EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000001839 (Gene tree)
Gene ID: 111857573
Gene Symbol: lsm1
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 12492 bases
Position: chrPGUA01000034.1:2829390-2841881
Accession: 111857573
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000014984	LSM	PF01423.22	1.7e-15	1	1
ENSPKIP00000014975	LSM	PF01423.22	2.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000039432	-	2366	-	ENSPKIP00000014975	134 (aa)	-	-
ENSPKIT00000039441	-	2242	-	ENSPKIP00000014984	133 (aa)	XP_023694345	UPI000CD62C14

Gene Model

Click here to download ENSPKIG00000001839's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000001839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000001839	lsm1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707
ENSPKIG00000001839	lsm1	62	35.714	ENSPKIG00000006092	lsm8	73	35.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000001839	lsm1	100	90.226	ENSG00000175324	LSM1	100	90.226	Homo_sapiens
ENSPKIG00000001839	lsm1	100	87.218	ENSAPOG00000010833	lsm1	100	87.218	Acanthochromis_polyacanthus
ENSPKIG00000001839	lsm1	100	90.226	ENSAMEG00000011141	LSM1	100	90.226	Ailuropoda_melanoleuca
ENSPKIG00000001839	lsm1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSPKIG00000001839	lsm1	100	87.218	ENSAOCG00000017997	-	100	87.218	Amphiprion_ocellaris
ENSPKIG00000001839	lsm1	100	87.218	ENSAOCG00000017096	lsm1	100	87.218	Amphiprion_ocellaris
ENSPKIG00000001839	lsm1	100	87.218	ENSAPEG00000011669	lsm1	100	87.218	Amphiprion_percula
ENSPKIG00000001839	lsm1	100	87.218	ENSATEG00000022266	lsm1	100	87.218	Anabas_testudineus
ENSPKIG00000001839	lsm1	100	90.226	ENSANAG00000027785	LSM1	100	90.226	Aotus_nancymaae
ENSPKIG00000001839	lsm1	100	87.218	ENSACLG00000011400	lsm1	100	87.218	Astatotilapia_calliptera
ENSPKIG00000001839	lsm1	100	84.211	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
ENSPKIG00000001839	lsm1	100	89.474	ENSBTAG00000001612	LSM1	100	89.474	Bos_taurus
ENSPKIG00000001839	lsm1	87	53.390	WBGene00003076	lsm-1	90	53.390	Caenorhabditis_elegans
ENSPKIG00000001839	lsm1	100	89.474	ENSCJAG00000048015	LSM1	100	89.474	Callithrix_jacchus
ENSPKIG00000001839	lsm1	100	90.226	ENSCAFG00000006113	LSM1	100	90.226	Canis_familiaris
ENSPKIG00000001839	lsm1	100	90.226	ENSCAFG00020001822	LSM1	100	90.226	Canis_lupus_dingo
ENSPKIG00000001839	lsm1	100	90.226	ENSCHIG00000013194	LSM1	100	90.226	Capra_hircus
ENSPKIG00000001839	lsm1	100	90.226	ENSTSYG00000010394	LSM1	100	90.226	Carlito_syrichta
ENSPKIG00000001839	lsm1	100	90.226	ENSCPOG00000032671	LSM1	100	90.226	Cavia_porcellus
ENSPKIG00000001839	lsm1	100	90.226	ENSCCAG00000037171	LSM1	100	90.226	Cebus_capucinus
ENSPKIG00000001839	lsm1	100	90.226	ENSCATG00000020377	LSM1	100	90.226	Cercocebus_atys
ENSPKIG00000001839	lsm1	100	88.722	ENSCLAG00000001137	LSM1	100	88.722	Chinchilla_lanigera
ENSPKIG00000001839	lsm1	100	90.226	ENSCSAG00000015485	LSM1	100	90.226	Chlorocebus_sabaeus
ENSPKIG00000001839	lsm1	100	89.474	ENSCHOG00000006030	LSM1	100	89.474	Choloepus_hoffmanni
ENSPKIG00000001839	lsm1	95	83.465	ENSCPBG00000006569	LSM1	80	89.831	Chrysemys_picta_bellii
ENSPKIG00000001839	lsm1	99	68.182	ENSCING00000013536	-	99	68.182	Ciona_intestinalis
ENSPKIG00000001839	lsm1	100	90.226	ENSCANG00000019173	LSM1	100	90.226	Colobus_angolensis_palliatus
ENSPKIG00000001839	lsm1	80	75.676	ENSCGRG00001002259	-	97	75.676	Cricetulus_griseus_chok1gshd
ENSPKIG00000001839	lsm1	100	89.474	ENSCGRG00001024560	-	100	89.474	Cricetulus_griseus_chok1gshd
ENSPKIG00000001839	lsm1	100	89.474	ENSCGRG00000006554	-	100	89.474	Cricetulus_griseus_crigri
ENSPKIG00000001839	lsm1	80	75.676	ENSCGRG00000013603	-	97	75.676	Cricetulus_griseus_crigri
ENSPKIG00000001839	lsm1	100	86.466	ENSCSEG00000010570	lsm1	92	86.466	Cynoglossus_semilaevis
ENSPKIG00000001839	lsm1	100	85.714	ENSCSEG00000008319	lsm1	92	85.714	Cynoglossus_semilaevis
ENSPKIG00000001839	lsm1	100	85.714	ENSCVAG00000003871	lsm1	100	85.714	Cyprinodon_variegatus
ENSPKIG00000001839	lsm1	100	83.459	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
ENSPKIG00000001839	lsm1	100	89.474	ENSDNOG00000032911	-	100	89.474	Dasypus_novemcinctus
ENSPKIG00000001839	lsm1	100	90.226	ENSDNOG00000046387	-	100	90.226	Dasypus_novemcinctus
ENSPKIG00000001839	lsm1	89	71.186	ENSDNOG00000046620	-	99	71.186	Dasypus_novemcinctus
ENSPKIG00000001839	lsm1	100	84.211	ENSDNOG00000030989	-	100	84.211	Dasypus_novemcinctus
ENSPKIG00000001839	lsm1	100	90.226	ENSDORG00000028172	Lsm1	100	90.226	Dipodomys_ordii
ENSPKIG00000001839	lsm1	93	62.903	FBgn0261067	LSm1	91	62.903	Drosophila_melanogaster
ENSPKIG00000001839	lsm1	100	88.722	ENSEASG00005016677	LSM1	100	88.722	Equus_asinus_asinus
ENSPKIG00000001839	lsm1	100	88.722	ENSECAG00000010461	LSM1	100	88.722	Equus_caballus
ENSPKIG00000001839	lsm1	72	83.333	ENSEEUG00000015181	LSM1	97	83.333	Erinaceus_europaeus
ENSPKIG00000001839	lsm1	100	89.474	ENSELUG00000002322	lsm1	100	89.474	Esox_lucius
ENSPKIG00000001839	lsm1	100	84.962	ENSELUG00000023374	lsm1	100	84.962	Esox_lucius
ENSPKIG00000001839	lsm1	100	90.226	ENSFCAG00000039335	LSM1	100	90.226	Felis_catus
ENSPKIG00000001839	lsm1	89	88.983	ENSFALG00000006723	LSM1	100	89.831	Ficedula_albicollis
ENSPKIG00000001839	lsm1	100	90.226	ENSFDAG00000007658	LSM1	100	90.226	Fukomys_damarensis
ENSPKIG00000001839	lsm1	100	85.714	ENSFHEG00000009556	lsm1	100	85.714	Fundulus_heteroclitus
ENSPKIG00000001839	lsm1	100	86.466	ENSGMOG00000016651	lsm1	98	86.466	Gadus_morhua
ENSPKIG00000001839	lsm1	100	88.722	ENSGALG00000003245	LSM1	100	88.722	Gallus_gallus
ENSPKIG00000001839	lsm1	100	85.714	ENSGAFG00000011355	lsm1	100	85.714	Gambusia_affinis
ENSPKIG00000001839	lsm1	100	87.218	ENSGACG00000011763	lsm1	98	87.218	Gasterosteus_aculeatus
ENSPKIG00000001839	lsm1	100	90.226	ENSGAGG00000024065	LSM1	100	90.226	Gopherus_agassizii
ENSPKIG00000001839	lsm1	100	90.226	ENSGGOG00000022658	LSM1	100	90.226	Gorilla_gorilla
ENSPKIG00000001839	lsm1	100	87.218	ENSHBUG00000010897	lsm1	100	87.218	Haplochromis_burtoni
ENSPKIG00000001839	lsm1	100	90.226	ENSHGLG00000005711	LSM1	100	90.226	Heterocephalus_glaber_female
ENSPKIG00000001839	lsm1	100	71.429	ENSHGLG00000017574	-	93	79.091	Heterocephalus_glaber_female
ENSPKIG00000001839	lsm1	100	90.226	ENSHGLG00100017660	LSM1	100	90.226	Heterocephalus_glaber_male
ENSPKIG00000001839	lsm1	100	71.429	ENSHGLG00100012152	-	93	79.091	Heterocephalus_glaber_male
ENSPKIG00000001839	lsm1	100	84.962	ENSHCOG00000017233	lsm1	100	84.962	Hippocampus_comes
ENSPKIG00000001839	lsm1	100	81.955	ENSIPUG00000002312	LSM1	100	81.955	Ictalurus_punctatus
ENSPKIG00000001839	lsm1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSPKIG00000001839	lsm1	100	89.474	ENSJJAG00000014605	-	100	89.474	Jaculus_jaculus
ENSPKIG00000001839	lsm1	100	87.218	ENSKMAG00000003016	lsm1	100	87.218	Kryptolebias_marmoratus
ENSPKIG00000001839	lsm1	100	86.466	ENSLBEG00000022352	lsm1	100	86.466	Labrus_bergylta
ENSPKIG00000001839	lsm1	89	88.136	ENSLACG00000010947	LSM1	100	86.777	Latimeria_chalumnae
ENSPKIG00000001839	lsm1	100	92.481	ENSLOCG00000015149	lsm1	100	92.481	Lepisosteus_oculatus
ENSPKIG00000001839	lsm1	100	90.226	ENSLAFG00000003534	LSM1	100	90.226	Loxodonta_africana
ENSPKIG00000001839	lsm1	100	90.226	ENSMFAG00000032661	LSM1	100	90.226	Macaca_fascicularis
ENSPKIG00000001839	lsm1	100	90.226	ENSMLEG00000034535	LSM1	100	90.226	Mandrillus_leucophaeus
ENSPKIG00000001839	lsm1	100	86.466	ENSMAMG00000007464	lsm1	100	86.466	Mastacembelus_armatus
ENSPKIG00000001839	lsm1	100	87.218	ENSMZEG00005010321	lsm1	100	87.218	Maylandia_zebra
ENSPKIG00000001839	lsm1	100	88.722	ENSMGAG00000002125	LSM1	100	88.722	Meleagris_gallopavo
ENSPKIG00000001839	lsm1	100	90.977	ENSMICG00000030726	LSM1	100	90.977	Microcebus_murinus
ENSPKIG00000001839	lsm1	100	89.474	ENSMOCG00000022817	Lsm1	100	89.474	Microtus_ochrogaster
ENSPKIG00000001839	lsm1	100	87.218	ENSMMOG00000015466	lsm1	100	87.218	Mola_mola
ENSPKIG00000001839	lsm1	100	90.226	ENSMODG00000010732	-	100	90.226	Monodelphis_domestica
ENSPKIG00000001839	lsm1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSPKIG00000001839	lsm1	100	89.474	MGP_CAROLIEiJ_G0030930	Lsm1	100	89.474	Mus_caroli
ENSPKIG00000001839	lsm1	100	89.474	ENSMUSG00000037296	Lsm1	100	89.474	Mus_musculus
ENSPKIG00000001839	lsm1	100	89.474	MGP_PahariEiJ_G0021400	Lsm1	100	89.474	Mus_pahari
ENSPKIG00000001839	lsm1	100	89.474	MGP_SPRETEiJ_G0032049	Lsm1	100	89.474	Mus_spretus
ENSPKIG00000001839	lsm1	100	90.977	ENSMPUG00000009883	LSM1	100	90.977	Mustela_putorius_furo
ENSPKIG00000001839	lsm1	100	90.226	ENSMLUG00000003734	LSM1	100	90.226	Myotis_lucifugus
ENSPKIG00000001839	lsm1	100	89.474	ENSNGAG00000003753	Lsm1	100	89.474	Nannospalax_galili
ENSPKIG00000001839	lsm1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSPKIG00000001839	lsm1	100	90.226	ENSNLEG00000029390	LSM1	100	90.226	Nomascus_leucogenys
ENSPKIG00000001839	lsm1	100	90.226	ENSMEUG00000014077	LSM1	100	90.226	Notamacropus_eugenii
ENSPKIG00000001839	lsm1	88	85.470	ENSOPRG00000000333	LSM1	100	85.470	Ochotona_princeps
ENSPKIG00000001839	lsm1	100	90.226	ENSODEG00000004834	LSM1	100	90.226	Octodon_degus
ENSPKIG00000001839	lsm1	100	87.218	ENSONIG00000010782	lsm1	100	87.218	Oreochromis_niloticus
ENSPKIG00000001839	lsm1	100	90.226	ENSOANG00000003256	LSM1	100	90.226	Ornithorhynchus_anatinus
ENSPKIG00000001839	lsm1	100	90.226	ENSOCUG00000015399	LSM1	100	90.226	Oryctolagus_cuniculus
ENSPKIG00000001839	lsm1	100	88.722	ENSORLG00000030288	lsm1	100	88.722	Oryzias_latipes
ENSPKIG00000001839	lsm1	100	87.218	ENSORLG00020006213	-	86	87.218	Oryzias_latipes_hni
ENSPKIG00000001839	lsm1	100	88.722	ENSORLG00020003941	lsm1	100	88.722	Oryzias_latipes_hni
ENSPKIG00000001839	lsm1	100	88.722	ENSORLG00015018350	lsm1	100	88.722	Oryzias_latipes_hsok
ENSPKIG00000001839	lsm1	100	87.218	ENSOMEG00000012454	lsm1	100	87.218	Oryzias_melastigma
ENSPKIG00000001839	lsm1	100	90.226	ENSOGAG00000015161	LSM1	100	90.226	Otolemur_garnettii
ENSPKIG00000001839	lsm1	100	90.226	ENSOARG00000001317	LSM1	100	90.226	Ovis_aries
ENSPKIG00000001839	lsm1	100	90.226	ENSPPAG00000032279	LSM1	100	90.226	Pan_paniscus
ENSPKIG00000001839	lsm1	100	90.226	ENSPPRG00000014172	-	100	90.226	Panthera_pardus
ENSPKIG00000001839	lsm1	100	90.226	ENSPTIG00000010289	LSM1	100	90.226	Panthera_tigris_altaica
ENSPKIG00000001839	lsm1	100	90.226	ENSPTRG00000020169	LSM1	100	90.226	Pan_troglodytes
ENSPKIG00000001839	lsm1	100	90.226	ENSPANG00000008814	LSM1	100	90.226	Papio_anubis
ENSPKIG00000001839	lsm1	98	83.846	ENSPSIG00000012563	LSM1	99	83.846	Pelodiscus_sinensis
ENSPKIG00000001839	lsm1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSPKIG00000001839	lsm1	85	76.991	ENSPMAG00000002671	lsm1	100	76.991	Petromyzon_marinus
ENSPKIG00000001839	lsm1	100	90.226	ENSPCIG00000008880	LSM1	100	90.226	Phascolarctos_cinereus
ENSPKIG00000001839	lsm1	100	85.714	ENSPFOG00000016029	lsm1	100	85.714	Poecilia_formosa
ENSPKIG00000001839	lsm1	100	85.714	ENSPLAG00000007879	lsm1	100	85.714	Poecilia_latipinna
ENSPKIG00000001839	lsm1	100	85.714	ENSPMEG00000023550	lsm1	100	85.714	Poecilia_mexicana
ENSPKIG00000001839	lsm1	100	85.714	ENSPREG00000009574	lsm1	100	85.714	Poecilia_reticulata
ENSPKIG00000001839	lsm1	100	90.226	ENSPPYG00000018521	LSM1	100	90.226	Pongo_abelii
ENSPKIG00000001839	lsm1	100	90.226	ENSPCOG00000020901	-	100	90.226	Propithecus_coquereli
ENSPKIG00000001839	lsm1	100	90.226	ENSPVAG00000006016	LSM1	100	90.226	Pteropus_vampyrus
ENSPKIG00000001839	lsm1	100	87.218	ENSPNYG00000018067	lsm1	100	87.218	Pundamilia_nyererei
ENSPKIG00000001839	lsm1	100	83.459	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
ENSPKIG00000001839	lsm1	100	88.722	ENSRNOG00000015375	Lsm1	100	88.722	Rattus_norvegicus
ENSPKIG00000001839	lsm1	100	90.226	ENSRBIG00000027449	LSM1	100	90.226	Rhinopithecus_bieti
ENSPKIG00000001839	lsm1	100	90.226	ENSRROG00000036074	LSM1	100	90.226	Rhinopithecus_roxellana
ENSPKIG00000001839	lsm1	83	42.241	YJL124C	LSM1	67	42.241	Saccharomyces_cerevisiae
ENSPKIG00000001839	lsm1	100	90.226	ENSSHAG00000017260	LSM1	100	90.226	Sarcophilus_harrisii
ENSPKIG00000001839	lsm1	100	96.241	ENSSFOG00015019528	lsm1	100	96.241	Scleropages_formosus
ENSPKIG00000001839	lsm1	100	87.218	ENSSMAG00000004930	lsm1	100	87.218	Scophthalmus_maximus
ENSPKIG00000001839	lsm1	100	86.466	ENSSDUG00000021823	lsm1	100	86.466	Seriola_dumerili
ENSPKIG00000001839	lsm1	100	86.466	ENSSLDG00000012154	lsm1	100	86.466	Seriola_lalandi_dorsalis
ENSPKIG00000001839	lsm1	100	90.226	ENSSPUG00000014878	LSM1	100	90.226	Sphenodon_punctatus
ENSPKIG00000001839	lsm1	100	86.466	ENSSPAG00000020548	lsm1	100	86.466	Stegastes_partitus
ENSPKIG00000001839	lsm1	100	90.226	ENSSSCG00000039058	LSM1	100	90.226	Sus_scrofa
ENSPKIG00000001839	lsm1	100	89.474	ENSTGUG00000004793	LSM1	100	89.474	Taeniopygia_guttata
ENSPKIG00000001839	lsm1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSPKIG00000001839	lsm1	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSPKIG00000001839	lsm1	88	86.325	ENSTBEG00000015884	LSM1	100	86.325	Tupaia_belangeri
ENSPKIG00000001839	lsm1	100	90.226	ENSTTRG00000004482	LSM1	100	90.226	Tursiops_truncatus
ENSPKIG00000001839	lsm1	100	90.226	ENSUAMG00000004103	LSM1	100	90.226	Ursus_americanus
ENSPKIG00000001839	lsm1	100	90.226	ENSUMAG00000009132	LSM1	100	90.226	Ursus_maritimus
ENSPKIG00000001839	lsm1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSPKIG00000001839	lsm1	61	71.605	ENSVVUG00000014880	-	86	71.605	Vulpes_vulpes
ENSPKIG00000001839	lsm1	100	90.226	ENSVVUG00000020191	LSM1	100	90.226	Vulpes_vulpes
ENSPKIG00000001839	lsm1	100	85.401	ENSXETG00000009004	lsm1	100	85.401	Xenopus_tropicalis
ENSPKIG00000001839	lsm1	100	84.962	ENSXCOG00000015631	lsm1	100	84.962	Xiphophorus_couchianus
ENSPKIG00000001839	lsm1	100	84.962	ENSXMAG00000026637	lsm1	100	84.962	Xiphophorus_maculatus