EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000002054 (Gene tree)
Gene ID: 111856229
Gene Symbol: srsf5a
Alias: -
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 21217 bases
Position: chrPGUA01000304.1:222655-243871
Accession: 111856229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000015281	RRM_5	PF13893.6	8.9e-07	1	1
ENSPKIP00000015314	RRM_5	PF13893.6	8.9e-07	1	1
ENSPKIP00000015296	RRM_5	PF13893.6	9.4e-07	1	1
ENSPKIP00000015281	RRM_1	PF00076.22	4.3e-34	1	2
ENSPKIP00000015281	RRM_1	PF00076.22	4.3e-34	2	2
ENSPKIP00000015314	RRM_1	PF00076.22	4.3e-34	1	2
ENSPKIP00000015314	RRM_1	PF00076.22	4.3e-34	2	2
ENSPKIP00000015296	RRM_1	PF00076.22	4.9e-34	1	2
ENSPKIP00000015296	RRM_1	PF00076.22	4.9e-34	2	2
ENSPKIP00000015281	RRM_3	PF08777.11	2.3e-08	1	1
ENSPKIP00000015314	RRM_3	PF08777.11	2.3e-08	1	1
ENSPKIP00000015296	RRM_3	PF08777.11	2.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000039777	-	995	-	ENSPKIP00000015314	274 (aa)	XP_023691783	UPI000CD65C14
ENSPKIT00000039743	-	5194	-	ENSPKIP00000015281	274 (aa)	XP_023691783	UPI000CD65C14
ENSPKIT00000039759	-	3740	-	ENSPKIP00000015296	285 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000002054's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03040	Spliceosome	KEGG
pki05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000002054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000002054	srsf5a	66	62.637	ENSPKIG00000015703	-	95	54.777
ENSPKIG00000002054	srsf5a	64	37.569	ENSPKIG00000023787	srsf9	67	39.560
ENSPKIG00000002054	srsf5a	97	54.698	ENSPKIG00000018463	-	66	73.134
ENSPKIG00000002054	srsf5a	63	42.458	ENSPKIG00000012857	srsf1b	67	45.251
ENSPKIG00000002054	srsf5a	64	41.209	ENSPKIG00000024851	SRSF9	67	37.186
ENSPKIG00000002054	srsf5a	63	41.899	ENSPKIG00000007204	srsf1a	71	44.134

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000002054	srsf5a	68	86.559	ENSAPOG00000017395	srsf5a	62	85.864	Acanthochromis_polyacanthus
ENSPKIG00000002054	srsf5a	93	67.059	ENSACIG00000011892	srsf5a	96	82.836	Amphilophus_citrinellus
ENSPKIG00000002054	srsf5a	68	87.634	ENSAOCG00000014967	srsf5a	62	86.316	Amphiprion_ocellaris
ENSPKIG00000002054	srsf5a	68	87.634	ENSAPEG00000009297	srsf5a	62	86.316	Amphiprion_percula
ENSPKIG00000002054	srsf5a	68	88.235	ENSATEG00000000198	srsf5a	65	87.368	Anabas_testudineus
ENSPKIG00000002054	srsf5a	68	77.128	ENSAPLG00000002469	-	70	77.128	Anas_platyrhynchos
ENSPKIG00000002054	srsf5a	68	77.957	ENSACAG00000029015	-	68	77.419	Anolis_carolinensis
ENSPKIG00000002054	srsf5a	68	82.199	ENSACLG00000027166	srsf5a	65	85.340	Astatotilapia_calliptera
ENSPKIG00000002054	srsf5a	68	91.398	ENSAMXG00000030476	srsf5a	67	90.323	Astyanax_mexicanus
ENSPKIG00000002054	srsf5a	68	81.283	ENSCPBG00000021518	-	70	80.749	Chrysemys_picta_bellii
ENSPKIG00000002054	srsf5a	68	55.102	ENSCSAVG00000011376	-	79	53.140	Ciona_savignyi
ENSPKIG00000002054	srsf5a	68	83.938	ENSCSEG00000008109	srsf5a	95	59.683	Cynoglossus_semilaevis
ENSPKIG00000002054	srsf5a	66	76.596	ENSCVAG00000016982	srsf5a	96	74.436	Cyprinodon_variegatus
ENSPKIG00000002054	srsf5a	69	91.053	ENSDARG00000029818	srsf5a	100	82.963	Danio_rerio
ENSPKIG00000002054	srsf5a	68	87.047	ENSELUG00000020439	srsf5a	62	89.637	Esox_lucius
ENSPKIG00000002054	srsf5a	68	77.419	ENSFALG00000005098	-	64	78.495	Ficedula_albicollis
ENSPKIG00000002054	srsf5a	68	74.000	ENSFHEG00000003955	srsf5a	97	68.966	Fundulus_heteroclitus
ENSPKIG00000002054	srsf5a	68	86.022	ENSGMOG00000000869	srsf5a	94	85.484	Gadus_morhua
ENSPKIG00000002054	srsf5a	72	77.041	ENSGALG00000033259	SRSF5A	74	72.811	Gallus_gallus
ENSPKIG00000002054	srsf5a	68	72.581	ENSGAFG00000018237	srsf5a	54	72.581	Gambusia_affinis
ENSPKIG00000002054	srsf5a	68	85.484	ENSGACG00000011761	srsf5a	70	86.559	Gasterosteus_aculeatus
ENSPKIG00000002054	srsf5a	68	81.283	ENSGAGG00000007312	-	70	80.749	Gopherus_agassizii
ENSPKIG00000002054	srsf5a	68	85.263	ENSHBUG00000014048	srsf5a	64	82.234	Haplochromis_burtoni
ENSPKIG00000002054	srsf5a	68	87.097	ENSHCOG00000017557	srsf5a	62	87.097	Hippocampus_comes
ENSPKIG00000002054	srsf5a	68	89.474	ENSIPUG00000003439	srsf5a	69	88.947	Ictalurus_punctatus
ENSPKIG00000002054	srsf5a	68	79.787	ENSKMAG00000014937	srsf5a	89	68.041	Kryptolebias_marmoratus
ENSPKIG00000002054	srsf5a	68	82.051	ENSLBEG00000017153	srsf5a	74	82.564	Labrus_bergylta
ENSPKIG00000002054	srsf5a	68	84.946	ENSLACG00000017874	-	70	86.559	Latimeria_chalumnae
ENSPKIG00000002054	srsf5a	68	92.473	ENSLOCG00000014075	srsf5a	61	91.398	Lepisosteus_oculatus
ENSPKIG00000002054	srsf5a	68	87.097	ENSMAMG00000000192	srsf5a	65	87.634	Mastacembelus_armatus
ENSPKIG00000002054	srsf5a	68	85.263	ENSMZEG00005010485	srsf5a	64	82.234	Maylandia_zebra
ENSPKIG00000002054	srsf5a	72	75.879	ENSMGAG00000011888	-	96	75.000	Meleagris_gallopavo
ENSPKIG00000002054	srsf5a	68	86.559	ENSMMOG00000009793	srsf5a	61	87.166	Mola_mola
ENSPKIG00000002054	srsf5a	68	81.720	ENSMALG00000021194	srsf5a	63	81.183	Monopterus_albus
ENSPKIG00000002054	srsf5a	68	84.127	ENSNBRG00000000771	srsf5a	64	82.653	Neolamprologus_brichardi
ENSPKIG00000002054	srsf5a	68	84.127	ENSONIG00000019583	srsf5a	64	82.653	Oreochromis_niloticus
ENSPKIG00000002054	srsf5a	69	84.127	ENSORLG00000009268	srsf5a	67	85.027	Oryzias_latipes
ENSPKIG00000002054	srsf5a	69	84.127	ENSORLG00020003281	srsf5	67	85.027	Oryzias_latipes_hni
ENSPKIG00000002054	srsf5a	69	84.127	ENSORLG00015023075	srsf5	67	85.027	Oryzias_latipes_hsok
ENSPKIG00000002054	srsf5a	68	85.484	ENSOMEG00000000628	srsf5a	66	86.559	Oryzias_melastigma
ENSPKIG00000002054	srsf5a	68	79.679	ENSPSIG00000008238	-	69	77.540	Pelodiscus_sinensis
ENSPKIG00000002054	srsf5a	69	78.947	ENSPMGG00000020125	srsf5a	83	61.837	Periophthalmus_magnuspinnatus
ENSPKIG00000002054	srsf5a	68	79.581	ENSPFOG00000022993	srsf5a	60	77.665	Poecilia_formosa
ENSPKIG00000002054	srsf5a	68	79.474	ENSPLAG00000005508	srsf5a	59	77.551	Poecilia_latipinna
ENSPKIG00000002054	srsf5a	68	79.581	ENSPMEG00000016339	srsf5a	60	77.665	Poecilia_mexicana
ENSPKIG00000002054	srsf5a	68	79.167	ENSPREG00000018091	srsf5a	61	77.273	Poecilia_reticulata
ENSPKIG00000002054	srsf5a	68	85.263	ENSPNYG00000021245	srsf5a	64	82.234	Pundamilia_nyererei
ENSPKIG00000002054	srsf5a	68	89.785	ENSPNAG00000021333	srsf5a	66	89.247	Pygocentrus_nattereri
ENSPKIG00000002054	srsf5a	68	93.548	ENSSFOG00015008377	srsf5	66	93.548	Scleropages_formosus
ENSPKIG00000002054	srsf5a	68	81.000	ENSSMAG00000010899	srsf5a	66	81.500	Scophthalmus_maximus
ENSPKIG00000002054	srsf5a	68	86.559	ENSSDUG00000006103	srsf5a	91	75.451	Seriola_dumerili
ENSPKIG00000002054	srsf5a	68	86.559	ENSSLDG00000004146	srsf5a	90	75.451	Seriola_lalandi_dorsalis
ENSPKIG00000002054	srsf5a	68	75.269	ENSSPUG00000002052	-	68	74.731	Sphenodon_punctatus
ENSPKIG00000002054	srsf5a	68	88.172	ENSSPAG00000002821	srsf5a	63	87.634	Stegastes_partitus
ENSPKIG00000002054	srsf5a	68	78.495	ENSTGUG00000011492	-	68	78.495	Taeniopygia_guttata
ENSPKIG00000002054	srsf5a	68	81.771	ENSTRUG00000022908	srsf5a	65	83.854	Takifugu_rubripes
ENSPKIG00000002054	srsf5a	68	80.952	ENSXETG00000017937	srsf5a	72	81.481	Xenopus_tropicalis
ENSPKIG00000002054	srsf5a	68	75.401	ENSXCOG00000015338	srsf5a	61	77.720	Xiphophorus_couchianus
ENSPKIG00000002054	srsf5a	68	78.756	ENSXMAG00000012823	srsf5a	61	76.884	Xiphophorus_maculatus