EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000003081 (Gene tree)
Gene ID: 111843115
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specificity factor subunit 6
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 7467 bases
Position: chrPGUA01000099.1:2055635-2063101
Accession: 111843115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000016973	RRM_1	PF00076.22	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000041477	-	2379	-	ENSPKIP00000016973	549 (aa)	XP_023666154	UPI000CD611D7

Gene Model

Click here to download ENSPKIG00000003081's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003081's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000003081	-	64	45.198	ENSPKIG00000018054	CPSF7	75	44.503

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003081	-	94	82.726	ENSG00000111605	CPSF6	95	82.375	Homo_sapiens
ENSPKIG00000003081	-	70	56.061	ENSG00000149532	CPSF7	100	52.318	Homo_sapiens
ENSPKIG00000003081	-	51	82.746	ENSAMEG00000011781	CPSF6	52	82.042	Ailuropoda_melanoleuca
ENSPKIG00000003081	-	57	40.667	ENSAOCG00000012357	CPSF7	57	51.724	Amphiprion_ocellaris
ENSPKIG00000003081	-	51	82.332	ENSACAG00000004381	CPSF6	52	81.979	Anolis_carolinensis
ENSPKIG00000003081	-	91	82.306	ENSANAG00000019240	CPSF6	93	81.944	Aotus_nancymaae
ENSPKIG00000003081	-	95	56.298	ENSAMXG00000016745	CPSF6	75	91.566	Astyanax_mexicanus
ENSPKIG00000003081	-	94	82.726	ENSBTAG00000007323	CPSF6	95	82.375	Bos_taurus
ENSPKIG00000003081	-	65	51.667	ENSBTAG00000015263	CPSF7	69	51.667	Bos_taurus
ENSPKIG00000003081	-	70	56.061	ENSCJAG00000019282	CPSF7	84	53.757	Callithrix_jacchus
ENSPKIG00000003081	-	94	82.726	ENSCJAG00000001798	CPSF6	95	82.375	Callithrix_jacchus
ENSPKIG00000003081	-	91	82.271	ENSCAFG00000000424	CPSF6	91	81.909	Canis_familiaris
ENSPKIG00000003081	-	94	82.726	ENSCAFG00020016950	CPSF6	95	82.375	Canis_lupus_dingo
ENSPKIG00000003081	-	65	51.667	ENSCHIG00000014655	CPSF7	69	51.667	Capra_hircus
ENSPKIG00000003081	-	94	82.726	ENSCHIG00000010792	CPSF6	95	82.375	Capra_hircus
ENSPKIG00000003081	-	91	82.236	ENSTSYG00000008591	CPSF6	91	81.873	Carlito_syrichta
ENSPKIG00000003081	-	94	82.534	ENSCPOG00000015201	CPSF6	95	82.184	Cavia_porcellus
ENSPKIG00000003081	-	65	51.667	ENSCCAG00000032367	CPSF7	69	51.667	Cebus_capucinus
ENSPKIG00000003081	-	94	82.726	ENSCCAG00000028149	CPSF6	95	82.375	Cebus_capucinus
ENSPKIG00000003081	-	68	51.042	ENSCATG00000042801	CPSF7	73	54.335	Cercocebus_atys
ENSPKIG00000003081	-	94	82.726	ENSCATG00000039288	CPSF6	95	82.375	Cercocebus_atys
ENSPKIG00000003081	-	91	82.036	ENSCLAG00000010149	CPSF6	94	81.673	Chinchilla_lanigera
ENSPKIG00000003081	-	57	57.746	ENSCLAG00000003174	CPSF7	71	54.335	Chinchilla_lanigera
ENSPKIG00000003081	-	68	51.042	ENSCSAG00000006414	CPSF7	73	54.335	Chlorocebus_sabaeus
ENSPKIG00000003081	-	94	82.342	ENSCPBG00000013322	CPSF6	95	82.184	Chrysemys_picta_bellii
ENSPKIG00000003081	-	91	82.236	ENSCANG00000037294	CPSF6	94	81.873	Colobus_angolensis_palliatus
ENSPKIG00000003081	-	93	79.884	ENSCGRG00001018082	Cpsf6	94	79.923	Cricetulus_griseus_chok1gshd
ENSPKIG00000003081	-	93	79.884	ENSCGRG00000016909	Cpsf6	94	81.511	Cricetulus_griseus_crigri
ENSPKIG00000003081	-	51	44.330	ENSCSEG00000001956	CPSF7	57	44.330	Cynoglossus_semilaevis
ENSPKIG00000003081	-	67	36.275	ENSCVAG00000007392	CPSF7	72	41.892	Cyprinodon_variegatus
ENSPKIG00000003081	-	52	83.803	ENSDARG00000018618	cpsf6	52	84.859	Danio_rerio
ENSPKIG00000003081	-	77	50.279	ENSDNOG00000018517	CPSF7	84	54.335	Dasypus_novemcinctus
ENSPKIG00000003081	-	51	83.039	ENSDNOG00000015292	CPSF6	51	82.332	Dasypus_novemcinctus
ENSPKIG00000003081	-	91	81.474	ENSDORG00000002950	Cpsf6	92	81.511	Dipodomys_ordii
ENSPKIG00000003081	-	69	84.332	ENSETEG00000002097	CPSF6	65	83.486	Echinops_telfairi
ENSPKIG00000003081	-	65	51.667	ENSETEG00000003765	CPSF7	71	54.070	Echinops_telfairi
ENSPKIG00000003081	-	94	82.726	ENSEASG00005008066	CPSF6	95	82.375	Equus_asinus_asinus
ENSPKIG00000003081	-	70	56.818	ENSECAG00000018521	CPSF7	86	54.335	Equus_caballus
ENSPKIG00000003081	-	94	82.726	ENSECAG00000015988	CPSF6	95	82.375	Equus_caballus
ENSPKIG00000003081	-	70	56.818	ENSFCAG00000013677	CPSF7	86	54.335	Felis_catus
ENSPKIG00000003081	-	94	82.726	ENSFCAG00000002855	CPSF6	95	82.375	Felis_catus
ENSPKIG00000003081	-	91	81.113	ENSFALG00000010157	CPSF6	94	81.349	Ficedula_albicollis
ENSPKIG00000003081	-	95	36.940	ENSFALG00000011927	CPSF7	76	54.913	Ficedula_albicollis
ENSPKIG00000003081	-	94	79.961	ENSFDAG00000002281	CPSF6	94	79.615	Fukomys_damarensis
ENSPKIG00000003081	-	52	79.000	ENSFHEG00000019693	cpsf6	53	78.859	Fundulus_heteroclitus
ENSPKIG00000003081	-	53	93.333	ENSGMOG00000012951	cpsf6	54	94.215	Gadus_morhua
ENSPKIG00000003081	-	62	53.631	ENSGALG00000040962	CPSF7	63	58.046	Gallus_gallus
ENSPKIG00000003081	-	94	82.342	ENSGAGG00000010228	CPSF6	95	82.184	Gopherus_agassizii
ENSPKIG00000003081	-	92	80.695	ENSGGOG00000008211	CPSF6	51	82.686	Gorilla_gorilla
ENSPKIG00000003081	-	94	82.534	ENSHGLG00000000792	CPSF6	95	82.184	Heterocephalus_glaber_female
ENSPKIG00000003081	-	60	57.746	ENSHGLG00000019090	-	73	54.913	Heterocephalus_glaber_female
ENSPKIG00000003081	-	94	79.808	ENSHGLG00100013861	CPSF6	94	81.673	Heterocephalus_glaber_male
ENSPKIG00000003081	-	52	76.573	ENSHCOG00000014555	cpsf6	51	78.246	Hippocampus_comes
ENSPKIG00000003081	-	91	82.236	ENSSTOG00000014133	CPSF6	94	81.873	Ictidomys_tridecemlineatus
ENSPKIG00000003081	-	68	51.562	ENSJJAG00000019390	Cpsf7	73	54.913	Jaculus_jaculus
ENSPKIG00000003081	-	91	81.312	ENSJJAG00000014647	Cpsf6	94	81.349	Jaculus_jaculus
ENSPKIG00000003081	-	51	81.979	ENSLACG00000008625	CPSF6	51	81.979	Latimeria_chalumnae
ENSPKIG00000003081	-	76	46.203	ENSLACG00000005542	CPSF7	70	46.203	Latimeria_chalumnae
ENSPKIG00000003081	-	66	89.759	ENSLOCG00000016190	cpsf6	66	90.964	Lepisosteus_oculatus
ENSPKIG00000003081	-	94	82.726	ENSLAFG00000030413	CPSF6	95	82.375	Loxodonta_africana
ENSPKIG00000003081	-	65	51.667	ENSMFAG00000001401	CPSF7	69	51.667	Macaca_fascicularis
ENSPKIG00000003081	-	94	82.726	ENSMFAG00000045318	CPSF6	95	82.375	Macaca_fascicularis
ENSPKIG00000003081	-	81	87.940	ENSMMUG00000002921	CPSF6	51	82.686	Macaca_mulatta
ENSPKIG00000003081	-	68	51.042	ENSMMUG00000015280	CPSF7	73	54.335	Macaca_mulatta
ENSPKIG00000003081	-	68	51.042	ENSMNEG00000029585	CPSF7	73	54.335	Macaca_nemestrina
ENSPKIG00000003081	-	94	82.726	ENSMNEG00000036311	CPSF6	95	82.375	Macaca_nemestrina
ENSPKIG00000003081	-	65	51.667	ENSMLEG00000031269	CPSF7	66	51.667	Mandrillus_leucophaeus
ENSPKIG00000003081	-	91	82.236	ENSMLEG00000003957	CPSF6	94	81.873	Mandrillus_leucophaeus
ENSPKIG00000003081	-	95	43.920	ENSMGAG00000004876	CPSF7	62	58.683	Meleagris_gallopavo
ENSPKIG00000003081	-	94	82.726	ENSMAUG00000013240	Cpsf6	95	82.375	Mesocricetus_auratus
ENSPKIG00000003081	-	92	82.171	ENSMICG00000007385	-	51	82.686	Microcebus_murinus
ENSPKIG00000003081	-	51	83.392	ENSMOCG00000013982	Cpsf6	51	82.686	Microtus_ochrogaster
ENSPKIG00000003081	-	94	82.342	ENSMODG00000007123	CPSF6	95	81.992	Monodelphis_domestica
ENSPKIG00000003081	-	74	91.192	ENSMALG00000014908	cpsf6	77	91.813	Monopterus_albus
ENSPKIG00000003081	-	94	82.726	MGP_CAROLIEiJ_G0015834	Cpsf6	95	82.375	Mus_caroli
ENSPKIG00000003081	-	94	82.726	ENSMUSG00000055531	Cpsf6	95	82.375	Mus_musculus
ENSPKIG00000003081	-	51	83.392	MGP_PahariEiJ_G0031253	Cpsf6	56	82.686	Mus_pahari
ENSPKIG00000003081	-	94	82.726	MGP_SPRETEiJ_G0016657	Cpsf6	95	82.375	Mus_spretus
ENSPKIG00000003081	-	66	89.130	ENSMLUG00000028728	-	88	84.828	Myotis_lucifugus
ENSPKIG00000003081	-	68	51.562	ENSMLUG00000013278	CPSF7	73	54.913	Myotis_lucifugus
ENSPKIG00000003081	-	51	79.286	ENSMLUG00000004172	-	52	78.571	Myotis_lucifugus
ENSPKIG00000003081	-	51	83.392	ENSNGAG00000015901	Cpsf6	51	82.686	Nannospalax_galili
ENSPKIG00000003081	-	94	82.726	ENSNLEG00000003798	CPSF6	95	82.375	Nomascus_leucogenys
ENSPKIG00000003081	-	65	51.667	ENSNLEG00000002529	CPSF7	63	51.667	Nomascus_leucogenys
ENSPKIG00000003081	-	79	68.212	ENSODEG00000007109	-	73	67.296	Octodon_degus
ENSPKIG00000003081	-	51	82.686	ENSODEG00000018399	-	51	81.979	Octodon_degus
ENSPKIG00000003081	-	91	68.452	ENSOANG00000005944	CPSF6	50	76.981	Ornithorhynchus_anatinus
ENSPKIG00000003081	-	95	42.647	ENSOCUG00000024726	CPSF7	71	54.335	Oryctolagus_cuniculus
ENSPKIG00000003081	-	94	84.895	ENSORLG00000013893	cpsf6	95	82.634	Oryzias_latipes
ENSPKIG00000003081	-	94	84.895	ENSORLG00020016593	cpsf6	95	82.634	Oryzias_latipes_hni
ENSPKIG00000003081	-	94	84.895	ENSORLG00015015558	cpsf6	95	82.634	Oryzias_latipes_hsok
ENSPKIG00000003081	-	94	83.206	ENSOMEG00000009425	cpsf6	95	81.905	Oryzias_melastigma
ENSPKIG00000003081	-	95	42.153	ENSOARG00000012937	CPSF7	65	54.335	Ovis_aries
ENSPKIG00000003081	-	65	51.667	ENSPPAG00000028232	CPSF7	66	51.667	Pan_paniscus
ENSPKIG00000003081	-	94	82.726	ENSPPRG00000021620	CPSF6	95	82.375	Panthera_pardus
ENSPKIG00000003081	-	65	51.667	ENSPPRG00000008538	CPSF7	71	54.913	Panthera_pardus
ENSPKIG00000003081	-	85	82.090	ENSPTIG00000004079	CPSF6	94	81.702	Panthera_tigris_altaica
ENSPKIG00000003081	-	92	80.695	ENSPTRG00000005205	CPSF6	51	82.686	Pan_troglodytes
ENSPKIG00000003081	-	65	51.667	ENSPTRG00000003742	CPSF7	69	51.667	Pan_troglodytes
ENSPKIG00000003081	-	65	51.667	ENSPANG00000006037	CPSF7	67	47.904	Papio_anubis
ENSPKIG00000003081	-	94	82.726	ENSPANG00000011641	CPSF6	95	82.375	Papio_anubis
ENSPKIG00000003081	-	68	51.562	ENSPEMG00000012648	Cpsf7	73	54.913	Peromyscus_maniculatus_bairdii
ENSPKIG00000003081	-	91	81.275	ENSPEMG00000007973	Cpsf6	94	81.312	Peromyscus_maniculatus_bairdii
ENSPKIG00000003081	-	65	50.556	ENSPCIG00000002551	CPSF7	84	52.222	Phascolarctos_cinereus
ENSPKIG00000003081	-	94	82.342	ENSPCIG00000019063	CPSF6	95	81.992	Phascolarctos_cinereus
ENSPKIG00000003081	-	62	87.931	ENSPLAG00000005715	cpsf6	52	84.211	Poecilia_latipinna
ENSPKIG00000003081	-	52	82.578	ENSPMEG00000001353	cpsf6	52	84.211	Poecilia_mexicana
ENSPKIG00000003081	-	52	82.578	ENSPREG00000004417	cpsf6	52	84.211	Poecilia_reticulata
ENSPKIG00000003081	-	65	51.667	ENSPPYG00000003188	CPSF7	69	51.667	Pongo_abelii
ENSPKIG00000003081	-	94	82.726	ENSPPYG00000004756	CPSF6	95	82.375	Pongo_abelii
ENSPKIG00000003081	-	91	80.620	ENSPCOG00000024384	CPSF6	51	82.686	Propithecus_coquereli
ENSPKIG00000003081	-	52	85.915	ENSPNAG00000024098	CPSF6	52	83.451	Pygocentrus_nattereri
ENSPKIG00000003081	-	59	45.098	ENSPNAG00000015073	CPSF7	74	44.318	Pygocentrus_nattereri
ENSPKIG00000003081	-	94	82.917	ENSRNOG00000005927	Cpsf6	95	82.567	Rattus_norvegicus
ENSPKIG00000003081	-	68	51.562	ENSRNOG00000020668	Cpsf7	73	54.913	Rattus_norvegicus
ENSPKIG00000003081	-	70	56.061	ENSRBIG00000031429	CPSF7	86	53.757	Rhinopithecus_bieti
ENSPKIG00000003081	-	92	80.695	ENSRBIG00000042827	CPSF6	51	82.686	Rhinopithecus_bieti
ENSPKIG00000003081	-	65	51.667	ENSRROG00000045009	CPSF7	69	51.667	Rhinopithecus_roxellana
ENSPKIG00000003081	-	94	82.726	ENSRROG00000042758	CPSF6	95	82.375	Rhinopithecus_roxellana
ENSPKIG00000003081	-	89	80.695	ENSSBOG00000010652	CPSF6	94	81.702	Saimiri_boliviensis_boliviensis
ENSPKIG00000003081	-	65	51.667	ENSSBOG00000018431	CPSF7	69	51.667	Saimiri_boliviensis_boliviensis
ENSPKIG00000003081	-	73	41.808	ENSSFOG00015010288	cpsf7	69	43.750	Scleropages_formosus
ENSPKIG00000003081	-	95	87.115	ENSSFOG00015015803	CPSF6	94	86.538	Scleropages_formosus
ENSPKIG00000003081	-	85	89.328	ENSSARG00000006743	CPSF6	80	87.402	Sorex_araneus
ENSPKIG00000003081	-	70	56.818	ENSSSCG00000013083	CPSF7	84	54.335	Sus_scrofa
ENSPKIG00000003081	-	94	82.726	ENSSSCG00000038031	CPSF6	95	82.375	Sus_scrofa
ENSPKIG00000003081	-	62	49.444	ENSTGUG00000006513	CPSF7	74	54.839	Taeniopygia_guttata
ENSPKIG00000003081	-	61	51.042	ENSTTRG00000011085	CPSF7	70	54.913	Tursiops_truncatus
ENSPKIG00000003081	-	85	82.090	ENSUAMG00000023492	CPSF6	94	81.702	Ursus_americanus
ENSPKIG00000003081	-	85	82.090	ENSUMAG00000020779	CPSF6	94	81.702	Ursus_maritimus
ENSPKIG00000003081	-	68	51.562	ENSUMAG00000011825	CPSF7	73	54.913	Ursus_maritimus
ENSPKIG00000003081	-	70	56.818	ENSVVUG00000004939	CPSF7	84	54.335	Vulpes_vulpes
ENSPKIG00000003081	-	97	42.364	ENSXETG00000006715	cpsf7	54	49.153	Xenopus_tropicalis
ENSPKIG00000003081	-	52	82.578	ENSXCOG00000013423	cpsf6	52	84.211	Xiphophorus_couchianus