EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000002582 (Gene tree)
Gene ID: 111843845
Gene Symbol: cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 16397 bases
Position: chrPGUA01000014.1:4005698-4022094
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000016120	CPSF_A	PF03178.15	5e-94	1	1
ENSPKIP00000016320	CPSF_A	PF03178.15	1.5e-93	1	1
ENSPKIP00000016170	CPSF_A	PF03178.15	1.9e-92	1	1
ENSPKIP00000016247	CPSF_A	PF03178.15	2.1e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000040733	-	4885	-	ENSPKIP00000016247	1350 (aa)	-	-
ENSPKIT00000040653	-	4789	-	ENSPKIP00000016170	1318 (aa)	-	-
ENSPKIT00000040809	-	4326	-	ENSPKIP00000016320	1441 (aa)	-	-
ENSPKIT00000040602	-	4717	-	ENSPKIP00000016120	1477 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000002582's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000002582's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000002582	cpsf1	100	80.862	ENSG00000071894	CPSF1	100	81.481	Homo_sapiens
ENSPKIG00000002582	cpsf1	100	86.100	ENSAPOG00000019621	cpsf1	100	86.081	Acanthochromis_polyacanthus
ENSPKIG00000002582	cpsf1	100	79.606	ENSAMEG00000005557	CPSF1	99	79.957	Ailuropoda_melanoleuca
ENSPKIG00000002582	cpsf1	100	86.126	ENSACIG00000006112	cpsf1	100	86.238	Amphilophus_citrinellus
ENSPKIG00000002582	cpsf1	100	86.983	ENSAOCG00000007120	cpsf1	100	86.708	Amphiprion_ocellaris
ENSPKIG00000002582	cpsf1	100	87.603	ENSAPEG00000005755	cpsf1	100	87.603	Amphiprion_percula
ENSPKIG00000002582	cpsf1	100	85.999	ENSATEG00000011097	cpsf1	100	85.965	Anabas_testudineus
ENSPKIG00000002582	cpsf1	93	76.649	ENSACAG00000009655	CPSF1	100	76.427	Anolis_carolinensis
ENSPKIG00000002582	cpsf1	100	81.316	ENSANAG00000036514	CPSF1	100	80.913	Aotus_nancymaae
ENSPKIG00000002582	cpsf1	100	86.095	ENSACLG00000012231	cpsf1	99	86.086	Astatotilapia_calliptera
ENSPKIG00000002582	cpsf1	100	81.323	ENSAMXG00000008485	cpsf1	100	81.146	Astyanax_mexicanus
ENSPKIG00000002582	cpsf1	100	79.598	ENSBTAG00000008355	CPSF1	100	80.101	Bos_taurus
ENSPKIG00000002582	cpsf1	100	32.782	WBGene00022301	cpsf-1	99	39.886	Caenorhabditis_elegans
ENSPKIG00000002582	cpsf1	100	81.770	ENSCJAG00000021421	CPSF1	100	80.913	Callithrix_jacchus
ENSPKIG00000002582	cpsf1	100	80.425	ENSCAFG00000001600	CPSF1	100	80.648	Canis_familiaris
ENSPKIG00000002582	cpsf1	100	80.425	ENSCAFG00020020821	CPSF1	100	80.041	Canis_lupus_dingo
ENSPKIG00000002582	cpsf1	100	76.783	ENSCHIG00000015833	CPSF1	100	76.401	Capra_hircus
ENSPKIG00000002582	cpsf1	100	81.653	ENSTSYG00000028560	CPSF1	100	81.481	Carlito_syrichta
ENSPKIG00000002582	cpsf1	100	81.335	ENSCAPG00000014921	CPSF1	99	80.706	Cavia_aperea
ENSPKIG00000002582	cpsf1	100	81.335	ENSCPOG00000011448	CPSF1	100	79.668	Cavia_porcellus
ENSPKIG00000002582	cpsf1	100	81.653	ENSCCAG00000037658	CPSF1	100	81.651	Cebus_capucinus
ENSPKIG00000002582	cpsf1	100	80.819	ENSCATG00000037234	CPSF1	100	81.481	Cercocebus_atys
ENSPKIG00000002582	cpsf1	100	81.184	ENSCLAG00000012166	CPSF1	100	80.761	Chinchilla_lanigera
ENSPKIG00000002582	cpsf1	100	81.350	ENSCSAG00000008502	CPSF1	100	80.705	Chlorocebus_sabaeus
ENSPKIG00000002582	cpsf1	99	82.402	ENSCPBG00000018910	CPSF1	96	81.939	Chrysemys_picta_bellii
ENSPKIG00000002582	cpsf1	96	48.006	ENSCING00000000514	-	100	47.863	Ciona_intestinalis
ENSPKIG00000002582	cpsf1	99	48.429	ENSCSAVG00000002293	-	98	51.643	Ciona_savignyi
ENSPKIG00000002582	cpsf1	100	77.795	ENSCANG00000032760	CPSF1	100	81.944	Colobus_angolensis_palliatus
ENSPKIG00000002582	cpsf1	100	81.032	ENSCGRG00001016344	Cpsf1	100	80.484	Cricetulus_griseus_chok1gshd
ENSPKIG00000002582	cpsf1	100	79.287	ENSCGRG00000003118	Cpsf1	100	78.893	Cricetulus_griseus_crigri
ENSPKIG00000002582	cpsf1	100	85.584	ENSCSEG00000013464	cpsf1	100	84.834	Cynoglossus_semilaevis
ENSPKIG00000002582	cpsf1	93	87.097	ENSCVAG00000014059	cpsf1	100	79.167	Cyprinodon_variegatus
ENSPKIG00000002582	cpsf1	100	87.818	ENSDARG00000034178	cpsf1	100	88.094	Danio_rerio
ENSPKIG00000002582	cpsf1	56	82.709	ENSDNOG00000043654	CPSF1	94	82.133	Dasypus_novemcinctus
ENSPKIG00000002582	cpsf1	100	80.349	ENSDORG00000006278	Cpsf1	99	81.066	Dipodomys_ordii
ENSPKIG00000002582	cpsf1	100	44.482	FBgn0024698	Cpsf160	100	44.415	Drosophila_melanogaster
ENSPKIG00000002582	cpsf1	81	87.248	ENSETEG00000006022	CPSF1	83	87.248	Echinops_telfairi
ENSPKIG00000002582	cpsf1	100	81.184	ENSEASG00005010774	CPSF1	100	80.525	Equus_asinus_asinus
ENSPKIG00000002582	cpsf1	100	81.108	ENSECAG00000022209	CPSF1	100	80.456	Equus_caballus
ENSPKIG00000002582	cpsf1	100	81.122	ENSEEUG00000000471	CPSF1	100	80.055	Erinaceus_europaeus
ENSPKIG00000002582	cpsf1	100	86.037	ENSELUG00000012271	cpsf1	100	85.969	Esox_lucius
ENSPKIG00000002582	cpsf1	100	81.411	ENSFDAG00000016060	CPSF1	100	80.969	Fukomys_damarensis
ENSPKIG00000002582	cpsf1	100	84.159	ENSFHEG00000016801	cpsf1	100	84.091	Fundulus_heteroclitus
ENSPKIG00000002582	cpsf1	100	85.272	ENSGMOG00000000796	cpsf1	100	85.262	Gadus_morhua
ENSPKIG00000002582	cpsf1	94	85.714	ENSGAFG00000018890	cpsf1	99	85.714	Gambusia_affinis
ENSPKIG00000002582	cpsf1	100	86.381	ENSGACG00000008703	cpsf1	100	86.176	Gasterosteus_aculeatus
ENSPKIG00000002582	cpsf1	100	78.852	ENSGAGG00000004276	CPSF1	98	82.845	Gopherus_agassizii
ENSPKIG00000002582	cpsf1	100	80.999	ENSGGOG00000016185	CPSF1	100	81.481	Gorilla_gorilla
ENSPKIG00000002582	cpsf1	100	87.718	ENSHBUG00000018900	cpsf1	100	87.206	Haplochromis_burtoni
ENSPKIG00000002582	cpsf1	100	81.411	ENSHGLG00000016139	CPSF1	100	81.038	Heterocephalus_glaber_female
ENSPKIG00000002582	cpsf1	100	81.335	ENSHGLG00100009750	CPSF1	100	80.969	Heterocephalus_glaber_male
ENSPKIG00000002582	cpsf1	100	84.057	ENSHCOG00000018509	cpsf1	100	83.899	Hippocampus_comes
ENSPKIG00000002582	cpsf1	100	85.450	ENSIPUG00000011259	cpsf1	100	85.096	Ictalurus_punctatus
ENSPKIG00000002582	cpsf1	100	80.769	ENSSTOG00000009957	CPSF1	98	80.846	Ictidomys_tridecemlineatus
ENSPKIG00000002582	cpsf1	100	81.032	ENSJJAG00000023002	Cpsf1	100	80.638	Jaculus_jaculus
ENSPKIG00000002582	cpsf1	91	90.909	ENSKMAG00000001940	cpsf1	99	90.909	Kryptolebias_marmoratus
ENSPKIG00000002582	cpsf1	100	84.716	ENSLBEG00000003601	cpsf1	100	84.573	Labrus_bergylta
ENSPKIG00000002582	cpsf1	91	77.097	ENSLACG00000000233	CPSF1	92	80.383	Latimeria_chalumnae
ENSPKIG00000002582	cpsf1	100	85.336	ENSLOCG00000008484	cpsf1	100	85.034	Lepisosteus_oculatus
ENSPKIG00000002582	cpsf1	100	80.621	ENSLAFG00000022601	CPSF1	99	80.880	Loxodonta_africana
ENSPKIG00000002582	cpsf1	100	80.895	ENSMFAG00000037013	CPSF1	100	81.481	Macaca_fascicularis
ENSPKIG00000002582	cpsf1	100	80.895	ENSMMUG00000007380	CPSF1	100	81.481	Macaca_mulatta
ENSPKIG00000002582	cpsf1	100	80.895	ENSMNEG00000043564	CPSF1	100	81.481	Macaca_nemestrina
ENSPKIG00000002582	cpsf1	100	80.895	ENSMLEG00000043010	CPSF1	100	81.481	Mandrillus_leucophaeus
ENSPKIG00000002582	cpsf1	100	85.830	ENSMAMG00000003803	cpsf1	100	85.608	Mastacembelus_armatus
ENSPKIG00000002582	cpsf1	100	85.064	ENSMZEG00005001168	cpsf1	100	84.743	Maylandia_zebra
ENSPKIG00000002582	cpsf1	100	80.956	ENSMAUG00000003601	Cpsf1	100	80.484	Mesocricetus_auratus
ENSPKIG00000002582	cpsf1	100	81.032	ENSMICG00000015767	CPSF1	100	80.484	Microcebus_murinus
ENSPKIG00000002582	cpsf1	100	80.880	ENSMOCG00000022758	Cpsf1	100	80.415	Microtus_ochrogaster
ENSPKIG00000002582	cpsf1	100	86.884	ENSMMOG00000021245	cpsf1	100	86.574	Mola_mola
ENSPKIG00000002582	cpsf1	100	80.650	ENSMODG00000010755	CPSF1	100	80.454	Monodelphis_domestica
ENSPKIG00000002582	cpsf1	100	85.541	ENSMALG00000020545	cpsf1	100	85.386	Monopterus_albus
ENSPKIG00000002582	cpsf1	100	80.956	MGP_CAROLIEiJ_G0019936	Cpsf1	100	80.415	Mus_caroli
ENSPKIG00000002582	cpsf1	100	80.956	ENSMUSG00000034022	Cpsf1	100	80.415	Mus_musculus
ENSPKIG00000002582	cpsf1	100	81.108	MGP_PahariEiJ_G0019946	Cpsf1	100	80.623	Mus_pahari
ENSPKIG00000002582	cpsf1	100	80.956	MGP_SPRETEiJ_G0020839	Cpsf1	100	80.415	Mus_spretus
ENSPKIG00000002582	cpsf1	99	79.985	ENSMPUG00000006419	CPSF1	93	80.857	Mustela_putorius_furo
ENSPKIG00000002582	cpsf1	100	80.880	ENSNGAG00000022460	Cpsf1	100	80.415	Nannospalax_galili
ENSPKIG00000002582	cpsf1	94	93.306	ENSNBRG00000000813	cpsf1	98	93.306	Neolamprologus_brichardi
ENSPKIG00000002582	cpsf1	82	89.809	ENSNLEG00000010633	-	94	89.809	Nomascus_leucogenys
ENSPKIG00000002582	cpsf1	84	88.372	ENSMEUG00000014922	CPSF1	84	88.372	Notamacropus_eugenii
ENSPKIG00000002582	cpsf1	66	87.831	ENSOPRG00000004693	-	70	87.831	Ochotona_princeps
ENSPKIG00000002582	cpsf1	100	81.259	ENSODEG00000013995	CPSF1	100	80.900	Octodon_degus
ENSPKIG00000002582	cpsf1	100	88.191	ENSONIG00000007676	cpsf1	100	87.983	Oreochromis_niloticus
ENSPKIG00000002582	cpsf1	65	80.714	ENSOANG00000010716	CPSF1	91	80.714	Ornithorhynchus_anatinus
ENSPKIG00000002582	cpsf1	100	84.878	ENSORLG00000013544	cpsf1	100	84.636	Oryzias_latipes
ENSPKIG00000002582	cpsf1	100	84.804	ENSORLG00020021693	cpsf1	100	84.704	Oryzias_latipes_hni
ENSPKIG00000002582	cpsf1	100	84.804	ENSORLG00015009979	cpsf1	100	84.636	Oryzias_latipes_hsok
ENSPKIG00000002582	cpsf1	100	85.193	ENSOMEG00000011849	cpsf1	100	85.024	Oryzias_melastigma
ENSPKIG00000002582	cpsf1	100	81.350	ENSOGAG00000000315	CPSF1	100	80.636	Otolemur_garnettii
ENSPKIG00000002582	cpsf1	100	81.014	ENSPPAG00000019280	CPSF1	100	83.258	Pan_paniscus
ENSPKIG00000002582	cpsf1	100	79.510	ENSPTRG00000051253	-	100	83.258	Pan_troglodytes
ENSPKIG00000002582	cpsf1	100	81.014	ENSPTRG00000049288	-	100	83.258	Pan_troglodytes
ENSPKIG00000002582	cpsf1	100	80.895	ENSPANG00000015005	CPSF1	100	81.481	Papio_anubis
ENSPKIG00000002582	cpsf1	100	80.650	ENSPCIG00000009035	CPSF1	99	84.130	Phascolarctos_cinereus
ENSPKIG00000002582	cpsf1	100	83.666	ENSPFOG00000012870	cpsf1	100	83.491	Poecilia_formosa
ENSPKIG00000002582	cpsf1	100	83.432	ENSPREG00000016307	cpsf1	100	83.367	Poecilia_reticulata
ENSPKIG00000002582	cpsf1	100	73.430	ENSPPYG00000018973	CPSF1	100	73.513	Pongo_abelii
ENSPKIG00000002582	cpsf1	94	85.795	ENSPCAG00000011541	CPSF1	93	85.795	Procavia_capensis
ENSPKIG00000002582	cpsf1	100	77.593	ENSPCOG00000020001	CPSF1	100	81.019	Propithecus_coquereli
ENSPKIG00000002582	cpsf1	91	88.406	ENSPVAG00000006761	CPSF1	91	88.857	Pteropus_vampyrus
ENSPKIG00000002582	cpsf1	100	86.398	ENSPNYG00000004906	cpsf1	100	86.007	Pundamilia_nyererei
ENSPKIG00000002582	cpsf1	100	84.451	ENSPNAG00000024395	cpsf1	100	84.221	Pygocentrus_nattereri
ENSPKIG00000002582	cpsf1	100	81.032	ENSRNOG00000030705	Cpsf1	100	80.484	Rattus_norvegicus
ENSPKIG00000002582	cpsf1	100	80.743	ENSRBIG00000044907	CPSF1	100	81.944	Rhinopithecus_bieti
ENSPKIG00000002582	cpsf1	100	80.819	ENSRROG00000044861	CPSF1	100	81.944	Rhinopithecus_roxellana
ENSPKIG00000002582	cpsf1	100	81.543	ENSSBOG00000027177	CPSF1	99	81.615	Saimiri_boliviensis_boliviensis
ENSPKIG00000002582	cpsf1	100	80.514	ENSSHAG00000006500	CPSF1	100	80.179	Sarcophilus_harrisii
ENSPKIG00000002582	cpsf1	100	93.046	ENSSFOG00015004606	cpsf1	100	92.784	Scleropages_formosus
ENSPKIG00000002582	cpsf1	100	85.328	ENSSMAG00000020547	cpsf1	100	85.037	Scophthalmus_maximus
ENSPKIG00000002582	cpsf1	100	88.150	ENSSDUG00000001100	cpsf1	100	87.872	Seriola_dumerili
ENSPKIG00000002582	cpsf1	100	88.141	ENSSLDG00000003619	cpsf1	100	87.933	Seriola_lalandi_dorsalis
ENSPKIG00000002582	cpsf1	94	77.518	ENSSARG00000003643	CPSF1	92	77.438	Sorex_araneus
ENSPKIG00000002582	cpsf1	100	83.359	ENSSPUG00000014396	CPSF1	99	83.597	Sphenodon_punctatus
ENSPKIG00000002582	cpsf1	100	86.361	ENSSPAG00000005349	cpsf1	100	86.275	Stegastes_partitus
ENSPKIG00000002582	cpsf1	100	79.818	ENSSSCG00000005906	CPSF1	100	79.322	Sus_scrofa
ENSPKIG00000002582	cpsf1	100	84.842	ENSTRUG00000013134	cpsf1	99	84.664	Takifugu_rubripes
ENSPKIG00000002582	cpsf1	100	86.077	ENSTNIG00000014027	cpsf1	100	85.783	Tetraodon_nigroviridis
ENSPKIG00000002582	cpsf1	72	86.283	ENSTBEG00000001756	CPSF1	87	86.283	Tupaia_belangeri
ENSPKIG00000002582	cpsf1	89	84.854	ENSTTRG00000001937	CPSF1	90	84.682	Tursiops_truncatus
ENSPKIG00000002582	cpsf1	100	81.184	ENSUAMG00000006476	CPSF1	97	81.241	Ursus_americanus
ENSPKIG00000002582	cpsf1	100	85.541	ENSXCOG00000003608	cpsf1	100	85.260	Xiphophorus_couchianus
ENSPKIG00000002582	cpsf1	100	84.429	ENSXMAG00000005798	cpsf1	100	84.243	Xiphophorus_maculatus