EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000003136 (Gene tree)
Gene ID: 111855036
Gene Symbol: snrpc
Alias: -
Full Name: U1 small nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 4271 bases
Position: chrPGUA01000286.1:195675-199945
Accession: 111855036
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000017071	zf-U1	PF06220.12	1.6e-22	1	1
ENSPKIP00000017086	zf-U1	PF06220.12	1.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000041592	-	793	-	ENSPKIP00000017086	164 (aa)	XP_023689402	UPI000CD64B25
ENSPKIT00000041577	-	530	-	ENSPKIP00000017071	155 (aa)	XP_023689399	UPI000CD64C75

Gene Model

Click here to download ENSPKIG00000003136's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003136's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000003136	snrpc	100	81.290	ENSPKIG00000001671	SNRPC	59	86.170

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003136	snrpc	50	90.909	ENSACAG00000015721	SNRPC	51	84.783	Anolis_carolinensis
ENSPKIG00000003136	snrpc	100	85.256	ENSANAG00000019157	-	66	82.857	Aotus_nancymaae
ENSPKIG00000003136	snrpc	98	63.816	ENSANAG00000021444	-	60	70.213	Aotus_nancymaae
ENSPKIG00000003136	snrpc	99	79.221	ENSANAG00000020588	-	54	80.645	Aotus_nancymaae
ENSPKIG00000003136	snrpc	100	77.419	ENSANAG00000019726	-	58	87.234	Aotus_nancymaae
ENSPKIG00000003136	snrpc	100	73.548	ENSANAG00000021026	-	61	71.277	Aotus_nancymaae
ENSPKIG00000003136	snrpc	100	72.903	ENSANAG00000007843	-	59	87.234	Aotus_nancymaae
ENSPKIG00000003136	snrpc	100	87.742	ENSAMXG00000032641	snrpc	52	92.553	Astyanax_mexicanus
ENSPKIG00000003136	snrpc	100	72.903	ENSCJAG00000043055	-	59	87.234	Callithrix_jacchus
ENSPKIG00000003136	snrpc	50	92.308	ENSCAFG00000001231	-	74	87.234	Canis_familiaris
ENSPKIG00000003136	snrpc	61	85.263	ENSCAFG00000031775	-	59	85.106	Canis_familiaris
ENSPKIG00000003136	snrpc	61	85.263	ENSCAFG00020017383	-	59	85.106	Canis_lupus_dingo
ENSPKIG00000003136	snrpc	97	77.483	ENSCAFG00020009944	-	53	78.261	Canis_lupus_dingo
ENSPKIG00000003136	snrpc	100	80.645	ENSTSYG00000029745	-	53	83.810	Carlito_syrichta
ENSPKIG00000003136	snrpc	100	70.968	ENSTSYG00000025721	-	57	62.766	Carlito_syrichta
ENSPKIG00000003136	snrpc	57	85.227	ENSCAPG00000005161	SNRPC	62	85.227	Cavia_aperea
ENSPKIG00000003136	snrpc	100	81.290	ENSCCAG00000036059	-	53	84.043	Cebus_capucinus
ENSPKIG00000003136	snrpc	98	78.289	ENSCCAG00000022751	-	55	79.121	Cebus_capucinus
ENSPKIG00000003136	snrpc	100	62.581	ENSCCAG00000028293	-	71	78.261	Cebus_capucinus
ENSPKIG00000003136	snrpc	91	65.190	ENSCLAG00000010242	-	57	74.194	Chinchilla_lanigera
ENSPKIG00000003136	snrpc	61	67.368	ENSCHOG00000011439	SNRPC	51	68.478	Choloepus_hoffmanni
ENSPKIG00000003136	snrpc	65	59.406	ENSCING00000021229	ci-zf(matrin)-4	51	85.484	Ciona_intestinalis
ENSPKIG00000003136	snrpc	89	84.783	ENSCANG00000028035	SNRPC	59	87.234	Colobus_angolensis_palliatus
ENSPKIG00000003136	snrpc	50	69.231	ENSCGRG00001021483	-	55	62.766	Cricetulus_griseus_chok1gshd
ENSPKIG00000003136	snrpc	100	89.032	ENSDARG00000009871	snrpc	59	92.553	Danio_rerio
ENSPKIG00000003136	snrpc	52	92.593	ENSDNOG00000042403	-	75	87.234	Dasypus_novemcinctus
ENSPKIG00000003136	snrpc	50	89.744	ENSDORG00000029823	-	74	75.490	Dipodomys_ordii
ENSPKIG00000003136	snrpc	50	89.744	ENSETEG00000008268	-	60	82.979	Echinops_telfairi
ENSPKIG00000003136	snrpc	52	87.654	ENSETEG00000008756	-	61	93.548	Echinops_telfairi
ENSPKIG00000003136	snrpc	100	69.032	ENSETEG00000011265	-	60	79.787	Echinops_telfairi
ENSPKIG00000003136	snrpc	100	57.051	ENSEBUG00000011445	snrpc	53	56.989	Eptatretus_burgeri
ENSPKIG00000003136	snrpc	61	64.894	ENSEEUG00000014633	SNRPC	53	64.516	Erinaceus_europaeus
ENSPKIG00000003136	snrpc	100	85.161	ENSELUG00000000815	SNRPC	60	95.745	Esox_lucius
ENSPKIG00000003136	snrpc	100	83.019	ENSELUG00000020489	snrpc	59	95.745	Esox_lucius
ENSPKIG00000003136	snrpc	50	91.026	ENSFCAG00000031775	-	55	86.170	Felis_catus
ENSPKIG00000003136	snrpc	77	87.395	ENSFHEG00000016667	snrpc	97	87.395	Fundulus_heteroclitus
ENSPKIG00000003136	snrpc	50	92.308	ENSGALG00000002773	SNRPC	59	84.211	Gallus_gallus
ENSPKIG00000003136	snrpc	83	66.667	ENSHGLG00000005871	-	66	76.596	Heterocephalus_glaber_female
ENSPKIG00000003136	snrpc	100	83.226	ENSHGLG00100017764	-	59	87.234	Heterocephalus_glaber_male
ENSPKIG00000003136	snrpc	100	85.161	ENSIPUG00000024851	snrpc	59	90.426	Ictalurus_punctatus
ENSPKIG00000003136	snrpc	89	84.783	ENSMFAG00000031764	-	59	87.234	Macaca_fascicularis
ENSPKIG00000003136	snrpc	100	72.258	ENSMMUG00000039415	-	63	86.170	Macaca_mulatta
ENSPKIG00000003136	snrpc	50	92.308	ENSMMUG00000000869	-	61	87.234	Macaca_mulatta
ENSPKIG00000003136	snrpc	100	76.774	ENSMMUG00000045425	-	59	77.660	Macaca_mulatta
ENSPKIG00000003136	snrpc	97	78.808	ENSMLEG00000040224	-	52	82.222	Mandrillus_leucophaeus
ENSPKIG00000003136	snrpc	100	72.903	ENSMICG00000032183	-	59	87.234	Microcebus_murinus
ENSPKIG00000003136	snrpc	50	92.308	ENSMICG00000009130	-	65	86.022	Microcebus_murinus
ENSPKIG00000003136	snrpc	100	69.677	ENSMICG00000036552	-	53	81.319	Microcebus_murinus
ENSPKIG00000003136	snrpc	100	63.226	ENSMODG00000025263	-	69	77.895	Monodelphis_domestica
ENSPKIG00000003136	snrpc	50	93.590	ENSMODG00000013904	-	59	87.234	Monodelphis_domestica
ENSPKIG00000003136	snrpc	100	69.231	ENSMALG00000001197	snrpc	57	85.106	Monopterus_albus
ENSPKIG00000003136	snrpc	89	84.783	ENSMUSG00000024217	Snrpc	59	87.234	Mus_musculus
ENSPKIG00000003136	snrpc	50	88.462	ENSMPUG00000003210	SNRPC	58	85.870	Mustela_putorius_furo
ENSPKIG00000003136	snrpc	50	88.462	ENSMLUG00000002488	SNRPC	58	85.870	Myotis_lucifugus
ENSPKIG00000003136	snrpc	57	85.227	ENSMEUG00000009300	SNRPC	62	85.227	Notamacropus_eugenii
ENSPKIG00000003136	snrpc	63	80.412	ENSODEG00000006008	-	68	81.915	Octodon_degus
ENSPKIG00000003136	snrpc	50	91.026	ENSODEG00000020201	-	59	86.170	Octodon_degus
ENSPKIG00000003136	snrpc	57	81.522	ENSOANG00000003405	SNRPC	64	79.787	Ornithorhynchus_anatinus
ENSPKIG00000003136	snrpc	50	92.308	ENSOCUG00000026430	-	58	86.170	Oryctolagus_cuniculus
ENSPKIG00000003136	snrpc	61	86.316	ENSOCUG00000023292	-	59	86.170	Oryctolagus_cuniculus
ENSPKIG00000003136	snrpc	76	88.136	ENSOMEG00000012014	snrpc	67	88.136	Oryzias_melastigma
ENSPKIG00000003136	snrpc	50	75.325	ENSOGAG00000028405	-	60	71.277	Otolemur_garnettii
ENSPKIG00000003136	snrpc	61	85.263	ENSOGAG00000026269	-	59	85.106	Otolemur_garnettii
ENSPKIG00000003136	snrpc	98	47.712	ENSPPRG00000016017	-	62	45.714	Panthera_pardus
ENSPKIG00000003136	snrpc	74	63.115	ENSPTIG00000013329	-	61	71.277	Panthera_tigris_altaica
ENSPKIG00000003136	snrpc	100	75.484	ENSPANG00000018228	-	55	76.596	Papio_anubis
ENSPKIG00000003136	snrpc	99	69.935	ENSPMGG00000022162	snrpc	56	84.615	Periophthalmus_magnuspinnatus
ENSPKIG00000003136	snrpc	100	76.129	ENSPEMG00000002763	-	61	86.022	Peromyscus_maniculatus_bairdii
ENSPKIG00000003136	snrpc	86	70.149	ENSPMAG00000000602	snrpc	60	72.340	Petromyzon_marinus
ENSPKIG00000003136	snrpc	52	92.593	ENSPPYG00000029902	-	85	86.905	Pongo_abelii
ENSPKIG00000003136	snrpc	50	88.462	ENSPCOG00000004904	SNRPC	59	87.234	Propithecus_coquereli
ENSPKIG00000003136	snrpc	50	87.179	ENSPVAG00000015597	SNRPC	51	84.783	Pteropus_vampyrus
ENSPKIG00000003136	snrpc	86	67.910	ENSPNYG00000004900	snrpc	59	65.957	Pundamilia_nyererei
ENSPKIG00000003136	snrpc	100	86.452	ENSPNAG00000012799	snrpc	59	92.553	Pygocentrus_nattereri
ENSPKIG00000003136	snrpc	50	92.308	ENSRBIG00000022998	-	59	87.234	Rhinopithecus_bieti
ENSPKIG00000003136	snrpc	98	65.789	ENSSBOG00000032882	-	60	78.889	Saimiri_boliviensis_boliviensis
ENSPKIG00000003136	snrpc	98	70.395	ENSSBOG00000032361	-	64	71.429	Saimiri_boliviensis_boliviensis
ENSPKIG00000003136	snrpc	100	72.903	ENSSBOG00000023189	-	57	77.660	Saimiri_boliviensis_boliviensis
ENSPKIG00000003136	snrpc	100	63.226	ENSSHAG00000002972	-	69	77.895	Sarcophilus_harrisii
ENSPKIG00000003136	snrpc	59	94.565	ENSSFOG00015022422	snrpc	60	94.681	Scleropages_formosus
ENSPKIG00000003136	snrpc	61	87.234	ENSSFOG00015019150	snrpc	59	87.234	Scleropages_formosus
ENSPKIG00000003136	snrpc	100	70.323	ENSTRUG00000021651	snrpc	57	85.106	Takifugu_rubripes
ENSPKIG00000003136	snrpc	100	78.344	ENSTNIG00000018307	snrpc	60	84.375	Tetraodon_nigroviridis
ENSPKIG00000003136	snrpc	61	80.000	ENSTBEG00000015356	-	67	79.787	Tupaia_belangeri
ENSPKIG00000003136	snrpc	100	80.645	ENSTBEG00000013022	-	60	81.915	Tupaia_belangeri
ENSPKIG00000003136	snrpc	50	92.308	ENSUAMG00000014125	SNRPC	64	87.234	Ursus_americanus
ENSPKIG00000003136	snrpc	97	81.333	ENSVVUG00000010467	-	51	83.516	Vulpes_vulpes
ENSPKIG00000003136	snrpc	83	71.318	ENSXETG00000024721	snrpc	59	84.043	Xenopus_tropicalis
ENSPKIG00000003136	snrpc	52	68.293	ENSXCOG00000015871	-	57	82.418	Xiphophorus_couchianus