EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000003504 (Gene tree)
Gene ID: 111836487
Gene Symbol: apex1
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 8744 bases
Position: chrPGUA01000565.1:1943-10686
Accession: 111836487
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000017701	Exo_endo_phos	PF03372.23	2.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000042217	-	2362	-	ENSPKIP00000017701	314 (aa)	XP_023653570	UPI000CD63563

Gene Model

Click here to download ENSPKIG00000003504's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003504's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003504	apex1	100	64.486	ENSG00000100823	APEX1	99	57.310	Homo_sapiens
ENSPKIG00000003504	apex1	99	81.731	ENSAPOG00000017002	apex1	90	85.145	Acanthochromis_polyacanthus
ENSPKIG00000003504	apex1	100	63.863	ENSAMEG00000005418	APEX1	87	68.478	Ailuropoda_melanoleuca
ENSPKIG00000003504	apex1	88	86.282	ENSACIG00000010653	apex1	93	86.232	Amphilophus_citrinellus
ENSPKIG00000003504	apex1	99	82.692	ENSAOCG00000009649	apex1	89	85.870	Amphiprion_ocellaris
ENSPKIG00000003504	apex1	99	83.013	ENSAPEG00000021453	apex1	89	86.232	Amphiprion_percula
ENSPKIG00000003504	apex1	99	81.994	ENSATEG00000002883	apex1	87	87.273	Anabas_testudineus
ENSPKIG00000003504	apex1	100	67.683	ENSACAG00000008099	APEX1	87	74.638	Anolis_carolinensis
ENSPKIG00000003504	apex1	100	64.486	ENSANAG00000030117	APEX1	87	68.953	Aotus_nancymaae
ENSPKIG00000003504	apex1	88	87.273	ENSACLG00000018441	apex1	89	87.319	Astatotilapia_calliptera
ENSPKIG00000003504	apex1	100	85.032	ENSAMXG00000034699	apex1	88	87.681	Astyanax_mexicanus
ENSPKIG00000003504	apex1	100	63.522	ENSBTAG00000002745	APEX1	87	68.116	Bos_taurus
ENSPKIG00000003504	apex1	83	45.594	WBGene00001372	exo-3	92	45.113	Caenorhabditis_elegans
ENSPKIG00000003504	apex1	100	64.798	ENSCJAG00000009726	APEX1	87	69.314	Callithrix_jacchus
ENSPKIG00000003504	apex1	100	66.149	ENSCAFG00000032033	APEX1	87	69.675	Canis_familiaris
ENSPKIG00000003504	apex1	54	60.795	ENSCAFG00020023002	-	73	66.412	Canis_lupus_dingo
ENSPKIG00000003504	apex1	100	66.149	ENSCAFG00020014377	-	87	69.675	Canis_lupus_dingo
ENSPKIG00000003504	apex1	88	53.957	ENSCHIG00000014537	-	86	54.982	Capra_hircus
ENSPKIG00000003504	apex1	100	63.522	ENSCHIG00000007298	-	87	68.116	Capra_hircus
ENSPKIG00000003504	apex1	100	64.286	ENSTSYG00000034813	APEX1	87	68.231	Carlito_syrichta
ENSPKIG00000003504	apex1	82	64.479	ENSCAPG00000016235	APEX1	91	68.220	Cavia_aperea
ENSPKIG00000003504	apex1	100	64.396	ENSCPOG00000030909	APEX1	87	68.953	Cavia_porcellus
ENSPKIG00000003504	apex1	100	64.798	ENSCCAG00000033056	-	87	69.314	Cebus_capucinus
ENSPKIG00000003504	apex1	100	55.763	ENSCCAG00000031931	-	87	59.206	Cebus_capucinus
ENSPKIG00000003504	apex1	100	64.486	ENSCATG00000015580	APEX1	87	68.231	Cercocebus_atys
ENSPKIG00000003504	apex1	100	63.975	ENSCLAG00000001002	APEX1	87	68.231	Chinchilla_lanigera
ENSPKIG00000003504	apex1	100	64.798	ENSCSAG00000016670	-	87	68.592	Chlorocebus_sabaeus
ENSPKIG00000003504	apex1	100	64.798	ENSCSAG00000016685	-	87	68.592	Chlorocebus_sabaeus
ENSPKIG00000003504	apex1	100	68.847	ENSCPBG00000009567	APEX1	87	73.913	Chrysemys_picta_bellii
ENSPKIG00000003504	apex1	85	62.547	ENSCING00000008137	-	85	62.547	Ciona_intestinalis
ENSPKIG00000003504	apex1	99	47.937	ENSCSAVG00000007144	-	100	53.876	Ciona_savignyi
ENSPKIG00000003504	apex1	100	64.798	ENSCANG00000030726	APEX1	87	68.592	Colobus_angolensis_palliatus
ENSPKIG00000003504	apex1	100	63.272	ENSCGRG00001017046	Apex1	87	67.148	Cricetulus_griseus_chok1gshd
ENSPKIG00000003504	apex1	100	63.272	ENSCGRG00000008984	Apex1	87	67.148	Cricetulus_griseus_crigri
ENSPKIG00000003504	apex1	99	79.167	ENSCSEG00000017499	apex1	89	82.609	Cynoglossus_semilaevis
ENSPKIG00000003504	apex1	99	84.615	ENSCVAG00000022075	apex1	89	87.681	Cyprinodon_variegatus
ENSPKIG00000003504	apex1	100	85.032	ENSDARG00000045843	apex1	89	88.406	Danio_rerio
ENSPKIG00000003504	apex1	100	60.748	ENSDNOG00000042234	APEX1	82	65.580	Dasypus_novemcinctus
ENSPKIG00000003504	apex1	100	64.907	ENSDORG00000001616	Apex1	87	69.314	Dipodomys_ordii
ENSPKIG00000003504	apex1	100	64.174	ENSETEG00000004855	-	87	68.592	Echinops_telfairi
ENSPKIG00000003504	apex1	75	61.765	ENSEBUG00000000622	-	92	61.765	Eptatretus_burgeri
ENSPKIG00000003504	apex1	100	65.109	ENSEASG00005017489	APEX1	64	68.953	Equus_asinus_asinus
ENSPKIG00000003504	apex1	100	65.109	ENSECAG00000022325	APEX1	71	68.953	Equus_caballus
ENSPKIG00000003504	apex1	87	67.273	ENSEEUG00000012569	APEX1	93	68.165	Erinaceus_europaeus
ENSPKIG00000003504	apex1	100	85.669	ENSELUG00000021706	apex1	94	87.075	Esox_lucius
ENSPKIG00000003504	apex1	100	64.907	ENSFCAG00000030869	APEX1	87	68.953	Felis_catus
ENSPKIG00000003504	apex1	100	64.596	ENSFDAG00000006120	APEX1	87	68.953	Fukomys_damarensis
ENSPKIG00000003504	apex1	99	84.936	ENSFHEG00000009031	apex1	74	88.043	Fundulus_heteroclitus
ENSPKIG00000003504	apex1	99	78.526	ENSGMOG00000007943	apex1	89	80.797	Gadus_morhua
ENSPKIG00000003504	apex1	99	84.615	ENSGAFG00000005311	apex1	89	88.406	Gambusia_affinis
ENSPKIG00000003504	apex1	99	83.013	ENSGACG00000019497	apex1	99	84.962	Gasterosteus_aculeatus
ENSPKIG00000003504	apex1	100	69.182	ENSGAGG00000014999	APEX1	87	73.913	Gopherus_agassizii
ENSPKIG00000003504	apex1	100	64.174	ENSGGOG00000002128	APEX1	87	68.231	Gorilla_gorilla
ENSPKIG00000003504	apex1	99	81.410	ENSHBUG00000005894	apex1	89	87.319	Haplochromis_burtoni
ENSPKIG00000003504	apex1	100	65.109	ENSHGLG00000002848	APEX1	87	69.314	Heterocephalus_glaber_female
ENSPKIG00000003504	apex1	100	65.109	ENSHGLG00100017878	APEX1	87	69.314	Heterocephalus_glaber_male
ENSPKIG00000003504	apex1	99	84.615	ENSHCOG00000009961	apex1	89	88.043	Hippocampus_comes
ENSPKIG00000003504	apex1	100	83.439	ENSIPUG00000005799	apex1	89	86.957	Ictalurus_punctatus
ENSPKIG00000003504	apex1	100	64.798	ENSSTOG00000010096	APEX1	87	68.953	Ictidomys_tridecemlineatus
ENSPKIG00000003504	apex1	90	59.649	ENSJJAG00000020465	-	89	60.289	Jaculus_jaculus
ENSPKIG00000003504	apex1	100	63.551	ENSJJAG00000012067	-	87	68.231	Jaculus_jaculus
ENSPKIG00000003504	apex1	100	56.698	ENSJJAG00000003660	-	87	59.928	Jaculus_jaculus
ENSPKIG00000003504	apex1	99	83.013	ENSKMAG00000021171	apex1	89	85.507	Kryptolebias_marmoratus
ENSPKIG00000003504	apex1	99	83.654	ENSLBEG00000010248	apex1	95	85.034	Labrus_bergylta
ENSPKIG00000003504	apex1	100	74.684	ENSLACG00000008617	APEX1	87	79.562	Latimeria_chalumnae
ENSPKIG00000003504	apex1	100	80.442	ENSLOCG00000015516	apex1	87	82.971	Lepisosteus_oculatus
ENSPKIG00000003504	apex1	90	68.662	ENSLAFG00000021872	APEX1	87	69.314	Loxodonta_africana
ENSPKIG00000003504	apex1	100	64.486	ENSMFAG00000002565	APEX1	87	68.231	Macaca_fascicularis
ENSPKIG00000003504	apex1	100	64.486	ENSMMUG00000048039	APEX1	87	68.231	Macaca_mulatta
ENSPKIG00000003504	apex1	100	64.907	ENSMNEG00000036944	APEX1	87	68.231	Macaca_nemestrina
ENSPKIG00000003504	apex1	100	64.486	ENSMLEG00000042125	APEX1	87	68.231	Mandrillus_leucophaeus
ENSPKIG00000003504	apex1	99	83.654	ENSMAMG00000023526	apex1	89	85.507	Mastacembelus_armatus
ENSPKIG00000003504	apex1	88	87.273	ENSMZEG00005014187	apex1	89	87.319	Maylandia_zebra
ENSPKIG00000003504	apex1	100	63.240	ENSMAUG00000013994	Apex1	88	66.787	Mesocricetus_auratus
ENSPKIG00000003504	apex1	100	63.863	ENSMICG00000043554	APEX1	87	68.231	Microcebus_murinus
ENSPKIG00000003504	apex1	100	63.354	ENSMOCG00000013721	Apex1	87	67.870	Microtus_ochrogaster
ENSPKIG00000003504	apex1	99	82.428	ENSMMOG00000010031	apex1	87	84.477	Mola_mola
ENSPKIG00000003504	apex1	89	68.459	ENSMODG00000007125	APEX1	86	69.091	Monodelphis_domestica
ENSPKIG00000003504	apex1	89	80.357	ENSMALG00000011699	apex1	74	80.072	Monopterus_albus
ENSPKIG00000003504	apex1	99	65.015	MGP_CAROLIEiJ_G0019209	Apex1	87	68.841	Mus_caroli
ENSPKIG00000003504	apex1	100	64.815	ENSMUSG00000035960	Apex1	87	68.592	Mus_musculus
ENSPKIG00000003504	apex1	100	63.354	MGP_PahariEiJ_G0030232	Apex1	87	68.592	Mus_pahari
ENSPKIG00000003504	apex1	100	64.815	MGP_SPRETEiJ_G0020101	Apex1	87	68.592	Mus_spretus
ENSPKIG00000003504	apex1	100	63.158	ENSMLUG00000028957	APEX1	86	67.754	Myotis_lucifugus
ENSPKIG00000003504	apex1	100	63.551	ENSNGAG00000002725	-	87	68.478	Nannospalax_galili
ENSPKIG00000003504	apex1	88	52.482	ENSNGAG00000021748	-	71	56.118	Nannospalax_galili
ENSPKIG00000003504	apex1	88	87.273	ENSNBRG00000005334	apex1	81	87.319	Neolamprologus_brichardi
ENSPKIG00000003504	apex1	100	64.174	ENSNLEG00000010839	APEX1	88	68.231	Nomascus_leucogenys
ENSPKIG00000003504	apex1	100	65.615	ENSMEUG00000014519	APEX1	87	69.708	Notamacropus_eugenii
ENSPKIG00000003504	apex1	100	64.375	ENSOPRG00000014029	APEX1	87	68.231	Ochotona_princeps
ENSPKIG00000003504	apex1	94	50.495	ENSODEG00000004777	-	83	55.952	Octodon_degus
ENSPKIG00000003504	apex1	92	53.220	ENSODEG00000006583	-	86	53.357	Octodon_degus
ENSPKIG00000003504	apex1	100	64.596	ENSODEG00000001703	-	87	68.953	Octodon_degus
ENSPKIG00000003504	apex1	88	87.365	ENSONIG00000012089	apex1	89	87.681	Oreochromis_niloticus
ENSPKIG00000003504	apex1	87	68.000	ENSOANG00000008836	APEX1	68	68.000	Ornithorhynchus_anatinus
ENSPKIG00000003504	apex1	100	65.421	ENSOCUG00000005022	APEX1	87	69.314	Oryctolagus_cuniculus
ENSPKIG00000003504	apex1	99	85.256	ENSORLG00000012378	apex1	89	86.957	Oryzias_latipes
ENSPKIG00000003504	apex1	99	85.256	ENSORLG00020021371	apex1	89	86.957	Oryzias_latipes_hni
ENSPKIG00000003504	apex1	99	85.256	ENSORLG00015020089	apex1	89	86.957	Oryzias_latipes_hsok
ENSPKIG00000003504	apex1	99	85.256	ENSOMEG00000018876	apex1	89	87.319	Oryzias_melastigma
ENSPKIG00000003504	apex1	90	60.000	ENSOGAG00000029355	-	88	60.650	Otolemur_garnettii
ENSPKIG00000003504	apex1	100	64.798	ENSOGAG00000013335	-	87	68.953	Otolemur_garnettii
ENSPKIG00000003504	apex1	100	63.522	ENSOARG00000019740	-	87	68.116	Ovis_aries
ENSPKIG00000003504	apex1	98	54.633	ENSOARG00000014424	-	88	57.609	Ovis_aries
ENSPKIG00000003504	apex1	97	60.714	ENSOARG00000001876	-	86	65.038	Ovis_aries
ENSPKIG00000003504	apex1	100	64.486	ENSPPAG00000038760	APEX1	88	68.592	Pan_paniscus
ENSPKIG00000003504	apex1	100	64.486	ENSPPRG00000011794	APEX1	87	68.953	Panthera_pardus
ENSPKIG00000003504	apex1	100	64.907	ENSPTIG00000014829	APEX1	87	68.953	Panthera_tigris_altaica
ENSPKIG00000003504	apex1	100	64.486	ENSPTRG00000006093	APEX1	88	68.592	Pan_troglodytes
ENSPKIG00000003504	apex1	100	64.486	ENSPANG00000022757	APEX1	87	68.231	Papio_anubis
ENSPKIG00000003504	apex1	85	74.349	ENSPMGG00000016596	apex1	79	74.349	Periophthalmus_magnuspinnatus
ENSPKIG00000003504	apex1	100	63.580	ENSPEMG00000019097	Apex1	87	67.509	Peromyscus_maniculatus_bairdii
ENSPKIG00000003504	apex1	93	71.525	ENSPMAG00000007275	-	94	72.924	Petromyzon_marinus
ENSPKIG00000003504	apex1	89	68.817	ENSPCIG00000023274	APEX1	86	69.708	Phascolarctos_cinereus
ENSPKIG00000003504	apex1	99	84.615	ENSPFOG00000004178	apex1	89	88.043	Poecilia_formosa
ENSPKIG00000003504	apex1	99	84.295	ENSPLAG00000012779	apex1	89	87.319	Poecilia_latipinna
ENSPKIG00000003504	apex1	99	84.615	ENSPMEG00000019623	apex1	89	88.043	Poecilia_mexicana
ENSPKIG00000003504	apex1	99	83.974	ENSPREG00000014298	apex1	89	87.319	Poecilia_reticulata
ENSPKIG00000003504	apex1	100	64.486	ENSPPYG00000005565	APEX1	87	68.592	Pongo_abelii
ENSPKIG00000003504	apex1	100	62.305	ENSPCAG00000010376	APEX1	87	66.787	Procavia_capensis
ENSPKIG00000003504	apex1	100	64.174	ENSPCOG00000021564	APEX1	87	68.592	Propithecus_coquereli
ENSPKIG00000003504	apex1	100	64.087	ENSPVAG00000010736	APEX1	87	68.592	Pteropus_vampyrus
ENSPKIG00000003504	apex1	88	87.636	ENSPNYG00000023940	apex1	89	87.681	Pundamilia_nyererei
ENSPKIG00000003504	apex1	96	83.444	ENSPNAG00000020897	apex1	84	88.800	Pygocentrus_nattereri
ENSPKIG00000003504	apex1	100	64.198	ENSRNOG00000009663	Apex1	87	68.231	Rattus_norvegicus
ENSPKIG00000003504	apex1	100	64.798	ENSRBIG00000038325	APEX1	86	68.592	Rhinopithecus_bieti
ENSPKIG00000003504	apex1	100	64.798	ENSSBOG00000018921	-	87	69.314	Saimiri_boliviensis_boliviensis
ENSPKIG00000003504	apex1	100	57.460	ENSSBOG00000031372	-	90	60.289	Saimiri_boliviensis_boliviensis
ENSPKIG00000003504	apex1	100	62.346	ENSSHAG00000013524	APEX1	85	68.953	Sarcophilus_harrisii
ENSPKIG00000003504	apex1	100	87.580	ENSSFOG00015001948	apex1	95	89.796	Scleropages_formosus
ENSPKIG00000003504	apex1	99	80.635	ENSSMAG00000013348	apex1	88	85.507	Scophthalmus_maximus
ENSPKIG00000003504	apex1	99	84.615	ENSSDUG00000016377	apex1	89	86.957	Seriola_dumerili
ENSPKIG00000003504	apex1	99	83.333	ENSSLDG00000023005	apex1	89	85.507	Seriola_lalandi_dorsalis
ENSPKIG00000003504	apex1	90	73.239	ENSSPUG00000000531	APEX1	93	74.182	Sphenodon_punctatus
ENSPKIG00000003504	apex1	99	82.372	ENSSPAG00000000458	apex1	90	85.507	Stegastes_partitus
ENSPKIG00000003504	apex1	94	38.944	ENSSSCG00000039705	-	89	40.794	Sus_scrofa
ENSPKIG00000003504	apex1	100	64.486	ENSSSCG00000040060	-	87	68.841	Sus_scrofa
ENSPKIG00000003504	apex1	75	56.596	ENSTGUG00000014378	APEX1	100	56.596	Taeniopygia_guttata
ENSPKIG00000003504	apex1	88	84.477	ENSTRUG00000004268	apex1	84	84.420	Takifugu_rubripes
ENSPKIG00000003504	apex1	99	81.731	ENSTNIG00000005778	apex1	90	85.145	Tetraodon_nigroviridis
ENSPKIG00000003504	apex1	100	61.371	ENSTBEG00000006405	APEX1	87	65.343	Tupaia_belangeri
ENSPKIG00000003504	apex1	75	67.234	ENSTTRG00000007860	APEX1	100	67.234	Tursiops_truncatus
ENSPKIG00000003504	apex1	100	64.596	ENSUAMG00000010457	APEX1	87	68.592	Ursus_americanus
ENSPKIG00000003504	apex1	100	64.596	ENSUMAG00000009178	APEX1	87	68.592	Ursus_maritimus
ENSPKIG00000003504	apex1	75	62.979	ENSVPAG00000005083	APEX1	100	62.979	Vicugna_pacos
ENSPKIG00000003504	apex1	100	66.149	ENSVVUG00000009010	APEX1	87	69.675	Vulpes_vulpes
ENSPKIG00000003504	apex1	100	67.722	ENSXETG00000024773	apex1	87	72.000	Xenopus_tropicalis
ENSPKIG00000003504	apex1	99	84.615	ENSXCOG00000015233	apex1	89	88.043	Xiphophorus_couchianus
ENSPKIG00000003504	apex1	99	84.615	ENSXMAG00000006195	apex1	89	88.043	Xiphophorus_maculatus