EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000003578 (Gene tree)
Gene ID: 111834050
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 22558 bases
Position: chrPGUA01000468.1:233346-255903
Accession: 111834050
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000017834	RRM_1	PF00076.22	4.7e-34	1	2
ENSPKIP00000017834	RRM_1	PF00076.22	4.7e-34	2	2
ENSPKIP00000017813	RRM_1	PF00076.22	4.9e-34	1	2
ENSPKIP00000017813	RRM_1	PF00076.22	4.9e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000042332	-	4693	-	ENSPKIP00000017813	523 (aa)	XP_023648694	UPI000CD6613A
ENSPKIT00000042353	-	1548	-	ENSPKIP00000017834	515 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000003578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000003578	pspc1	65	65.982	ENSPKIG00000019475	-	92	72.067
ENSPKIG00000003578	pspc1	68	63.073	ENSPKIG00000023035	sfpq	75	58.487
ENSPKIG00000003578	pspc1	74	64.567	ENSPKIG00000014500	nono	89	64.589

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003578	pspc1	81	77.880	ENSG00000121390	PSPC1	83	83.841	Homo_sapiens
ENSPKIG00000003578	pspc1	100	70.709	ENSAPOG00000015946	pspc1	100	70.336	Acanthochromis_polyacanthus
ENSPKIG00000003578	pspc1	86	73.932	ENSAMEG00000017420	PSPC1	89	74.514	Ailuropoda_melanoleuca
ENSPKIG00000003578	pspc1	100	63.878	ENSACIG00000018695	pspc1	100	59.134	Amphilophus_citrinellus
ENSPKIG00000003578	pspc1	100	70.000	ENSAOCG00000005279	pspc1	100	67.844	Amphiprion_ocellaris
ENSPKIG00000003578	pspc1	100	70.391	ENSAPEG00000015927	pspc1	100	69.346	Amphiprion_percula
ENSPKIG00000003578	pspc1	100	61.922	ENSATEG00000004878	pspc1	100	56.618	Anabas_testudineus
ENSPKIG00000003578	pspc1	78	72.902	ENSAPLG00000006246	PSPC1	91	77.174	Anas_platyrhynchos
ENSPKIG00000003578	pspc1	88	59.827	ENSAPLG00000003643	SFPQ	80	61.176	Anas_platyrhynchos
ENSPKIG00000003578	pspc1	89	71.488	ENSACAG00000002093	PSPC1	88	71.726	Anolis_carolinensis
ENSPKIG00000003578	pspc1	66	62.185	ENSACAG00000013307	-	62	59.214	Anolis_carolinensis
ENSPKIG00000003578	pspc1	88	74.414	ENSANAG00000000059	PSPC1	98	74.026	Aotus_nancymaae
ENSPKIG00000003578	pspc1	100	62.738	ENSACLG00000027220	pspc1	100	57.741	Astatotilapia_calliptera
ENSPKIG00000003578	pspc1	100	72.067	ENSAMXG00000036881	pspc1	100	74.766	Astyanax_mexicanus
ENSPKIG00000003578	pspc1	95	70.059	ENSBTAG00000003934	PSPC1	82	78.588	Bos_taurus
ENSPKIG00000003578	pspc1	88	74.414	ENSCJAG00000004554	PSPC1	89	75.000	Callithrix_jacchus
ENSPKIG00000003578	pspc1	81	77.419	ENSCAFG00020002009	PSPC1	98	76.042	Canis_lupus_dingo
ENSPKIG00000003578	pspc1	95	70.059	ENSCHIG00000016708	PSPC1	82	78.588	Capra_hircus
ENSPKIG00000003578	pspc1	80	64.802	ENSTSYG00000032882	PSPC1	80	70.137	Carlito_syrichta
ENSPKIG00000003578	pspc1	81	77.523	ENSCPOG00000000395	PSPC1	98	75.000	Cavia_porcellus
ENSPKIG00000003578	pspc1	88	74.414	ENSCCAG00000033498	PSPC1	89	75.000	Cebus_capucinus
ENSPKIG00000003578	pspc1	82	76.993	ENSCATG00000036434	PSPC1	92	82.883	Cercocebus_atys
ENSPKIG00000003578	pspc1	68	77.989	ENSCLAG00000005241	PSPC1	81	78.512	Chinchilla_lanigera
ENSPKIG00000003578	pspc1	80	73.131	ENSCHOG00000008913	PSPC1	81	73.821	Choloepus_hoffmanni
ENSPKIG00000003578	pspc1	89	73.895	ENSCPBG00000020859	PSPC1	81	77.700	Chrysemys_picta_bellii
ENSPKIG00000003578	pspc1	56	61.168	ENSCSAVG00000003533	-	53	62.590	Ciona_savignyi
ENSPKIG00000003578	pspc1	51	85.932	ENSCANG00000018948	PSPC1	87	85.932	Colobus_angolensis_palliatus
ENSPKIG00000003578	pspc1	90	72.464	ENSCGRG00001018368	Pspc1	90	74.741	Cricetulus_griseus_chok1gshd
ENSPKIG00000003578	pspc1	90	72.464	ENSCGRG00000011724	Pspc1	90	74.741	Cricetulus_griseus_crigri
ENSPKIG00000003578	pspc1	100	63.585	ENSCVAG00000007679	-	100	61.624	Cyprinodon_variegatus
ENSPKIG00000003578	pspc1	100	71.048	ENSDARG00000006621	pspc1	100	75.245	Danio_rerio
ENSPKIG00000003578	pspc1	89	73.474	ENSDNOG00000011078	PSPC1	81	78.588	Dasypus_novemcinctus
ENSPKIG00000003578	pspc1	89	70.921	ENSDORG00000016050	Pspc1	89	72.385	Dipodomys_ordii
ENSPKIG00000003578	pspc1	55	83.168	ENSETEG00000000502	-	72	83.168	Echinops_telfairi
ENSPKIG00000003578	pspc1	88	59.544	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSPKIG00000003578	pspc1	55	46.732	ENSEBUG00000010133	pspc1	73	48.571	Eptatretus_burgeri
ENSPKIG00000003578	pspc1	89	73.486	ENSEASG00005000119	PSPC1	93	79.167	Equus_asinus_asinus
ENSPKIG00000003578	pspc1	89	73.486	ENSECAG00000017286	PSPC1	93	79.167	Equus_caballus
ENSPKIG00000003578	pspc1	50	75.000	ENSEEUG00000011288	-	61	66.250	Erinaceus_europaeus
ENSPKIG00000003578	pspc1	100	70.513	ENSELUG00000003746	pspc1	94	78.827	Esox_lucius
ENSPKIG00000003578	pspc1	81	77.650	ENSFCAG00000027841	PSPC1	93	78.453	Felis_catus
ENSPKIG00000003578	pspc1	89	74.105	ENSFALG00000008750	PSPC1	93	71.227	Ficedula_albicollis
ENSPKIG00000003578	pspc1	92	71.429	ENSFDAG00000002617	PSPC1	93	71.959	Fukomys_damarensis
ENSPKIG00000003578	pspc1	89	68.870	ENSGMOG00000015074	pspc1	97	63.757	Gadus_morhua
ENSPKIG00000003578	pspc1	99	68.352	ENSGALG00000017142	PSPC1	93	68.238	Gallus_gallus
ENSPKIG00000003578	pspc1	75	71.106	ENSGAFG00000006327	pspc1	81	71.106	Gambusia_affinis
ENSPKIG00000003578	pspc1	89	69.379	ENSGACG00000014901	pspc1	92	78.354	Gasterosteus_aculeatus
ENSPKIG00000003578	pspc1	88	58.369	ENSGAGG00000017325	-	65	59.579	Gopherus_agassizii
ENSPKIG00000003578	pspc1	89	73.895	ENSGAGG00000019164	PSPC1	81	77.700	Gopherus_agassizii
ENSPKIG00000003578	pspc1	81	77.880	ENSGGOG00000003414	PSPC1	83	83.841	Gorilla_gorilla
ENSPKIG00000003578	pspc1	100	69.418	ENSHBUG00000001139	pspc1	100	64.982	Haplochromis_burtoni
ENSPKIG00000003578	pspc1	88	73.561	ENSHGLG00000018811	PSPC1	93	72.165	Heterocephalus_glaber_female
ENSPKIG00000003578	pspc1	57	84.589	ENSHGLG00100007962	PSPC1	89	85.172	Heterocephalus_glaber_male
ENSPKIG00000003578	pspc1	73	73.766	ENSHCOG00000013251	pspc1	99	64.667	Hippocampus_comes
ENSPKIG00000003578	pspc1	100	74.906	ENSIPUG00000013192	pspc1	100	75.236	Ictalurus_punctatus
ENSPKIG00000003578	pspc1	89	73.849	ENSSTOG00000026833	PSPC1	83	83.841	Ictidomys_tridecemlineatus
ENSPKIG00000003578	pspc1	81	77.189	ENSJJAG00000018334	Pspc1	84	76.298	Jaculus_jaculus
ENSPKIG00000003578	pspc1	89	59.477	ENSKMAG00000013525	-	100	52.030	Kryptolebias_marmoratus
ENSPKIG00000003578	pspc1	98	66.858	ENSLBEG00000004474	pspc1	97	65.458	Labrus_bergylta
ENSPKIG00000003578	pspc1	88	73.673	ENSLACG00000010762	PSPC1	89	73.597	Latimeria_chalumnae
ENSPKIG00000003578	pspc1	100	73.734	ENSLOCG00000010832	pspc1	99	76.360	Lepisosteus_oculatus
ENSPKIG00000003578	pspc1	81	77.778	ENSLAFG00000010968	PSPC1	82	78.322	Loxodonta_africana
ENSPKIG00000003578	pspc1	81	77.880	ENSMFAG00000032728	PSPC1	92	84.195	Macaca_fascicularis
ENSPKIG00000003578	pspc1	81	77.880	ENSMMUG00000020262	PSPC1	91	82.544	Macaca_mulatta
ENSPKIG00000003578	pspc1	81	77.880	ENSMNEG00000027401	PSPC1	98	72.591	Macaca_nemestrina
ENSPKIG00000003578	pspc1	68	77.989	ENSMLEG00000039043	PSPC1	85	78.788	Mandrillus_leucophaeus
ENSPKIG00000003578	pspc1	100	66.850	ENSMAMG00000004333	pspc1	100	66.544	Mastacembelus_armatus
ENSPKIG00000003578	pspc1	100	62.738	ENSMZEG00005005726	pspc1	100	57.741	Maylandia_zebra
ENSPKIG00000003578	pspc1	78	72.792	ENSMGAG00000015134	PSPC1	91	77.027	Meleagris_gallopavo
ENSPKIG00000003578	pspc1	76	72.372	ENSMAUG00000021067	Pspc1	88	72.616	Mesocricetus_auratus
ENSPKIG00000003578	pspc1	89	75.732	ENSMICG00000013970	PSPC1	98	75.521	Microcebus_murinus
ENSPKIG00000003578	pspc1	81	77.650	ENSMOCG00000006060	Pspc1	82	78.322	Microtus_ochrogaster
ENSPKIG00000003578	pspc1	69	57.025	ENSMMOG00000004352	pspc1	66	54.521	Mola_mola
ENSPKIG00000003578	pspc1	80	77.726	ENSMODG00000008029	PSPC1	69	77.958	Monodelphis_domestica
ENSPKIG00000003578	pspc1	100	67.416	ENSMALG00000008914	pspc1	100	64.880	Monopterus_albus
ENSPKIG00000003578	pspc1	81	77.701	MGP_CAROLIEiJ_G0019341	Pspc1	87	79.259	Mus_caroli
ENSPKIG00000003578	pspc1	81	77.701	ENSMUSG00000021938	Pspc1	87	79.259	Mus_musculus
ENSPKIG00000003578	pspc1	89	73.069	MGP_PahariEiJ_G0030359	Pspc1	87	79.259	Mus_pahari
ENSPKIG00000003578	pspc1	81	77.701	MGP_SPRETEiJ_G0020232	Pspc1	87	79.259	Mus_spretus
ENSPKIG00000003578	pspc1	81	77.419	ENSMPUG00000013347	PSPC1	89	74.298	Mustela_putorius_furo
ENSPKIG00000003578	pspc1	89	72.557	ENSMLUG00000017663	PSPC1	89	74.034	Myotis_lucifugus
ENSPKIG00000003578	pspc1	89	74.268	ENSNGAG00000011271	Pspc1	82	78.322	Nannospalax_galili
ENSPKIG00000003578	pspc1	79	65.640	ENSNBRG00000014059	pspc1	99	65.166	Neolamprologus_brichardi
ENSPKIG00000003578	pspc1	81	77.880	ENSNLEG00000001294	PSPC1	82	78.555	Nomascus_leucogenys
ENSPKIG00000003578	pspc1	65	79.293	ENSMEUG00000000476	PSPC1	66	79.293	Notamacropus_eugenii
ENSPKIG00000003578	pspc1	89	64.435	ENSODEG00000007817	-	88	64.009	Octodon_degus
ENSPKIG00000003578	pspc1	89	66.322	ENSODEG00000019012	-	99	61.302	Octodon_degus
ENSPKIG00000003578	pspc1	100	70.169	ENSONIG00000012010	pspc1	99	67.706	Oreochromis_niloticus
ENSPKIG00000003578	pspc1	82	58.810	ENSOANG00000011381	-	87	59.310	Ornithorhynchus_anatinus
ENSPKIG00000003578	pspc1	68	77.717	ENSOANG00000009017	-	100	70.631	Ornithorhynchus_anatinus
ENSPKIG00000003578	pspc1	81	77.701	ENSOCUG00000006153	PSPC1	82	78.372	Oryctolagus_cuniculus
ENSPKIG00000003578	pspc1	100	64.432	ENSORLG00000004232	-	100	60.108	Oryzias_latipes
ENSPKIG00000003578	pspc1	89	70.450	ENSORLG00020000578	PSPC1	100	59.567	Oryzias_latipes_hni
ENSPKIG00000003578	pspc1	100	65.177	ENSORLG00015017480	pspc1	100	60.901	Oryzias_latipes_hsok
ENSPKIG00000003578	pspc1	81	77.650	ENSOGAG00000012643	PSPC1	82	78.322	Otolemur_garnettii
ENSPKIG00000003578	pspc1	88	73.573	ENSOARG00000014163	PSPC1	87	75.887	Ovis_aries
ENSPKIG00000003578	pspc1	80	71.395	ENSPPAG00000009836	PSPC1	92	84.615	Pan_paniscus
ENSPKIG00000003578	pspc1	81	77.650	ENSPPRG00000008833	PSPC1	89	74.514	Panthera_pardus
ENSPKIG00000003578	pspc1	68	77.717	ENSPTIG00000016917	PSPC1	76	78.512	Panthera_tigris_altaica
ENSPKIG00000003578	pspc1	80	78.322	ENSPTRG00000005677	PSPC1	83	83.841	Pan_troglodytes
ENSPKIG00000003578	pspc1	81	77.650	ENSPANG00000001992	PSPC1	91	83.636	Papio_anubis
ENSPKIG00000003578	pspc1	89	73.263	ENSPSIG00000005168	PSPC1	81	77.230	Pelodiscus_sinensis
ENSPKIG00000003578	pspc1	68	67.778	ENSPMGG00000015135	pspc1	98	67.507	Periophthalmus_magnuspinnatus
ENSPKIG00000003578	pspc1	81	77.650	ENSPEMG00000015214	Pspc1	82	78.322	Peromyscus_maniculatus_bairdii
ENSPKIG00000003578	pspc1	81	77.189	ENSPCIG00000017680	PSPC1	82	77.855	Phascolarctos_cinereus
ENSPKIG00000003578	pspc1	98	65.589	ENSPFOG00000003362	pspc1	99	64.126	Poecilia_formosa
ENSPKIG00000003578	pspc1	73	60.769	ENSPLAG00000004407	-	55	61.842	Poecilia_latipinna
ENSPKIG00000003578	pspc1	100	65.177	ENSPLAG00000011540	pspc1	100	63.752	Poecilia_latipinna
ENSPKIG00000003578	pspc1	73	61.697	ENSPMEG00000001025	-	54	62.368	Poecilia_mexicana
ENSPKIG00000003578	pspc1	100	64.804	ENSPMEG00000008322	pspc1	100	63.388	Poecilia_mexicana
ENSPKIG00000003578	pspc1	100	64.432	ENSPREG00000007786	pspc1	100	63.024	Poecilia_reticulata
ENSPKIG00000003578	pspc1	81	77.650	ENSPPYG00000005186	PSPC1	86	79.703	Pongo_abelii
ENSPKIG00000003578	pspc1	89	73.191	ENSPCOG00000014364	PSPC1	81	75.534	Propithecus_coquereli
ENSPKIG00000003578	pspc1	89	73.840	ENSPVAG00000005036	PSPC1	82	77.882	Pteropus_vampyrus
ENSPKIG00000003578	pspc1	100	62.738	ENSPNYG00000008893	pspc1	100	57.741	Pundamilia_nyererei
ENSPKIG00000003578	pspc1	100	76.996	ENSPNAG00000016511	pspc1	97	76.872	Pygocentrus_nattereri
ENSPKIG00000003578	pspc1	81	77.650	ENSRNOG00000020782	Pspc1	87	79.208	Rattus_norvegicus
ENSPKIG00000003578	pspc1	85	75.604	ENSRBIG00000036057	PSPC1	96	80.516	Rhinopithecus_bieti
ENSPKIG00000003578	pspc1	84	76.169	ENSRROG00000036334	PSPC1	98	74.936	Rhinopithecus_roxellana
ENSPKIG00000003578	pspc1	80	64.403	ENSSBOG00000028172	PSPC1	91	81.949	Saimiri_boliviensis_boliviensis
ENSPKIG00000003578	pspc1	81	71.560	ENSSHAG00000004696	PSPC1	82	72.158	Sarcophilus_harrisii
ENSPKIG00000003578	pspc1	89	91.239	ENSSFOG00015001395	pspc1	100	91.453	Scleropages_formosus
ENSPKIG00000003578	pspc1	100	68.624	ENSSMAG00000001761	pspc1	100	67.706	Scophthalmus_maximus
ENSPKIG00000003578	pspc1	89	73.975	ENSSDUG00000010651	pspc1	100	67.636	Seriola_dumerili
ENSPKIG00000003578	pspc1	100	63.931	ENSSLDG00000004284	pspc1	100	59.484	Seriola_lalandi_dorsalis
ENSPKIG00000003578	pspc1	81	71.889	ENSSARG00000000888	PSPC1	82	72.261	Sorex_araneus
ENSPKIG00000003578	pspc1	91	48.750	ENSSPUG00000001136	-	52	58.120	Sphenodon_punctatus
ENSPKIG00000003578	pspc1	89	63.368	ENSSPUG00000008550	PSPC1	80	66.905	Sphenodon_punctatus
ENSPKIG00000003578	pspc1	100	69.581	ENSSPAG00000001921	pspc1	100	67.956	Stegastes_partitus
ENSPKIG00000003578	pspc1	80	77.907	ENSSSCG00000009569	PSPC1	84	84.259	Sus_scrofa
ENSPKIG00000003578	pspc1	89	74.105	ENSTGUG00000011295	PSPC1	91	77.934	Taeniopygia_guttata
ENSPKIG00000003578	pspc1	98	63.107	ENSTRUG00000011335	pspc1	86	66.222	Takifugu_rubripes
ENSPKIG00000003578	pspc1	89	67.312	ENSTNIG00000010358	pspc1	98	60.117	Tetraodon_nigroviridis
ENSPKIG00000003578	pspc1	89	64.693	ENSTBEG00000002361	PSPC1	85	66.059	Tupaia_belangeri
ENSPKIG00000003578	pspc1	86	74.464	ENSTTRG00000003343	PSPC1	89	75.054	Tursiops_truncatus
ENSPKIG00000003578	pspc1	62	78.899	ENSUAMG00000012309	PSPC1	99	76.301	Ursus_americanus
ENSPKIG00000003578	pspc1	81	77.189	ENSUMAG00000013993	PSPC1	92	83.537	Ursus_maritimus
ENSPKIG00000003578	pspc1	77	74.757	ENSVPAG00000010029	PSPC1	91	79.063	Vicugna_pacos
ENSPKIG00000003578	pspc1	81	77.419	ENSVVUG00000006414	PSPC1	99	76.104	Vulpes_vulpes
ENSPKIG00000003578	pspc1	75	71.247	ENSXCOG00000017438	pspc1	93	71.247	Xiphophorus_couchianus
ENSPKIG00000003578	pspc1	75	71.501	ENSXMAG00000007929	pspc1	93	71.501	Xiphophorus_maculatus