EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000003852 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 6633 bases
Position: chrPGUA01000610.1:105762-112394
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000018201	TruB_N	PF01509.18	5e-32	1	1
ENSPKIP00000018188	TruB_N	PF01509.18	8.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000042731	-	1972	-	ENSPKIP00000018201	231 (aa)	-	-
ENSPKIT00000042718	-	2260	-	ENSPKIP00000018188	187 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000003852's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000003852	trub1	74	30.556	ENSPKIG00000019769	trub2	58	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003852	trub1	72	80.952	ENSAPOG00000020565	trub1	61	80.952	Acanthochromis_polyacanthus
ENSPKIG00000003852	trub1	72	81.548	ENSACIG00000003060	trub1	63	81.548	Amphilophus_citrinellus
ENSPKIG00000003852	trub1	72	80.952	ENSAOCG00000017188	trub1	65	74.603	Amphiprion_ocellaris
ENSPKIG00000003852	trub1	72	80.952	ENSAPEG00000015209	trub1	65	74.603	Amphiprion_percula
ENSPKIG00000003852	trub1	83	72.959	ENSATEG00000023291	trub1	70	72.959	Anabas_testudineus
ENSPKIG00000003852	trub1	72	67.665	ENSAPLG00000006808	TRUB1	60	67.665	Anas_platyrhynchos
ENSPKIG00000003852	trub1	72	70.060	ENSACAG00000009282	TRUB1	61	70.060	Anolis_carolinensis
ENSPKIG00000003852	trub1	72	80.357	ENSACLG00000000823	trub1	60	80.357	Astatotilapia_calliptera
ENSPKIG00000003852	trub1	74	78.947	ENSAMXG00000015845	trub1	57	78.947	Astyanax_mexicanus
ENSPKIG00000003852	trub1	72	70.659	ENSCHIG00000020884	TRUB1	52	68.786	Capra_hircus
ENSPKIG00000003852	trub1	72	59.880	ENSCAPG00000017088	TRUB1	63	59.880	Cavia_aperea
ENSPKIG00000003852	trub1	72	72.455	ENSCPBG00000003051	TRUB1	58	72.455	Chrysemys_picta_bellii
ENSPKIG00000003852	trub1	72	69.048	ENSCGRG00001016772	-	55	69.461	Cricetulus_griseus_chok1gshd
ENSPKIG00000003852	trub1	72	69.461	ENSCGRG00000010806	Trub1	51	69.461	Cricetulus_griseus_crigri
ENSPKIG00000003852	trub1	74	72.515	ENSCSEG00000011261	trub1	55	72.515	Cynoglossus_semilaevis
ENSPKIG00000003852	trub1	72	77.976	ENSCVAG00000008791	trub1	52	77.976	Cyprinodon_variegatus
ENSPKIG00000003852	trub1	84	69.231	ENSDARG00000053805	trub1	75	69.231	Danio_rerio
ENSPKIG00000003852	trub1	74	76.744	ENSELUG00000000502	trub1	60	76.744	Esox_lucius
ENSPKIG00000003852	trub1	74	67.630	ENSFALG00000002232	TRUB1	67	67.630	Ficedula_albicollis
ENSPKIG00000003852	trub1	71	78.916	ENSFHEG00000004016	trub1	57	78.916	Fundulus_heteroclitus
ENSPKIG00000003852	trub1	72	67.665	ENSGALG00000009091	TRUB1	77	67.665	Gallus_gallus
ENSPKIG00000003852	trub1	70	78.528	ENSGAFG00000009193	trub1	64	78.528	Gambusia_affinis
ENSPKIG00000003852	trub1	74	75.706	ENSGACG00000015387	trub1	87	75.706	Gasterosteus_aculeatus
ENSPKIG00000003852	trub1	76	70.455	ENSGAGG00000009758	TRUB1	50	70.455	Gopherus_agassizii
ENSPKIG00000003852	trub1	72	79.762	ENSHBUG00000016787	trub1	60	79.762	Haplochromis_burtoni
ENSPKIG00000003852	trub1	77	72.626	ENSHCOG00000017877	trub1	74	72.626	Hippocampus_comes
ENSPKIG00000003852	trub1	76	77.841	ENSIPUG00000017559	trub1	62	77.841	Ictalurus_punctatus
ENSPKIG00000003852	trub1	72	69.006	ENSSTOG00000003641	TRUB1	52	69.006	Ictidomys_tridecemlineatus
ENSPKIG00000003852	trub1	92	59.346	ENSJJAG00000011800	Trub1	61	59.346	Jaculus_jaculus
ENSPKIG00000003852	trub1	75	73.770	ENSKMAG00000006232	trub1	66	73.770	Kryptolebias_marmoratus
ENSPKIG00000003852	trub1	88	68.137	ENSLBEG00000026722	trub1	77	68.137	Labrus_bergylta
ENSPKIG00000003852	trub1	80	66.842	ENSLACG00000014885	TRUB1	64	66.842	Latimeria_chalumnae
ENSPKIG00000003852	trub1	86	67.805	ENSLOCG00000012979	trub1	70	67.805	Lepisosteus_oculatus
ENSPKIG00000003852	trub1	72	80.357	ENSMZEG00005024095	trub1	60	80.357	Maylandia_zebra
ENSPKIG00000003852	trub1	72	67.665	ENSMGAG00000011135	TRUB1	58	67.665	Meleagris_gallopavo
ENSPKIG00000003852	trub1	74	68.208	ENSMOCG00000017759	Trub1	52	68.208	Microtus_ochrogaster
ENSPKIG00000003852	trub1	74	68.786	MGP_CAROLIEiJ_G0023100	Trub1	51	68.786	Mus_caroli
ENSPKIG00000003852	trub1	74	67.630	ENSMUSG00000025086	Trub1	51	67.630	Mus_musculus
ENSPKIG00000003852	trub1	74	67.630	MGP_PahariEiJ_G0014588	Trub1	51	67.630	Mus_pahari
ENSPKIG00000003852	trub1	74	68.208	MGP_SPRETEiJ_G0024021	Trub1	51	68.208	Mus_spretus
ENSPKIG00000003852	trub1	72	80.952	ENSNBRG00000023393	trub1	68	80.952	Neolamprologus_brichardi
ENSPKIG00000003852	trub1	74	65.896	ENSODEG00000010854	TRUB1	50	65.896	Octodon_degus
ENSPKIG00000003852	trub1	72	80.952	ENSONIG00000007249	trub1	61	80.952	Oreochromis_niloticus
ENSPKIG00000003852	trub1	91	58.685	ENSOANG00000001556	TRUB1	67	58.685	Ornithorhynchus_anatinus
ENSPKIG00000003852	trub1	74	76.023	ENSORLG00000029719	trub1	61	76.023	Oryzias_latipes
ENSPKIG00000003852	trub1	74	76.023	ENSORLG00020016767	trub1	60	76.023	Oryzias_latipes_hni
ENSPKIG00000003852	trub1	74	76.023	ENSORLG00015014728	trub1	61	76.023	Oryzias_latipes_hsok
ENSPKIG00000003852	trub1	72	75.000	ENSOMEG00000014556	trub1	59	75.000	Oryzias_melastigma
ENSPKIG00000003852	trub1	76	70.455	ENSPSIG00000012877	TRUB1	61	70.455	Pelodiscus_sinensis
ENSPKIG00000003852	trub1	74	76.023	ENSPMGG00000000075	trub1	62	76.023	Periophthalmus_magnuspinnatus
ENSPKIG00000003852	trub1	74	77.778	ENSPFOG00000009950	trub1	63	77.778	Poecilia_formosa
ENSPKIG00000003852	trub1	74	77.778	ENSPLAG00000013855	trub1	60	77.778	Poecilia_latipinna
ENSPKIG00000003852	trub1	74	77.778	ENSPMEG00000009064	trub1	62	77.778	Poecilia_mexicana
ENSPKIG00000003852	trub1	74	78.363	ENSPREG00000003343	trub1	62	78.363	Poecilia_reticulata
ENSPKIG00000003852	trub1	72	80.357	ENSPNYG00000018614	trub1	60	80.357	Pundamilia_nyererei
ENSPKIG00000003852	trub1	74	80.702	ENSPNAG00000006881	trub1	64	80.702	Pygocentrus_nattereri
ENSPKIG00000003852	trub1	74	67.630	ENSRNOG00000017321	Trub1	51	67.630	Rattus_norvegicus
ENSPKIG00000003852	trub1	72	69.822	ENSSHAG00000009346	TRUB1	57	69.822	Sarcophilus_harrisii
ENSPKIG00000003852	trub1	86	74.874	ENSSFOG00015022124	trub1	66	74.874	Scleropages_formosus
ENSPKIG00000003852	trub1	72	78.571	ENSSMAG00000001020	trub1	60	78.571	Scophthalmus_maximus
ENSPKIG00000003852	trub1	73	78.698	ENSSDUG00000016414	trub1	61	78.698	Seriola_dumerili
ENSPKIG00000003852	trub1	72	79.762	ENSSLDG00000015486	trub1	60	79.762	Seriola_lalandi_dorsalis
ENSPKIG00000003852	trub1	72	70.659	ENSSPUG00000001642	TRUB1	58	70.659	Sphenodon_punctatus
ENSPKIG00000003852	trub1	72	80.357	ENSSPAG00000001217	trub1	60	80.357	Stegastes_partitus
ENSPKIG00000003852	trub1	74	68.208	ENSSSCG00000010653	TRUB1	50	68.208	Sus_scrofa
ENSPKIG00000003852	trub1	74	69.364	ENSTGUG00000010971	TRUB1	60	71.257	Taeniopygia_guttata
ENSPKIG00000003852	trub1	72	56.287	ENSTBEG00000002880	TRUB1	65	56.287	Tupaia_belangeri
ENSPKIG00000003852	trub1	72	70.659	ENSUMAG00000002411	TRUB1	51	68.786	Ursus_maritimus
ENSPKIG00000003852	trub1	75	69.886	ENSXETG00000023828	trub1	64	69.886	Xenopus_tropicalis
ENSPKIG00000003852	trub1	70	79.012	ENSXCOG00000017847	trub1	65	79.012	Xiphophorus_couchianus
ENSPKIG00000003852	trub1	73	76.471	ENSXMAG00000014701	trub1	61	76.471	Xiphophorus_maculatus