EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000003810 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 15389 bases
Position: chrPGUA01000158.1:587908-603296
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000018243	ResIII	PF04851.15	6.8e-11	1	1
ENSPKIP00000018305	ResIII	PF04851.15	2.3e-10	1	1
ENSPKIP00000018198	ResIII	PF04851.15	7e-09	1	1
ENSPKIP00000018243	DEAD	PF00270.29	8.8e-27	1	1
ENSPKIP00000018305	DEAD	PF00270.29	4.2e-26	1	1
ENSPKIP00000018198	DEAD	PF00270.29	2.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000042728	-	2508	-	ENSPKIP00000018198	836 (aa)	-	-
ENSPKIT00000042835	-	3126	-	ENSPKIP00000018305	1041 (aa)	-	-
ENSPKIT00000042773	-	1089	-	ENSPKIP00000018243	362 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000003810's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003810's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000003810	hfm1	77	34.798	ENSPKIG00000013639	ascc3	59	33.385
ENSPKIG00000003810	hfm1	97	30.454	ENSPKIG00000014762	snrnp200	77	30.504

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003810	hfm1	95	67.754	ENSG00000162669	HFM1	62	67.416	Homo_sapiens
ENSPKIG00000003810	hfm1	99	71.479	ENSAPOG00000005304	hfm1	98	71.479	Acanthochromis_polyacanthus
ENSPKIG00000003810	hfm1	95	68.491	ENSAMEG00000000432	HFM1	73	61.085	Ailuropoda_melanoleuca
ENSPKIG00000003810	hfm1	94	71.552	ENSACIG00000021553	hfm1	80	70.045	Amphilophus_citrinellus
ENSPKIG00000003810	hfm1	99	72.047	ENSAOCG00000022839	hfm1	96	74.968	Amphiprion_ocellaris
ENSPKIG00000003810	hfm1	99	71.495	ENSAPEG00000014316	hfm1	96	75.032	Amphiprion_percula
ENSPKIG00000003810	hfm1	95	72.960	ENSATEG00000019181	hfm1	74	71.682	Anabas_testudineus
ENSPKIG00000003810	hfm1	95	68.034	ENSAPLG00000013639	HFM1	62	67.869	Anas_platyrhynchos
ENSPKIG00000003810	hfm1	95	67.273	ENSANAG00000029513	HFM1	62	66.931	Aotus_nancymaae
ENSPKIG00000003810	hfm1	99	71.531	ENSACLG00000009033	hfm1	99	71.531	Astatotilapia_calliptera
ENSPKIG00000003810	hfm1	94	74.847	ENSAMXG00000006108	hfm1	68	73.702	Astyanax_mexicanus
ENSPKIG00000003810	hfm1	95	68.491	ENSBTAG00000020856	HFM1	63	66.484	Bos_taurus
ENSPKIG00000003810	hfm1	95	67.394	ENSCJAG00000001843	HFM1	64	65.498	Callithrix_jacchus
ENSPKIG00000003810	hfm1	95	68.210	ENSCAFG00000020187	HFM1	63	66.851	Canis_familiaris
ENSPKIG00000003810	hfm1	96	66.907	ENSTSYG00000014250	HFM1	62	66.742	Carlito_syrichta
ENSPKIG00000003810	hfm1	95	67.995	ENSCPOG00000007421	HFM1	64	67.753	Cavia_porcellus
ENSPKIG00000003810	hfm1	95	67.030	ENSCCAG00000033206	HFM1	64	65.351	Cebus_capucinus
ENSPKIG00000003810	hfm1	95	67.758	ENSCATG00000030987	HFM1	62	67.114	Cercocebus_atys
ENSPKIG00000003810	hfm1	95	68.227	ENSCLAG00000005173	HFM1	60	66.742	Chinchilla_lanigera
ENSPKIG00000003810	hfm1	80	51.955	ENSCSAVG00000005094	-	100	53.064	Ciona_savignyi
ENSPKIG00000003810	hfm1	91	64.512	ENSCGRG00001016995	Hfm1	71	57.400	Cricetulus_griseus_chok1gshd
ENSPKIG00000003810	hfm1	95	66.223	ENSCGRG00000017181	Hfm1	62	65.579	Cricetulus_griseus_crigri
ENSPKIG00000003810	hfm1	94	70.777	ENSCSEG00000017659	hfm1	97	63.148	Cynoglossus_semilaevis
ENSPKIG00000003810	hfm1	82	72.230	ENSCVAG00000005075	hfm1	86	74.402	Cyprinodon_variegatus
ENSPKIG00000003810	hfm1	96	74.570	ENSDARG00000104288	hfm1	76	73.841	Danio_rerio
ENSPKIG00000003810	hfm1	95	66.787	ENSDNOG00000004776	HFM1	60	66.328	Dasypus_novemcinctus
ENSPKIG00000003810	hfm1	95	64.615	ENSDORG00000014661	Hfm1	62	64.609	Dipodomys_ordii
ENSPKIG00000003810	hfm1	54	64.677	ENSEBUG00000006133	-	91	63.927	Eptatretus_burgeri
ENSPKIG00000003810	hfm1	92	68.335	ENSEASG00005015424	HFM1	83	66.667	Equus_asinus_asinus
ENSPKIG00000003810	hfm1	95	68.319	ENSECAG00000024039	HFM1	60	68.090	Equus_caballus
ENSPKIG00000003810	hfm1	99	74.468	ENSELUG00000018944	hfm1	97	74.468	Esox_lucius
ENSPKIG00000003810	hfm1	95	68.491	ENSFCAG00000029116	HFM1	73	61.064	Felis_catus
ENSPKIG00000003810	hfm1	99	66.939	ENSFALG00000001781	HFM1	62	67.986	Ficedula_albicollis
ENSPKIG00000003810	hfm1	95	67.874	ENSFDAG00000020816	HFM1	60	67.562	Fukomys_damarensis
ENSPKIG00000003810	hfm1	94	68.881	ENSGMOG00000017436	hfm1	93	67.933	Gadus_morhua
ENSPKIG00000003810	hfm1	99	71.312	ENSGAFG00000018093	hfm1	99	71.312	Gambusia_affinis
ENSPKIG00000003810	hfm1	94	68.681	ENSGACG00000015686	hfm1	93	68.380	Gasterosteus_aculeatus
ENSPKIG00000003810	hfm1	54	73.232	ENSGAGG00000025197	-	60	73.232	Gopherus_agassizii
ENSPKIG00000003810	hfm1	95	67.633	ENSGGOG00000038524	HFM1	62	67.191	Gorilla_gorilla
ENSPKIG00000003810	hfm1	94	70.936	ENSHBUG00000007309	hfm1	95	64.145	Haplochromis_burtoni
ENSPKIG00000003810	hfm1	99	71.497	ENSHCOG00000019632	hfm1	99	71.497	Hippocampus_comes
ENSPKIG00000003810	hfm1	97	76.667	ENSIPUG00000017020	hfm1	95	72.811	Ictalurus_punctatus
ENSPKIG00000003810	hfm1	95	66.184	ENSJJAG00000017198	Hfm1	64	65.695	Jaculus_jaculus
ENSPKIG00000003810	hfm1	94	71.149	ENSKMAG00000002282	hfm1	91	68.973	Kryptolebias_marmoratus
ENSPKIG00000003810	hfm1	99	73.866	ENSLBEG00000006759	hfm1	98	73.866	Labrus_bergylta
ENSPKIG00000003810	hfm1	94	68.864	ENSLACG00000010698	HFM1	85	68.521	Latimeria_chalumnae
ENSPKIG00000003810	hfm1	95	75.151	ENSLOCG00000004931	hfm1	85	73.160	Lepisosteus_oculatus
ENSPKIG00000003810	hfm1	78	68.382	ENSLAFG00000015903	-	90	70.833	Loxodonta_africana
ENSPKIG00000003810	hfm1	95	65.576	ENSMFAG00000003649	HFM1	62	64.397	Macaca_fascicularis
ENSPKIG00000003810	hfm1	95	67.754	ENSMMUG00000006819	HFM1	62	67.114	Macaca_mulatta
ENSPKIG00000003810	hfm1	99	72.401	ENSMAMG00000004623	hfm1	99	72.401	Mastacembelus_armatus
ENSPKIG00000003810	hfm1	99	71.531	ENSMZEG00005004679	hfm1	99	71.531	Maylandia_zebra
ENSPKIG00000003810	hfm1	87	66.446	ENSMGAG00000008437	HFM1	96	68.264	Meleagris_gallopavo
ENSPKIG00000003810	hfm1	95	66.223	ENSMAUG00000018858	Hfm1	62	65.579	Mesocricetus_auratus
ENSPKIG00000003810	hfm1	95	67.310	ENSMICG00000037935	HFM1	62	67.303	Microcebus_murinus
ENSPKIG00000003810	hfm1	95	66.949	ENSMOCG00000014812	Hfm1	62	65.917	Microtus_ochrogaster
ENSPKIG00000003810	hfm1	99	73.678	ENSMMOG00000006148	hfm1	98	73.678	Mola_mola
ENSPKIG00000003810	hfm1	99	72.619	ENSMALG00000002401	hfm1	98	72.619	Monopterus_albus
ENSPKIG00000003810	hfm1	86	70.992	MGP_CAROLIEiJ_G0027496	Hfm1	57	73.729	Mus_caroli
ENSPKIG00000003810	hfm1	95	66.344	ENSMUSG00000043410	Hfm1	62	65.579	Mus_musculus
ENSPKIG00000003810	hfm1	95	66.223	MGP_PahariEiJ_G0017268	Hfm1	62	65.467	Mus_pahari
ENSPKIG00000003810	hfm1	95	66.586	MGP_SPRETEiJ_G0028495	Hfm1	62	65.917	Mus_spretus
ENSPKIG00000003810	hfm1	95	68.127	ENSMPUG00000004594	HFM1	61	66.704	Mustela_putorius_furo
ENSPKIG00000003810	hfm1	95	67.633	ENSMLUG00000010200	HFM1	63	66.593	Myotis_lucifugus
ENSPKIG00000003810	hfm1	99	70.778	ENSNBRG00000002910	hfm1	99	70.778	Neolamprologus_brichardi
ENSPKIG00000003810	hfm1	95	65.659	ENSNLEG00000010285	HFM1	62	64.831	Nomascus_leucogenys
ENSPKIG00000003810	hfm1	80	68.531	ENSMEUG00000015788	HFM1	56	60.811	Notamacropus_eugenii
ENSPKIG00000003810	hfm1	95	62.394	ENSOPRG00000013916	HFM1	60	61.988	Ochotona_princeps
ENSPKIG00000003810	hfm1	96	71.687	ENSONIG00000010590	hfm1	85	71.173	Oreochromis_niloticus
ENSPKIG00000003810	hfm1	94	73.214	ENSORLG00000026844	hfm1	99	73.214	Oryzias_latipes
ENSPKIG00000003810	hfm1	96	62.530	ENSORLG00020002951	hfm1	70	62.402	Oryzias_latipes_hni
ENSPKIG00000003810	hfm1	96	70.277	ENSOMEG00000016474	hfm1	62	69.888	Oryzias_melastigma
ENSPKIG00000003810	hfm1	96	67.711	ENSOGAG00000032369	HFM1	74	67.293	Otolemur_garnettii
ENSPKIG00000003810	hfm1	95	68.523	ENSOARG00000015812	HFM1	62	68.090	Ovis_aries
ENSPKIG00000003810	hfm1	95	67.995	ENSPPAG00000024582	HFM1	67	67.640	Pan_paniscus
ENSPKIG00000003810	hfm1	95	68.491	ENSPPRG00000003270	HFM1	73	60.911	Panthera_pardus
ENSPKIG00000003810	hfm1	95	68.491	ENSPTIG00000018881	HFM1	73	61.006	Panthera_tigris_altaica
ENSPKIG00000003810	hfm1	95	67.995	ENSPTRG00000000948	HFM1	62	67.640	Pan_troglodytes
ENSPKIG00000003810	hfm1	95	67.758	ENSPANG00000009838	HFM1	62	67.114	Papio_anubis
ENSPKIG00000003810	hfm1	94	72.265	ENSPMGG00000011059	hfm1	98	72.265	Periophthalmus_magnuspinnatus
ENSPKIG00000003810	hfm1	95	65.981	ENSPEMG00000022852	Hfm1	62	65.354	Peromyscus_maniculatus_bairdii
ENSPKIG00000003810	hfm1	95	69.221	ENSPCIG00000014233	HFM1	60	67.865	Phascolarctos_cinereus
ENSPKIG00000003810	hfm1	94	71.921	ENSPFOG00000017194	hfm1	85	70.661	Poecilia_formosa
ENSPKIG00000003810	hfm1	94	72.167	ENSPLAG00000000571	hfm1	95	63.424	Poecilia_latipinna
ENSPKIG00000003810	hfm1	94	72.044	ENSPMEG00000019475	hfm1	95	64.410	Poecilia_mexicana
ENSPKIG00000003810	hfm1	99	71.362	ENSPREG00000007803	hfm1	99	71.362	Poecilia_reticulata
ENSPKIG00000003810	hfm1	95	67.836	ENSPPYG00000001163	HFM1	62	67.303	Pongo_abelii
ENSPKIG00000003810	hfm1	95	62.833	ENSPVAG00000009713	HFM1	63	61.728	Pteropus_vampyrus
ENSPKIG00000003810	hfm1	99	71.207	ENSPNYG00000001795	hfm1	99	71.207	Pundamilia_nyererei
ENSPKIG00000003810	hfm1	96	76.799	ENSPNAG00000010865	hfm1	82	76.799	Pygocentrus_nattereri
ENSPKIG00000003810	hfm1	95	66.586	ENSRNOG00000023299	Hfm1	62	65.843	Rattus_norvegicus
ENSPKIG00000003810	hfm1	95	67.515	ENSRROG00000045569	HFM1	62	67.002	Rhinopithecus_roxellana
ENSPKIG00000003810	hfm1	95	67.636	ENSSBOG00000027456	HFM1	63	67.079	Saimiri_boliviensis_boliviensis
ENSPKIG00000003810	hfm1	69	68.212	ENSSHAG00000014616	-	68	69.357	Sarcophilus_harrisii
ENSPKIG00000003810	hfm1	96	81.325	ENSSFOG00015020129	hfm1	70	80.418	Scleropages_formosus
ENSPKIG00000003810	hfm1	95	71.481	ENSSMAG00000006907	hfm1	87	70.964	Scophthalmus_maximus
ENSPKIG00000003810	hfm1	99	71.495	ENSSDUG00000011424	hfm1	98	71.495	Seriola_dumerili
ENSPKIG00000003810	hfm1	99	70.286	ENSSLDG00000016386	hfm1	99	70.286	Seriola_lalandi_dorsalis
ENSPKIG00000003810	hfm1	95	47.354	ENSSPUG00000003380	-	90	47.354	Sphenodon_punctatus
ENSPKIG00000003810	hfm1	99	72.281	ENSSPAG00000001023	hfm1	98	72.281	Stegastes_partitus
ENSPKIG00000003810	hfm1	95	68.198	ENSSSCG00000006912	HFM1	65	67.640	Sus_scrofa
ENSPKIG00000003810	hfm1	94	68.673	ENSTGUG00000006172	HFM1	93	67.079	Taeniopygia_guttata
ENSPKIG00000003810	hfm1	55	73.650	ENSTNIG00000006962	hfm1	96	73.504	Tetraodon_nigroviridis
ENSPKIG00000003810	hfm1	95	67.836	ENSTTRG00000013933	HFM1	63	67.607	Tursiops_truncatus
ENSPKIG00000003810	hfm1	95	65.580	ENSVPAG00000011331	HFM1	63	65.006	Vicugna_pacos
ENSPKIG00000003810	hfm1	92	67.920	ENSVVUG00000020760	HFM1	84	66.282	Vulpes_vulpes
ENSPKIG00000003810	hfm1	99	70.771	ENSXMAG00000004178	hfm1	99	70.771	Xiphophorus_maculatus