EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000002604 (Gene tree)
Gene ID: 111848176
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 6699 bases
Position: chrPGUA01000178.1:659700-666398
Accession: 111848176
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000016154	RRM_1	PF00076.22	1.5e-63	1	4
ENSPKIP00000016154	RRM_1	PF00076.22	1.5e-63	2	4
ENSPKIP00000016154	RRM_1	PF00076.22	1.5e-63	3	4
ENSPKIP00000016154	RRM_1	PF00076.22	1.5e-63	4	4
ENSPKIP00000016178	RRM_1	PF00076.22	2e-63	1	4
ENSPKIP00000016178	RRM_1	PF00076.22	2e-63	2	4
ENSPKIP00000016178	RRM_1	PF00076.22	2e-63	3	4
ENSPKIP00000016178	RRM_1	PF00076.22	2e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000040637	-	3529	-	ENSPKIP00000016154	703 (aa)	XP_023675747	UPI000CD60D27
ENSPKIT00000040661	-	3507	-	ENSPKIP00000016178	745 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000002604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000002604's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000002604	ncl	52	31.034	ENSPKIG00000005676	pabpc1b	58	33.140
ENSPKIG00000002604	ncl	52	30.348	ENSPKIG00000007322	pabpc1l	65	32.941

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000002604	ncl	72	37.618	ENSAPOG00000014534	-	67	42.494	Acanthochromis_polyacanthus
ENSPKIG00000002604	ncl	53	81.016	ENSAPOG00000023888	ncl	59	79.433	Acanthochromis_polyacanthus
ENSPKIG00000002604	ncl	72	74.194	ENSACIG00000013234	ncl	62	74.064	Amphilophus_citrinellus
ENSPKIG00000002604	ncl	53	81.016	ENSAOCG00000003133	ncl	60	78.353	Amphiprion_ocellaris
ENSPKIG00000002604	ncl	71	37.308	ENSAOCG00000014792	-	61	41.944	Amphiprion_ocellaris
ENSPKIG00000002604	ncl	71	37.500	ENSAPEG00000013612	-	61	42.199	Amphiprion_percula
ENSPKIG00000002604	ncl	53	81.016	ENSAPEG00000002769	ncl	59	78.538	Amphiprion_percula
ENSPKIG00000002604	ncl	65	76.509	ENSATEG00000013343	ncl	60	78.251	Anabas_testudineus
ENSPKIG00000002604	ncl	67	43.002	ENSATEG00000019862	-	80	46.803	Anabas_testudineus
ENSPKIG00000002604	ncl	66	57.882	ENSAPLG00000012897	-	63	61.478	Anas_platyrhynchos
ENSPKIG00000002604	ncl	53	61.818	ENSACAG00000001006	-	52	61.558	Anolis_carolinensis
ENSPKIG00000002604	ncl	52	71.475	ENSACLG00000026031	ncl	85	71.336	Astatotilapia_calliptera
ENSPKIG00000002604	ncl	67	69.744	ENSAMXG00000001647	ncl	81	73.510	Astyanax_mexicanus
ENSPKIG00000002604	ncl	51	41.880	ENSCHIG00000012665	-	54	41.927	Capra_hircus
ENSPKIG00000002604	ncl	53	63.089	ENSCPBG00000016444	-	56	63.089	Chrysemys_picta_bellii
ENSPKIG00000002604	ncl	55	76.724	ENSCSEG00000015089	ncl	64	74.588	Cynoglossus_semilaevis
ENSPKIG00000002604	ncl	52	74.394	ENSCVAG00000012600	ncl	61	73.460	Cyprinodon_variegatus
ENSPKIG00000002604	ncl	59	75.179	ENSDARG00000002710	ncl	83	78.387	Danio_rerio
ENSPKIG00000002604	ncl	52	44.355	ENSDNOG00000031611	-	67	43.733	Dasypus_novemcinctus
ENSPKIG00000002604	ncl	56	45.409	ENSDNOG00000040257	-	61	47.283	Dasypus_novemcinctus
ENSPKIG00000002604	ncl	78	43.234	ENSEBUG00000016173	ncl	55	46.172	Eptatretus_burgeri
ENSPKIG00000002604	ncl	71	70.495	ENSELUG00000006033	ncl	64	75.117	Esox_lucius
ENSPKIG00000002604	ncl	60	48.956	ENSELUG00000022826	-	81	52.128	Esox_lucius
ENSPKIG00000002604	ncl	70	73.529	ENSFHEG00000018000	ncl	79	72.104	Fundulus_heteroclitus
ENSPKIG00000002604	ncl	64	65.803	ENSGMOG00000001341	ncl	67	65.485	Gadus_morhua
ENSPKIG00000002604	ncl	53	60.367	ENSGALG00000032930	NCL	55	60.789	Gallus_gallus
ENSPKIG00000002604	ncl	73	74.599	ENSGAFG00000015375	ncl	67	72.038	Gambusia_affinis
ENSPKIG00000002604	ncl	78	64.566	ENSGACG00000008970	ncl	67	71.698	Gasterosteus_aculeatus
ENSPKIG00000002604	ncl	53	63.255	ENSGAGG00000013330	-	77	63.089	Gopherus_agassizii
ENSPKIG00000002604	ncl	53	73.190	ENSHBUG00000006869	ncl	78	71.059	Haplochromis_burtoni
ENSPKIG00000002604	ncl	53	77.688	ENSHCOG00000010234	ncl	60	75.234	Hippocampus_comes
ENSPKIG00000002604	ncl	52	74.026	ENSIPUG00000024556	ncl	80	74.277	Ictalurus_punctatus
ENSPKIG00000002604	ncl	59	75.656	ENSKMAG00000008111	ncl	60	75.772	Kryptolebias_marmoratus
ENSPKIG00000002604	ncl	57	44.019	ENSLBEG00000007915	-	66	44.615	Labrus_bergylta
ENSPKIG00000002604	ncl	51	43.799	ENSLBEG00000014278	-	82	44.142	Labrus_bergylta
ENSPKIG00000002604	ncl	59	78.520	ENSLBEG00000019073	ncl	62	78.622	Labrus_bergylta
ENSPKIG00000002604	ncl	58	52.300	ENSLACG00000022167	-	79	53.457	Latimeria_chalumnae
ENSPKIG00000002604	ncl	59	63.380	ENSLACG00000009328	ncl	62	62.736	Latimeria_chalumnae
ENSPKIG00000002604	ncl	66	68.344	ENSLOCG00000004828	ncl	57	71.462	Lepisosteus_oculatus
ENSPKIG00000002604	ncl	56	40.633	ENSMAMG00000003479	-	70	40.206	Mastacembelus_armatus
ENSPKIG00000002604	ncl	65	73.922	ENSMAMG00000002086	ncl	57	77.156	Mastacembelus_armatus
ENSPKIG00000002604	ncl	53	73.190	ENSMZEG00005017438	ncl	60	72.340	Maylandia_zebra
ENSPKIG00000002604	ncl	52	60.811	ENSMGAG00000008147	-	87	60.484	Meleagris_gallopavo
ENSPKIG00000002604	ncl	52	78.689	ENSMMOG00000008553	ncl	85	78.827	Mola_mola
ENSPKIG00000002604	ncl	52	57.031	ENSMODG00000002470	-	67	56.667	Monodelphis_domestica
ENSPKIG00000002604	ncl	85	61.526	ENSMALG00000014827	ncl	62	72.447	Monopterus_albus
ENSPKIG00000002604	ncl	52	72.792	ENSNBRG00000001232	ncl	82	72.632	Neolamprologus_brichardi
ENSPKIG00000002604	ncl	52	72.792	ENSNBRG00000000146	-	86	72.632	Neolamprologus_brichardi
ENSPKIG00000002604	ncl	52	57.560	ENSMEUG00000012335	-	55	57.180	Notamacropus_eugenii
ENSPKIG00000002604	ncl	53	73.190	ENSONIG00000012508	ncl	60	71.934	Oreochromis_niloticus
ENSPKIG00000002604	ncl	82	59.067	ENSOANG00000008732	-	61	59.536	Ornithorhynchus_anatinus
ENSPKIG00000002604	ncl	71	40.050	ENSORLG00000004645	-	83	40.722	Oryzias_latipes
ENSPKIG00000002604	ncl	51	79.109	ENSORLG00000007055	ncl	64	75.829	Oryzias_latipes
ENSPKIG00000002604	ncl	74	40.302	ENSORLG00020003497	-	75	40.979	Oryzias_latipes_hni
ENSPKIG00000002604	ncl	52	78.437	ENSORLG00020017943	ncl	57	75.829	Oryzias_latipes_hni
ENSPKIG00000002604	ncl	83	66.610	ENSORLG00015013815	ncl	87	80.195	Oryzias_latipes_hsok
ENSPKIG00000002604	ncl	54	40.302	ENSORLG00015006613	-	78	41.237	Oryzias_latipes_hsok
ENSPKIG00000002604	ncl	55	39.803	ENSOMEG00000015864	-	83	40.204	Oryzias_melastigma
ENSPKIG00000002604	ncl	53	77.688	ENSOMEG00000020786	ncl	57	74.764	Oryzias_melastigma
ENSPKIG00000002604	ncl	62	71.983	ENSPMGG00000004709	ncl	82	77.597	Periophthalmus_magnuspinnatus
ENSPKIG00000002604	ncl	64	40.340	ENSPMAG00000003855	ncl	57	38.073	Petromyzon_marinus
ENSPKIG00000002604	ncl	52	56.510	ENSPCIG00000003293	-	54	56.154	Phascolarctos_cinereus
ENSPKIG00000002604	ncl	50	74.599	ENSPFOG00000024205	ncl	64	73.759	Poecilia_formosa
ENSPKIG00000002604	ncl	62	70.626	ENSPLAG00000024026	ncl	57	72.749	Poecilia_latipinna
ENSPKIG00000002604	ncl	65	71.490	ENSPMEG00000006000	ncl	57	73.697	Poecilia_mexicana
ENSPKIG00000002604	ncl	53	73.190	ENSPNYG00000020494	ncl	60	72.577	Pundamilia_nyererei
ENSPKIG00000002604	ncl	59	72.275	ENSPNAG00000006192	ncl	71	72.834	Pygocentrus_nattereri
ENSPKIG00000002604	ncl	56	50.980	ENSSHAG00000002702	-	71	50.980	Sarcophilus_harrisii
ENSPKIG00000002604	ncl	64	78.146	ENSSFOG00015008583	ncl	67	82.679	Scleropages_formosus
ENSPKIG00000002604	ncl	50	46.467	ENSSFOG00015013153	-	76	50.325	Scleropages_formosus
ENSPKIG00000002604	ncl	62	75.000	ENSSMAG00000021241	ncl	65	72.527	Scophthalmus_maximus
ENSPKIG00000002604	ncl	54	44.444	ENSSMAG00000007582	-	61	44.882	Scophthalmus_maximus
ENSPKIG00000002604	ncl	68	75.325	ENSSDUG00000006128	ncl	87	80.423	Seriola_dumerili
ENSPKIG00000002604	ncl	69	42.438	ENSSDUG00000010922	-	70	44.675	Seriola_dumerili
ENSPKIG00000002604	ncl	59	42.725	ENSSLDG00000015784	-	65	44.125	Seriola_lalandi_dorsalis
ENSPKIG00000002604	ncl	65	74.730	ENSSLDG00000002012	ncl	65	76.484	Seriola_lalandi_dorsalis
ENSPKIG00000002604	ncl	53	79.181	ENSSPAG00000002637	ncl	82	79.522	Stegastes_partitus
ENSPKIG00000002604	ncl	54	44.246	ENSSPAG00000001859	-	62	43.832	Stegastes_partitus
ENSPKIG00000002604	ncl	53	59.269	ENSTGUG00000009782	-	60	59.791	Taeniopygia_guttata
ENSPKIG00000002604	ncl	59	73.050	ENSTRUG00000008185	ncl	63	73.176	Takifugu_rubripes
ENSPKIG00000002604	ncl	51	75.766	ENSTNIG00000012186	ncl	70	70.686	Tetraodon_nigroviridis
ENSPKIG00000002604	ncl	53	61.198	ENSXETG00000009517	ncl	75	61.458	Xenopus_tropicalis
ENSPKIG00000002604	ncl	54	48.810	ENSXCOG00000003524	ncl	85	60.695	Xiphophorus_couchianus
ENSPKIG00000002604	ncl	53	40.992	ENSXCOG00000007369	-	90	41.099	Xiphophorus_couchianus
ENSPKIG00000002604	ncl	53	76.471	ENSXMAG00000005914	ncl	58	74.353	Xiphophorus_maculatus