EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000001671 (Gene tree)
Gene ID: 111837123
Gene Symbol: SNRPC (1 of many)
Alias: -
Full Name: U1 small nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 5266 bases
Position: chrPGUA01000060.1:416367-421632
Accession: 111837123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000014695	zf-U1	PF06220.12	1.6e-22	1	1
ENSPKIP00000014711	zf-U1	PF06220.12	9.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000039147	SNRPC (1 of many)-201	2627	-	ENSPKIP00000014695	159 (aa)	XP_023654730	UPI000CD5E610
ENSPKIT00000039164	SNRPC (1 of many)-202	2179	-	ENSPKIP00000014711	157 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000001671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000001671's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000001671	SNRPC	59	86.170	ENSPKIG00000003136	snrpc	100	81.290

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000001671	SNRPC	100	72.956	ENSANAG00000019726	-	92	75.625	Aotus_nancymaae
ENSPKIG00000001671	SNRPC	100	78.750	ENSANAG00000019157	-	100	78.750	Aotus_nancymaae
ENSPKIG00000001671	SNRPC	100	57.862	ENSANAG00000021444	-	60	68.421	Aotus_nancymaae
ENSPKIG00000001671	SNRPC	100	67.925	ENSANAG00000021026	-	100	65.000	Aotus_nancymaae
ENSPKIG00000001671	SNRPC	100	79.245	ENSANAG00000007843	-	100	81.250	Aotus_nancymaae
ENSPKIG00000001671	SNRPC	99	73.077	ENSANAG00000020588	-	92	74.843	Aotus_nancymaae
ENSPKIG00000001671	SNRPC	100	84.906	ENSAMXG00000032641	snrpc	87	84.906	Astyanax_mexicanus
ENSPKIG00000001671	SNRPC	100	79.245	ENSCJAG00000043055	-	100	81.250	Callithrix_jacchus
ENSPKIG00000001671	SNRPC	100	78.616	ENSCAFG00000031775	-	100	80.000	Canis_familiaris
ENSPKIG00000001671	SNRPC	100	68.125	ENSCAFG00000025525	-	100	54.396	Canis_familiaris
ENSPKIG00000001671	SNRPC	100	78.616	ENSCAFG00020017383	-	100	80.000	Canis_lupus_dingo
ENSPKIG00000001671	SNRPC	99	71.975	ENSCAFG00020009944	-	90	73.418	Canis_lupus_dingo
ENSPKIG00000001671	SNRPC	100	61.635	ENSCHIG00000005039	-	100	53.933	Capra_hircus
ENSPKIG00000001671	SNRPC	100	65.409	ENSTSYG00000025721	-	100	66.250	Carlito_syrichta
ENSPKIG00000001671	SNRPC	80	78.740	ENSTSYG00000029745	-	64	78.740	Carlito_syrichta
ENSPKIG00000001671	SNRPC	90	77.465	ENSCAPG00000005161	SNRPC	100	79.720	Cavia_aperea
ENSPKIG00000001671	SNRPC	99	66.242	ENSCCAG00000026624	-	66	66.242	Cebus_capucinus
ENSPKIG00000001671	SNRPC	100	58.491	ENSCCAG00000028293	-	100	58.750	Cebus_capucinus
ENSPKIG00000001671	SNRPC	100	75.472	ENSCCAG00000036059	-	89	77.500	Cebus_capucinus
ENSPKIG00000001671	SNRPC	100	72.611	ENSCCAG00000022751	-	96	74.684	Cebus_capucinus
ENSPKIG00000001671	SNRPC	99	69.872	ENSCLAG00000010242	-	96	69.620	Chinchilla_lanigera
ENSPKIG00000001671	SNRPC	99	71.154	ENSCHOG00000011439	SNRPC	88	70.701	Choloepus_hoffmanni
ENSPKIG00000001671	SNRPC	90	77.465	ENSCANG00000028035	SNRPC	100	81.875	Colobus_angolensis_palliatus
ENSPKIG00000001671	SNRPC	100	67.500	ENSCGRG00001021483	-	100	71.250	Cricetulus_griseus_chok1gshd
ENSPKIG00000001671	SNRPC	100	83.648	ENSDARG00000009871	snrpc	100	83.648	Danio_rerio
ENSPKIG00000001671	SNRPC	51	87.654	ENSDNOG00000042403	-	75	84.211	Dasypus_novemcinctus
ENSPKIG00000001671	SNRPC	50	87.179	ENSDORG00000005955	Snrpc	66	68.790	Dipodomys_ordii
ENSPKIG00000001671	SNRPC	50	85.897	ENSETEG00000008756	-	75	87.179	Echinops_telfairi
ENSPKIG00000001671	SNRPC	97	76.923	ENSETEG00000011265	-	99	76.923	Echinops_telfairi
ENSPKIG00000001671	SNRPC	99	69.231	ENSEEUG00000014633	SNRPC	90	68.987	Erinaceus_europaeus
ENSPKIG00000001671	SNRPC	100	76.730	ENSELUG00000000815	SNRPC	100	76.730	Esox_lucius
ENSPKIG00000001671	SNRPC	100	73.620	ENSELUG00000020489	snrpc	59	89.362	Esox_lucius
ENSPKIG00000001671	SNRPC	100	78.750	ENSGALG00000002773	SNRPC	100	81.366	Gallus_gallus
ENSPKIG00000001671	SNRPC	100	72.327	ENSHGLG00000017741	-	100	72.327	Heterocephalus_glaber_female
ENSPKIG00000001671	SNRPC	87	64.029	ENSHGLG00000005871	-	100	63.750	Heterocephalus_glaber_female
ENSPKIG00000001671	SNRPC	100	72.327	ENSHGLG00100010786	-	100	72.327	Heterocephalus_glaber_male
ENSPKIG00000001671	SNRPC	100	75.472	ENSHGLG00100017764	-	100	77.500	Heterocephalus_glaber_male
ENSPKIG00000001671	SNRPC	100	85.535	ENSIPUG00000024851	snrpc	100	85.535	Ictalurus_punctatus
ENSPKIG00000001671	SNRPC	90	77.465	ENSMFAG00000031764	-	100	81.875	Macaca_fascicularis
ENSPKIG00000001671	SNRPC	100	79.874	ENSMMUG00000039415	-	100	81.875	Macaca_mulatta
ENSPKIG00000001671	SNRPC	100	71.698	ENSMMUG00000045425	-	100	73.750	Macaca_mulatta
ENSPKIG00000001671	SNRPC	100	74.522	ENSMLEG00000040224	-	90	74.522	Mandrillus_leucophaeus
ENSPKIG00000001671	SNRPC	98	58.442	ENSMLEG00000039724	-	81	59.355	Mandrillus_leucophaeus
ENSPKIG00000001671	SNRPC	100	75.000	ENSMGAG00000006054	SNRPC	100	81.250	Meleagris_gallopavo
ENSPKIG00000001671	SNRPC	100	79.245	ENSMICG00000032183	-	100	81.250	Microcebus_murinus
ENSPKIG00000001671	SNRPC	99	69.231	ENSMICG00000036552	-	87	71.338	Microcebus_murinus
ENSPKIG00000001671	SNRPC	100	81.761	ENSMICG00000007339	-	100	82.390	Microcebus_murinus
ENSPKIG00000001671	SNRPC	63	67.000	ENSMODG00000025263	-	100	63.354	Monodelphis_domestica
ENSPKIG00000001671	SNRPC	100	64.151	ENSMALG00000001197	snrpc	100	66.667	Monopterus_albus
ENSPKIG00000001671	SNRPC	91	76.224	ENSMUSG00000024217	Snrpc	100	81.250	Mus_musculus
ENSPKIG00000001671	SNRPC	90	77.465	ENSMEUG00000009300	SNRPC	100	80.420	Notamacropus_eugenii
ENSPKIG00000001671	SNRPC	61	75.258	ENSODEG00000006008	-	91	79.688	Octodon_degus
ENSPKIG00000001671	SNRPC	91	74.830	ENSOANG00000003405	SNRPC	100	77.181	Ornithorhynchus_anatinus
ENSPKIG00000001671	SNRPC	60	80.000	ENSOCUG00000023292	-	100	80.625	Oryctolagus_cuniculus
ENSPKIG00000001671	SNRPC	52	67.470	ENSORLG00000007308	snrpc	97	77.778	Oryzias_latipes
ENSPKIG00000001671	SNRPC	100	78.616	ENSOGAG00000026269	-	100	80.625	Otolemur_garnettii
ENSPKIG00000001671	SNRPC	97	62.338	ENSOGAG00000028405	-	99	70.968	Otolemur_garnettii
ENSPKIG00000001671	SNRPC	100	55.975	ENSPPRG00000010967	-	89	48.447	Panthera_pardus
ENSPKIG00000001671	SNRPC	96	48.026	ENSPPRG00000016017	-	62	43.396	Panthera_pardus
ENSPKIG00000001671	SNRPC	57	73.626	ENSPTIG00000013329	-	61	73.684	Panthera_tigris_altaica
ENSPKIG00000001671	SNRPC	100	70.440	ENSPANG00000018228	-	94	72.500	Papio_anubis
ENSPKIG00000001671	SNRPC	58	63.736	ENSPMGG00000022162	snrpc	100	75.641	Periophthalmus_magnuspinnatus
ENSPKIG00000001671	SNRPC	100	69.811	ENSPEMG00000002763	-	100	70.000	Peromyscus_maniculatus_bairdii
ENSPKIG00000001671	SNRPC	84	65.414	ENSPMAG00000000602	snrpc	60	68.421	Petromyzon_marinus
ENSPKIG00000001671	SNRPC	58	62.366	ENSPREG00000013017	snrpc	79	53.939	Poecilia_reticulata
ENSPKIG00000001671	SNRPC	51	87.654	ENSPPYG00000029902	-	81	88.889	Pongo_abelii
ENSPKIG00000001671	SNRPC	85	57.463	ENSPNYG00000004900	snrpc	100	56.051	Pundamilia_nyererei
ENSPKIG00000001671	SNRPC	100	79.874	ENSPNAG00000012799	snrpc	100	77.987	Pygocentrus_nattereri
ENSPKIG00000001671	SNRPC	100	72.327	ENSRBIG00000036353	-	83	73.750	Rhinopithecus_bieti
ENSPKIG00000001671	SNRPC	99	66.667	ENSSBOG00000032882	-	93	66.879	Saimiri_boliviensis_boliviensis
ENSPKIG00000001671	SNRPC	94	65.772	ENSSBOG00000032361	-	78	70.312	Saimiri_boliviensis_boliviensis
ENSPKIG00000001671	SNRPC	97	67.742	ENSSBOG00000023189	-	90	67.742	Saimiri_boliviensis_boliviensis
ENSPKIG00000001671	SNRPC	63	67.000	ENSSHAG00000002972	-	100	63.354	Sarcophilus_harrisii
ENSPKIG00000001671	SNRPC	100	79.245	ENSSFOG00015019150	snrpc	100	79.245	Scleropages_formosus
ENSPKIG00000001671	SNRPC	58	91.304	ENSSFOG00015022422	snrpc	99	88.387	Scleropages_formosus
ENSPKIG00000001671	SNRPC	100	60.377	ENSSARG00000008970	SNRPC	89	62.500	Sorex_araneus
ENSPKIG00000001671	SNRPC	100	63.522	ENSTRUG00000021651	snrpc	100	63.415	Takifugu_rubripes
ENSPKIG00000001671	SNRPC	100	73.292	ENSTNIG00000018307	snrpc	100	73.292	Tetraodon_nigroviridis
ENSPKIG00000001671	SNRPC	60	73.684	ENSTBEG00000015356	-	67	77.895	Tupaia_belangeri
ENSPKIG00000001671	SNRPC	90	61.972	ENSTBEG00000016759	-	79	61.972	Tupaia_belangeri
ENSPKIG00000001671	SNRPC	97	74.839	ENSTBEG00000013022	-	99	76.282	Tupaia_belangeri
ENSPKIG00000001671	SNRPC	90	57.042	ENSVPAG00000003106	SNRPC	79	59.441	Vicugna_pacos
ENSPKIG00000001671	SNRPC	98	75.325	ENSVVUG00000010467	-	87	77.707	Vulpes_vulpes