EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000003974 (Gene tree)
Gene ID: 111845271
Gene Symbol: xrcc6
Alias: -
Full Name: X-ray repair cross complementing 6
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 6033 bases
Position: chrPGUA01000142.1:637541-643573
Accession: 111845271
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000018416	SAP	PF02037.27	8.2e-10	1	1
ENSPKIP00000018395	SAP	PF02037.27	9.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000036310	-	3057	-	ENSPKIP00000018395	610 (aa)	XP_023670349	UPI000CD66DA2
ENSPKIT00000036251	-	2895	-	ENSPKIP00000018416	556 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000003974's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000003974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000003974	xrcc6	99	60.526	ENSG00000196419	XRCC6	99	60.526	Homo_sapiens
ENSPKIG00000003974	xrcc6	99	71.217	ENSAPOG00000012704	xrcc6	99	71.382	Acanthochromis_polyacanthus
ENSPKIG00000003974	xrcc6	99	73.355	ENSACIG00000021277	xrcc6	99	73.355	Amphilophus_citrinellus
ENSPKIG00000003974	xrcc6	99	71.382	ENSAOCG00000021344	xrcc6	99	71.382	Amphiprion_ocellaris
ENSPKIG00000003974	xrcc6	99	71.217	ENSAPEG00000020712	xrcc6	99	71.217	Amphiprion_percula
ENSPKIG00000003974	xrcc6	99	71.757	ENSATEG00000007119	xrcc6	99	71.757	Anabas_testudineus
ENSPKIG00000003974	xrcc6	90	63.043	ENSAPLG00000004469	XRCC6	99	63.043	Anas_platyrhynchos
ENSPKIG00000003974	xrcc6	99	60.362	ENSANAG00000018684	XRCC6	98	61.581	Aotus_nancymaae
ENSPKIG00000003974	xrcc6	99	50.817	ENSANAG00000023445	-	99	50.654	Aotus_nancymaae
ENSPKIG00000003974	xrcc6	99	53.125	ENSANAG00000035230	-	99	52.796	Aotus_nancymaae
ENSPKIG00000003974	xrcc6	99	53.223	ENSANAG00000020017	-	91	61.463	Aotus_nancymaae
ENSPKIG00000003974	xrcc6	99	71.875	ENSACLG00000018608	xrcc6	99	71.875	Astatotilapia_calliptera
ENSPKIG00000003974	xrcc6	99	78.325	ENSAMXG00000007545	xrcc6	100	78.325	Astyanax_mexicanus
ENSPKIG00000003974	xrcc6	99	60.362	ENSCJAG00000045512	XRCC6	99	60.197	Callithrix_jacchus
ENSPKIG00000003974	xrcc6	100	59.609	ENSTSYG00000011348	XRCC6	99	59.772	Carlito_syrichta
ENSPKIG00000003974	xrcc6	99	57.213	ENSCCAG00000030041	-	94	57.072	Cebus_capucinus
ENSPKIG00000003974	xrcc6	99	53.274	ENSCCAG00000030468	-	99	64.455	Cebus_capucinus
ENSPKIG00000003974	xrcc6	99	49.091	ENSCCAG00000037663	-	96	49.091	Cebus_capucinus
ENSPKIG00000003974	xrcc6	99	49.264	ENSCCAG00000035711	-	99	49.100	Cebus_capucinus
ENSPKIG00000003974	xrcc6	99	60.526	ENSCATG00000042366	XRCC6	99	60.526	Cercocebus_atys
ENSPKIG00000003974	xrcc6	100	59.772	ENSCLAG00000016669	XRCC6	99	59.935	Chinchilla_lanigera
ENSPKIG00000003974	xrcc6	99	60.526	ENSCSAG00000005784	XRCC6	99	60.526	Chlorocebus_sabaeus
ENSPKIG00000003974	xrcc6	100	61.011	ENSCPBG00000020535	XRCC6	99	61.011	Chrysemys_picta_bellii
ENSPKIG00000003974	xrcc6	98	35.537	ENSCING00000000633	-	96	35.823	Ciona_intestinalis
ENSPKIG00000003974	xrcc6	99	60.526	ENSCANG00000031032	XRCC6	99	60.526	Colobus_angolensis_palliatus
ENSPKIG00000003974	xrcc6	100	54.575	ENSCGRG00001019029	Xrcc6	99	54.575	Cricetulus_griseus_chok1gshd
ENSPKIG00000003974	xrcc6	100	60.458	ENSCGRG00000001528	Xrcc6	99	60.458	Cricetulus_griseus_crigri
ENSPKIG00000003974	xrcc6	99	67.270	ENSCSEG00000020434	xrcc6	99	67.270	Cynoglossus_semilaevis
ENSPKIG00000003974	xrcc6	99	70.888	ENSCVAG00000002189	xrcc6	99	70.888	Cyprinodon_variegatus
ENSPKIG00000003974	xrcc6	100	74.141	ENSDARG00000071551	xrcc6	100	74.141	Danio_rerio
ENSPKIG00000003974	xrcc6	57	70.455	ENSETEG00000015333	-	67	57.073	Echinops_telfairi
ENSPKIG00000003974	xrcc6	100	57.912	ENSEASG00005001514	XRCC6	99	57.912	Equus_asinus_asinus
ENSPKIG00000003974	xrcc6	100	57.749	ENSECAG00000017563	XRCC6	99	57.848	Equus_caballus
ENSPKIG00000003974	xrcc6	99	71.593	ENSELUG00000020301	xrcc6	99	71.593	Esox_lucius
ENSPKIG00000003974	xrcc6	99	60.556	ENSFALG00000011908	XRCC6	96	60.556	Ficedula_albicollis
ENSPKIG00000003974	xrcc6	99	72.020	ENSFHEG00000016833	xrcc6	99	72.020	Fundulus_heteroclitus
ENSPKIG00000003974	xrcc6	99	63.355	ENSGMOG00000013524	xrcc6	100	63.355	Gadus_morhua
ENSPKIG00000003974	xrcc6	99	60.940	ENSGALG00000011932	XRCC6	99	61.102	Gallus_gallus
ENSPKIG00000003974	xrcc6	99	69.737	ENSGAFG00000008130	xrcc6	99	69.737	Gambusia_affinis
ENSPKIG00000003974	xrcc6	100	69.106	ENSGACG00000004868	xrcc6	99	68.618	Gasterosteus_aculeatus
ENSPKIG00000003974	xrcc6	100	60.359	ENSGAGG00000017518	XRCC6	99	60.359	Gopherus_agassizii
ENSPKIG00000003974	xrcc6	99	60.526	ENSGGOG00000015885	XRCC6	99	60.526	Gorilla_gorilla
ENSPKIG00000003974	xrcc6	92	72.340	ENSHBUG00000023281	xrcc6	99	72.340	Haplochromis_burtoni
ENSPKIG00000003974	xrcc6	100	58.564	ENSHGLG00000018078	XRCC6	99	58.564	Heterocephalus_glaber_female
ENSPKIG00000003974	xrcc6	100	58.564	ENSHGLG00100011264	XRCC6	99	58.564	Heterocephalus_glaber_male
ENSPKIG00000003974	xrcc6	99	67.652	ENSHCOG00000009821	xrcc6	99	67.652	Hippocampus_comes
ENSPKIG00000003974	xrcc6	100	77.049	ENSIPUG00000000767	xrcc6	100	77.049	Ictalurus_punctatus
ENSPKIG00000003974	xrcc6	100	59.380	ENSSTOG00000009490	XRCC6	99	59.869	Ictidomys_tridecemlineatus
ENSPKIG00000003974	xrcc6	100	53.583	ENSJJAG00000017136	Xrcc6	99	54.812	Jaculus_jaculus
ENSPKIG00000003974	xrcc6	99	71.217	ENSKMAG00000002141	xrcc6	99	71.217	Kryptolebias_marmoratus
ENSPKIG00000003974	xrcc6	99	70.608	ENSLBEG00000002691	xrcc6	99	70.608	Labrus_bergylta
ENSPKIG00000003974	xrcc6	87	66.990	ENSLOCG00000011533	xrcc6	99	66.990	Lepisosteus_oculatus
ENSPKIG00000003974	xrcc6	99	60.526	ENSMFAG00000003352	XRCC6	99	60.526	Macaca_fascicularis
ENSPKIG00000003974	xrcc6	99	60.526	ENSMMUG00000001856	XRCC6	99	60.526	Macaca_mulatta
ENSPKIG00000003974	xrcc6	99	60.526	ENSMNEG00000035076	XRCC6	99	60.526	Macaca_nemestrina
ENSPKIG00000003974	xrcc6	99	60.526	ENSMLEG00000019869	XRCC6	99	60.526	Mandrillus_leucophaeus
ENSPKIG00000003974	xrcc6	96	70.598	ENSMAMG00000003405	xrcc6	97	70.598	Mastacembelus_armatus
ENSPKIG00000003974	xrcc6	99	70.492	ENSMAMG00000003368	xrcc6	99	70.492	Mastacembelus_armatus
ENSPKIG00000003974	xrcc6	99	71.875	ENSMZEG00005028080	xrcc6	99	71.875	Maylandia_zebra
ENSPKIG00000003974	xrcc6	99	61.264	ENSMGAG00000012146	XRCC6	99	61.426	Meleagris_gallopavo
ENSPKIG00000003974	xrcc6	100	60.131	ENSMAUG00000017340	Xrcc6	100	60.131	Mesocricetus_auratus
ENSPKIG00000003974	xrcc6	100	60.948	ENSMOCG00000015717	Xrcc6	100	61.111	Microtus_ochrogaster
ENSPKIG00000003974	xrcc6	99	68.473	ENSMMOG00000003536	xrcc6	99	68.473	Mola_mola
ENSPKIG00000003974	xrcc6	99	71.593	ENSMALG00000013912	xrcc6	95	71.593	Monopterus_albus
ENSPKIG00000003974	xrcc6	100	55.719	MGP_CAROLIEiJ_G0020067	Xrcc6	99	55.719	Mus_caroli
ENSPKIG00000003974	xrcc6	100	60.294	ENSMUSG00000022471	Xrcc6	99	63.774	Mus_musculus
ENSPKIG00000003974	xrcc6	100	60.948	MGP_PahariEiJ_G0020069	Xrcc6	99	61.438	Mus_pahari
ENSPKIG00000003974	xrcc6	96	61.775	MGP_SPRETEiJ_G0020967	Xrcc6	99	61.775	Mus_spretus
ENSPKIG00000003974	xrcc6	100	59.804	ENSNGAG00000013750	Xrcc6	99	59.804	Nannospalax_galili
ENSPKIG00000003974	xrcc6	99	72.039	ENSNBRG00000004125	xrcc6	99	72.039	Neolamprologus_brichardi
ENSPKIG00000003974	xrcc6	95	60.345	ENSOPRG00000002386	XRCC6	99	60.345	Ochotona_princeps
ENSPKIG00000003974	xrcc6	100	58.306	ENSODEG00000015847	XRCC6	99	58.632	Octodon_degus
ENSPKIG00000003974	xrcc6	99	72.039	ENSONIG00000019715	xrcc6	99	72.039	Oreochromis_niloticus
ENSPKIG00000003974	xrcc6	68	63.158	ENSOANG00000011328	XRCC6	99	63.158	Ornithorhynchus_anatinus
ENSPKIG00000003974	xrcc6	99	60.132	ENSOCUG00000006948	XRCC6	99	60.132	Oryctolagus_cuniculus
ENSPKIG00000003974	xrcc6	99	72.906	ENSORLG00020007820	xrcc6	99	72.906	Oryzias_latipes_hni
ENSPKIG00000003974	xrcc6	99	72.906	ENSORLG00015006406	xrcc6	99	72.906	Oryzias_latipes_hsok
ENSPKIG00000003974	xrcc6	99	72.250	ENSOMEG00000008998	xrcc6	99	72.250	Oryzias_melastigma
ENSPKIG00000003974	xrcc6	100	59.380	ENSOGAG00000008821	XRCC6	100	59.380	Otolemur_garnettii
ENSPKIG00000003974	xrcc6	91	62.534	ENSPPAG00000037167	XRCC6	99	62.534	Pan_paniscus
ENSPKIG00000003974	xrcc6	99	60.526	ENSPTRG00000022548	XRCC6	98	61.552	Pan_troglodytes
ENSPKIG00000003974	xrcc6	99	60.526	ENSPTRG00000045824	XRCC6	98	61.552	Pan_troglodytes
ENSPKIG00000003974	xrcc6	99	60.362	ENSPANG00000001252	XRCC6	97	63.596	Papio_anubis
ENSPKIG00000003974	xrcc6	99	69.601	ENSPMGG00000014220	xrcc6	100	70.266	Periophthalmus_magnuspinnatus
ENSPKIG00000003974	xrcc6	100	59.903	ENSPEMG00000023446	Xrcc6	99	60.294	Peromyscus_maniculatus_bairdii
ENSPKIG00000003974	xrcc6	99	60.461	ENSPCIG00000026409	XRCC6	99	60.461	Phascolarctos_cinereus
ENSPKIG00000003974	xrcc6	99	71.382	ENSPFOG00000017173	xrcc6	99	71.382	Poecilia_formosa
ENSPKIG00000003974	xrcc6	99	70.888	ENSPLAG00000000562	xrcc6	99	70.888	Poecilia_latipinna
ENSPKIG00000003974	xrcc6	99	71.382	ENSPMEG00000018478	xrcc6	99	71.382	Poecilia_mexicana
ENSPKIG00000003974	xrcc6	99	71.475	ENSPREG00000020957	xrcc6	93	71.475	Poecilia_reticulata
ENSPKIG00000003974	xrcc6	99	59.928	ENSPPYG00000011876	XRCC6	99	59.928	Pongo_abelii
ENSPKIG00000003974	xrcc6	100	57.516	ENSPVAG00000001168	XRCC6	99	58.007	Pteropus_vampyrus
ENSPKIG00000003974	xrcc6	99	71.546	ENSPNYG00000003815	xrcc6	99	68.232	Pundamilia_nyererei
ENSPKIG00000003974	xrcc6	100	60.131	ENSRNOG00000006392	Xrcc6	99	60.458	Rattus_norvegicus
ENSPKIG00000003974	xrcc6	99	56.414	ENSRBIG00000039794	XRCC6	98	57.686	Rhinopithecus_bieti
ENSPKIG00000003974	xrcc6	99	60.526	ENSRROG00000030297	XRCC6	99	60.526	Rhinopithecus_roxellana
ENSPKIG00000003974	xrcc6	66	55.309	ENSSBOG00000024724	-	98	55.309	Saimiri_boliviensis_boliviensis
ENSPKIG00000003974	xrcc6	100	58.306	ENSSHAG00000010790	XRCC6	99	58.306	Sarcophilus_harrisii
ENSPKIG00000003974	xrcc6	100	81.311	ENSSFOG00015014409	xrcc6	100	81.311	Scleropages_formosus
ENSPKIG00000003974	xrcc6	99	72.533	ENSSMAG00000006496	xrcc6	99	72.533	Scophthalmus_maximus
ENSPKIG00000003974	xrcc6	99	71.382	ENSSDUG00000007542	xrcc6	99	71.382	Seriola_dumerili
ENSPKIG00000003974	xrcc6	99	71.217	ENSSLDG00000009974	xrcc6	99	71.217	Seriola_lalandi_dorsalis
ENSPKIG00000003974	xrcc6	100	60.359	ENSSPUG00000012086	XRCC6	99	60.522	Sphenodon_punctatus
ENSPKIG00000003974	xrcc6	99	71.593	ENSSPAG00000015199	xrcc6	99	71.593	Stegastes_partitus
ENSPKIG00000003974	xrcc6	96	61.460	ENSTGUG00000009852	-	95	61.460	Taeniopygia_guttata
ENSPKIG00000003974	xrcc6	99	71.717	ENSTRUG00000017070	xrcc6	99	69.737	Takifugu_rubripes
ENSPKIG00000003974	xrcc6	96	68.644	ENSTNIG00000012947	xrcc6	99	68.644	Tetraodon_nigroviridis
ENSPKIG00000003974	xrcc6	95	55.517	ENSTBEG00000011736	XRCC6	99	55.517	Tupaia_belangeri
ENSPKIG00000003974	xrcc6	100	49.429	ENSTTRG00000006749	XRCC6	99	49.592	Tursiops_truncatus
ENSPKIG00000003974	xrcc6	99	71.546	ENSXMAG00000009691	xrcc6	99	71.546	Xiphophorus_maculatus