EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000017156 (Gene tree)
Gene ID: -
Gene Symbol: scaf4a
Alias: -
Full Name: SR-related CTD-associated factor 4a
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 11509 bases
Position: chrKI519613.1:3764655-3776163
Accession: ZDB-GENE-030131-9003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000017241	RRM_1	PF00076.22	1.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000017263	-	2856	-	ENSPFOP00000017241	952 (aa)	-	A0A087YGT8

Gene Model

Click here to download ENSPFOG00000017156's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000017156's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000017156	scaf4a	100	90.291	ENSPFOG00000017108	-	93	90.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000017156	scaf4a	67	56.902	ENSAPOG00000019615	scaf4b	76	54.035	Acanthochromis_polyacanthus
ENSPFOG00000017156	scaf4a	97	74.792	ENSAPOG00000002946	scaf4a	86	73.814	Acanthochromis_polyacanthus
ENSPFOG00000017156	scaf4a	67	57.746	ENSAOCG00000010433	scaf4b	79	54.225	Amphiprion_ocellaris
ENSPFOG00000017156	scaf4a	97	75.391	ENSAOCG00000000615	scaf4a	85	74.510	Amphiprion_ocellaris
ENSPFOG00000017156	scaf4a	97	75.078	ENSAPEG00000021229	scaf4a	86	74.200	Amphiprion_percula
ENSPFOG00000017156	scaf4a	67	57.746	ENSAPEG00000010913	scaf4b	79	54.225	Amphiprion_percula
ENSPFOG00000017156	scaf4a	57	58.962	ENSACAG00000002569	SCAF4	70	53.385	Anolis_carolinensis
ENSPFOG00000017156	scaf4a	96	53.479	ENSAMXG00000008585	scaf4a	92	54.078	Astyanax_mexicanus
ENSPFOG00000017156	scaf4a	64	57.339	ENSCAFG00020026019	SCAF4	74	60.000	Canis_lupus_dingo
ENSPFOG00000017156	scaf4a	52	79.167	ENSCPOG00000012443	SCAF4	69	54.798	Cavia_porcellus
ENSPFOG00000017156	scaf4a	57	69.942	ENSCGRG00001020821	Scaf4	55	60.741	Cricetulus_griseus_chok1gshd
ENSPFOG00000017156	scaf4a	57	69.942	ENSCGRG00000014360	Scaf4	55	60.000	Cricetulus_griseus_crigri
ENSPFOG00000017156	scaf4a	97	64.447	ENSCSEG00000019549	scaf4a	86	63.397	Cynoglossus_semilaevis
ENSPFOG00000017156	scaf4a	55	55.197	ENSCVAG00000009142	scaf4b	53	72.727	Cyprinodon_variegatus
ENSPFOG00000017156	scaf4a	96	53.063	ENSDARG00000077093	scaf4a	83	54.083	Danio_rerio
ENSPFOG00000017156	scaf4a	64	83.854	ENSELUG00000009909	scaf4a	77	82.063	Esox_lucius
ENSPFOG00000017156	scaf4a	66	55.556	ENSFHEG00000007634	scaf4b	76	55.872	Fundulus_heteroclitus
ENSPFOG00000017156	scaf4a	99	82.627	ENSFHEG00000017866	scaf4a	74	83.813	Fundulus_heteroclitus
ENSPFOG00000017156	scaf4a	76	94.490	ENSGAFG00000019460	scaf4a	80	94.890	Gambusia_affinis
ENSPFOG00000017156	scaf4a	85	72.184	ENSGACG00000020580	scaf4a	84	70.507	Gasterosteus_aculeatus
ENSPFOG00000017156	scaf4a	76	79.642	ENSHBUG00000007920	scaf4a	93	70.289	Haplochromis_burtoni
ENSPFOG00000017156	scaf4a	91	69.811	ENSIPUG00000011285	scaf4	93	56.522	Ictalurus_punctatus
ENSPFOG00000017156	scaf4a	53	72.561	ENSSTOG00000004450	SCAF4	53	60.000	Ictidomys_tridecemlineatus
ENSPFOG00000017156	scaf4a	94	71.970	ENSLBEG00000014675	scaf4a	85	71.016	Labrus_bergylta
ENSPFOG00000017156	scaf4a	57	52.402	ENSLACG00000001394	SCAF8	53	51.205	Latimeria_chalumnae
ENSPFOG00000017156	scaf4a	52	48.000	ENSLOCG00000009162	scaf4a	92	51.079	Lepisosteus_oculatus
ENSPFOG00000017156	scaf4a	54	69.942	ENSLAFG00000010710	SCAF4	67	56.932	Loxodonta_africana
ENSPFOG00000017156	scaf4a	97	74.691	ENSMZEG00005024349	scaf4a	86	72.671	Maylandia_zebra
ENSPFOG00000017156	scaf4a	52	75.472	ENSMOCG00000012087	Scaf4	75	50.706	Microtus_ochrogaster
ENSPFOG00000017156	scaf4a	55	80.339	ENSMALG00000013825	scaf4a	78	80.339	Monopterus_albus
ENSPFOG00000017156	scaf4a	53	73.171	MGP_CAROLIEiJ_G0020944	Scaf4	67	53.349	Mus_caroli
ENSPFOG00000017156	scaf4a	53	73.780	ENSMUSG00000022983	Scaf4	67	54.146	Mus_musculus
ENSPFOG00000017156	scaf4a	53	73.171	MGP_PahariEiJ_G0016649	Scaf4	68	53.521	Mus_pahari
ENSPFOG00000017156	scaf4a	53	73.780	MGP_SPRETEiJ_G0021850	Scaf4	69	52.064	Mus_spretus
ENSPFOG00000017156	scaf4a	53	70.833	ENSMLUG00000011472	SCAF4	68	54.315	Myotis_lucifugus
ENSPFOG00000017156	scaf4a	97	68.046	ENSONIG00000004687	scaf4a	96	68.133	Oreochromis_niloticus
ENSPFOG00000017156	scaf4a	55	72.561	ENSOCUG00000008336	SCAF4	75	55.639	Oryctolagus_cuniculus
ENSPFOG00000017156	scaf4a	100	74.774	ENSORLG00000004384	scaf4a	85	77.793	Oryzias_latipes
ENSPFOG00000017156	scaf4a	57	55.556	ENSORLG00000003420	scaf4b	56	74.638	Oryzias_latipes
ENSPFOG00000017156	scaf4a	94	75.124	ENSORLG00020011857	scaf4a	85	76.487	Oryzias_latipes_hni
ENSPFOG00000017156	scaf4a	57	54.878	ENSORLG00020013853	scaf4b	56	75.362	Oryzias_latipes_hni
ENSPFOG00000017156	scaf4a	100	65.838	ENSORLG00015017880	scaf4a	86	78.069	Oryzias_latipes_hsok
ENSPFOG00000017156	scaf4a	100	66.092	ENSOMEG00000014482	scaf4a	85	77.655	Oryzias_melastigma
ENSPFOG00000017156	scaf4a	72	58.696	ENSPKIG00000022408	scaf4a	99	63.859	Paramormyrops_kingsleyae
ENSPFOG00000017156	scaf4a	78	65.248	ENSPMGG00000016741	scaf4a	73	66.784	Periophthalmus_magnuspinnatus
ENSPFOG00000017156	scaf4a	64	55.439	ENSPLAG00000004403	-	51	70.629	Poecilia_latipinna
ENSPFOG00000017156	scaf4a	78	91.656	ENSPLAG00000001972	scaf4a	88	96.823	Poecilia_latipinna
ENSPFOG00000017156	scaf4a	64	55.052	ENSPMEG00000006666	-	51	72.028	Poecilia_mexicana
ENSPFOG00000017156	scaf4a	67	56.184	ENSPREG00000013510	scaf4b	55	58.919	Poecilia_reticulata
ENSPFOG00000017156	scaf4a	82	56.250	ENSPNAG00000016892	scaf4a	88	55.245	Pygocentrus_nattereri
ENSPFOG00000017156	scaf4a	53	73.780	ENSRNOG00000002104	Scaf4	64	56.168	Rattus_norvegicus
ENSPFOG00000017156	scaf4a	52	48.263	ENSSFOG00015006338	scaf4a	90	48.552	Scleropages_formosus
ENSPFOG00000017156	scaf4a	97	66.105	ENSSMAG00000017901	scaf4a	86	66.667	Scophthalmus_maximus
ENSPFOG00000017156	scaf4a	97	73.856	ENSSDUG00000012918	scaf4a	86	71.759	Seriola_dumerili
ENSPFOG00000017156	scaf4a	97	73.856	ENSSLDG00000021671	scaf4a	85	72.004	Seriola_lalandi_dorsalis
ENSPFOG00000017156	scaf4a	54	73.171	ENSSSCG00000021023	SCAF4	70	54.912	Sus_scrofa
ENSPFOG00000017156	scaf4a	55	59.813	ENSTGUG00000013464	SCAF4	52	61.390	Taeniopygia_guttata
ENSPFOG00000017156	scaf4a	72	46.475	ENSTRUG00000009536	-	55	74.820	Takifugu_rubripes
ENSPFOG00000017156	scaf4a	87	65.582	ENSTNIG00000009945	scaf4a	58	65.287	Tetraodon_nigroviridis
ENSPFOG00000017156	scaf4a	72	49.560	ENSXETG00000007351	scaf4	61	62.903	Xenopus_tropicalis