSPFOG00000017113	smndc1	100	75.630	ENSRNOG00000014833	Smndc1	100	75.630	Rattus_norvegicus
ENSPFOG00000017113	smndc1	100	75.210	ENSRBIG00000000224	-	100	75.210	Rhinopithecus_bieti
ENSPFOG00000017113	smndc1	100	62.185	ENSRBIG00000032452	-	100	62.185	Rhinopithecus_bieti
ENSPFOG00000017113	smndc1	100	62.185	ENSRROG00000039125	-	100	62.185	Rhinopithecus_roxellana
ENSPFOG00000017113	smndc1	100	75.630	ENSRROG00000044992	-	100	75.630	Rhinopithecus_roxellana
ENSPFOG00000017113	smndc1	100	75.630	ENSSBOG00000026789	SMNDC1	100	75.630	Saimiri_boliviensis_boliviensis
ENSPFOG00000017113	smndc1	100	75.630	ENSSHAG00000015189	SMNDC1	100	75.630	Sarcophilus_harrisii
ENSPFOG00000017113	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSPFOG00000017113	smndc1	100	90.336	ENSSMAG00000020118	smndc1	100	90.336	Scophthalmus_maximus
ENSPFOG00000017113	smndc1	100	90.336	ENSSDUG00000015330	smndc1	100	90.336	Seriola_dumerili
ENSPFOG00000017113	smndc1	100	89.916	ENSSLDG00000017325	smndc1	100	89.916	Seriola_lalandi_dorsalis
ENSPFOG00000017113	smndc1	100	75.630	ENSSARG00000006063	SMNDC1	100	75.630	Sorex_araneus
ENSPFOG00000017113	smndc1	100	77.311	ENSSPUG00000004574	SMNDC1	100	77.311	Sphenodon_punctatus
ENSPFOG00000017113	smndc1	100	89.916	ENSSPAG00000000338	smndc1	100	89.916	Stegastes_partitus
ENSPFOG00000017113	smndc1	100	75.630	ENSSSCG00000030507	SMNDC1	100	75.630	Sus_scrofa
ENSPFOG00000017113	smndc1	100	77.311	ENSTGUG00000010599	SMNDC1	100	77.311	Taeniopygia_guttata
ENSPFOG00000017113	smndc1	100	83.193	ENSTRUG00000023281	smndc1	100	83.193	Takifugu_rubripes
ENSPFOG00000017113	smndc1	100	83.613	ENSTNIG00000013331	smndc1	100	83.613	Tetraodon_nigroviridis
ENSPFOG00000017113	smndc1	100	75.630	ENSTBEG00000014337	SMNDC1	100	75.630	Tupaia_belangeri
ENSPFOG00000017113	smndc1	100	75.630	ENSUAMG00000008142	SMNDC1	100	75.630	Ursus_americanus
ENSPFOG00000017113	smndc1	100	75.630	ENSUMAG00000023722	SMNDC1	100	75.630	Ursus_maritimus
ENSPFOG00000017113	smndc1	83	74.747	ENSVPAG00000003402	SMNDC1	100	74.747	Vicugna_pacos
ENSPFOG00000017113	smndc1	100	75.630	ENSVVUG00000007820	SMNDC1	100	75.630	Vulpes_vulpes
ENSPFOG00000017113	smndc1	57	64.706	ENSXETG00000015415	SMNDC1	96	64.706	Xenopus_tropicalis
ENSPFOG00000017113	smndc1	100	95.798	ENSXCOG00000009159	smndc1	100	95.798	Xiphophorus_couchianus
ENSPFOG00000017113	smndc1	100	96.639	ENSXMAG00000012755	smndc1	100	96.639	Xiphophorus_maculatus