EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000004328 (Gene tree)
Gene ID: 111849473
Gene Symbol: r3hdm1
Alias: -
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 36050 bases
Position: chrPGUA01000193.1:824696-860745
Accession: 111849473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000019014	R3H	PF01424.22	7.5e-13	1	1
ENSPKIP00000019297	R3H	PF01424.22	8.2e-13	1	1
ENSPKIP00000019223	R3H	PF01424.22	9e-13	1	1
ENSPKIP00000019132	R3H	PF01424.22	9.3e-13	1	1
ENSPKIP00000018964	R3H	PF01424.22	9.5e-13	1	1
ENSPKIP00000019066	R3H	PF01424.22	9.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000036067	-	5812	-	ENSPKIP00000019223	1112 (aa)	-	-
ENSPKIT00000035975	-	5902	-	ENSPKIP00000019132	1142 (aa)	-	-
ENSPKIT00000035909	-	5944	-	ENSPKIP00000019066	1156 (aa)	XP_023678116	UPI000CD674C9
ENSPKIT00000035857	-	5273	-	ENSPKIP00000019014	988 (aa)	-	-
ENSPKIT00000036144	-	5677	-	ENSPKIP00000019297	1067 (aa)	-	-
ENSPKIT00000035806	-	5777	-	ENSPKIP00000018964	1156 (aa)	XP_023678116	UPI000CD674C9

Gene Model

Click here to download ENSPKIG00000004328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000004328's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000004328	r3hdm1	81	62.941	ENSPKIG00000003171	r3hdm2	92	57.971
ENSPKIG00000004328	r3hdm1	57	59.603	ENSPKIG00000010891	ARPP21	84	56.430

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000004328	r3hdm1	91	76.677	ENSG00000048991	R3HDM1	94	76.358	Homo_sapiens
ENSPKIG00000004328	r3hdm1	78	72.697	ENSAPOG00000020850	r3hdm1	85	73.684	Acanthochromis_polyacanthus
ENSPKIG00000004328	r3hdm1	91	76.508	ENSAMEG00000014886	R3HDM1	84	76.266	Ailuropoda_melanoleuca
ENSPKIG00000004328	r3hdm1	78	72.697	ENSAOCG00000005192	r3hdm1	85	73.684	Amphiprion_ocellaris
ENSPKIG00000004328	r3hdm1	83	64.607	ENSAPEG00000016108	r3hdm1	88	73.597	Amphiprion_percula
ENSPKIG00000004328	r3hdm1	83	65.449	ENSATEG00000000232	r3hdm1	89	71.207	Anabas_testudineus
ENSPKIG00000004328	r3hdm1	96	59.754	ENSAPLG00000015231	R3HDM1	92	68.148	Anas_platyrhynchos
ENSPKIG00000004328	r3hdm1	96	69.059	ENSACAG00000001676	R3HDM1	92	68.889	Anolis_carolinensis
ENSPKIG00000004328	r3hdm1	91	76.677	ENSANAG00000035334	R3HDM1	94	76.358	Aotus_nancymaae
ENSPKIG00000004328	r3hdm1	83	65.449	ENSACLG00000027282	r3hdm1	93	66.292	Astatotilapia_calliptera
ENSPKIG00000004328	r3hdm1	91	79.153	ENSAMXG00000003536	r3hdm1	93	76.945	Astyanax_mexicanus
ENSPKIG00000004328	r3hdm1	65	36.386	ENSAMXG00000020587	arpp21	84	56.098	Astyanax_mexicanus
ENSPKIG00000004328	r3hdm1	96	70.426	ENSAMXG00000012861	R3HDM1	99	66.960	Astyanax_mexicanus
ENSPKIG00000004328	r3hdm1	91	75.873	ENSBTAG00000013302	R3HDM1	92	67.830	Bos_taurus
ENSPKIG00000004328	r3hdm1	91	76.677	ENSCJAG00000011718	R3HDM1	94	76.358	Callithrix_jacchus
ENSPKIG00000004328	r3hdm1	91	76.508	ENSCAFG00000005075	R3HDM1	84	76.266	Canis_familiaris
ENSPKIG00000004328	r3hdm1	91	76.508	ENSCAFG00020016119	R3HDM1	84	76.266	Canis_lupus_dingo
ENSPKIG00000004328	r3hdm1	91	76.190	ENSCHIG00000020851	R3HDM1	84	75.949	Capra_hircus
ENSPKIG00000004328	r3hdm1	91	72.381	ENSCPOG00000012784	R3HDM1	97	62.676	Cavia_porcellus
ENSPKIG00000004328	r3hdm1	91	76.358	ENSCCAG00000027199	R3HDM1	94	76.038	Cebus_capucinus
ENSPKIG00000004328	r3hdm1	91	76.358	ENSCATG00000023642	R3HDM1	88	76.115	Cercocebus_atys
ENSPKIG00000004328	r3hdm1	91	75.238	ENSCLAG00000007962	R3HDM1	97	65.493	Chinchilla_lanigera
ENSPKIG00000004328	r3hdm1	91	76.190	ENSCSAG00000016356	R3HDM1	84	75.949	Chlorocebus_sabaeus
ENSPKIG00000004328	r3hdm1	77	78.788	ENSCHOG00000013638	R3HDM1	73	79.412	Choloepus_hoffmanni
ENSPKIG00000004328	r3hdm1	87	80.515	ENSCPBG00000009645	R3HDM1	100	62.756	Chrysemys_picta_bellii
ENSPKIG00000004328	r3hdm1	91	76.508	ENSCANG00000034748	R3HDM1	94	76.358	Colobus_angolensis_palliatus
ENSPKIG00000004328	r3hdm1	91	74.921	ENSCGRG00001012357	R3hdm1	90	66.173	Cricetulus_griseus_chok1gshd
ENSPKIG00000004328	r3hdm1	91	74.921	ENSCGRG00000012080	R3hdm1	97	66.549	Cricetulus_griseus_crigri
ENSPKIG00000004328	r3hdm1	78	68.750	ENSCSEG00000008944	r3hdm1	88	66.172	Cynoglossus_semilaevis
ENSPKIG00000004328	r3hdm1	78	71.617	ENSCVAG00000007582	r3hdm1	89	69.091	Cyprinodon_variegatus
ENSPKIG00000004328	r3hdm1	60	37.209	ENSDARG00000061081	arpp21	89	37.573	Danio_rerio
ENSPKIG00000004328	r3hdm1	87	77.419	ENSDNOG00000000771	R3HDM1	80	77.500	Dasypus_novemcinctus
ENSPKIG00000004328	r3hdm1	87	75.472	ENSETEG00000013606	R3HDM1	66	75.710	Echinops_telfairi
ENSPKIG00000004328	r3hdm1	63	38.292	ENSEBUG00000014746	arpp21	98	39.970	Eptatretus_burgeri
ENSPKIG00000004328	r3hdm1	91	76.508	ENSEASG00005007392	R3HDM1	87	76.433	Equus_asinus_asinus
ENSPKIG00000004328	r3hdm1	91	76.508	ENSECAG00000019114	R3HDM1	86	76.433	Equus_caballus
ENSPKIG00000004328	r3hdm1	70	64.706	ENSEEUG00000012589	R3HDM1	68	64.410	Erinaceus_europaeus
ENSPKIG00000004328	r3hdm1	86	83.588	ENSELUG00000014413	r3hdm1	86	83.588	Esox_lucius
ENSPKIG00000004328	r3hdm1	87	81.319	ENSELUG00000004909	R3HDM1	85	81.091	Esox_lucius
ENSPKIG00000004328	r3hdm1	91	76.508	ENSFCAG00000027113	R3HDM1	91	76.190	Felis_catus
ENSPKIG00000004328	r3hdm1	87	59.574	ENSFALG00000013731	R3HDM1	85	66.501	Ficedula_albicollis
ENSPKIG00000004328	r3hdm1	91	76.190	ENSFDAG00000016478	R3HDM1	97	66.901	Fukomys_damarensis
ENSPKIG00000004328	r3hdm1	78	72.222	ENSFHEG00000018713	r3hdm1	84	73.203	Fundulus_heteroclitus
ENSPKIG00000004328	r3hdm1	58	85.057	ENSGMOG00000006042	-	77	70.103	Gadus_morhua
ENSPKIG00000004328	r3hdm1	91	61.697	ENSGALG00000012246	R3HDM1	99	71.845	Gallus_gallus
ENSPKIG00000004328	r3hdm1	80	70.370	ENSGAFG00000006203	r3hdm1	91	71.296	Gambusia_affinis
ENSPKIG00000004328	r3hdm1	82	71.242	ENSGACG00000014925	r3hdm1	91	69.767	Gasterosteus_aculeatus
ENSPKIG00000004328	r3hdm1	91	75.556	ENSGAGG00000007840	R3HDM1	100	63.333	Gopherus_agassizii
ENSPKIG00000004328	r3hdm1	91	76.677	ENSGGOG00000008156	R3HDM1	94	76.358	Gorilla_gorilla
ENSPKIG00000004328	r3hdm1	91	76.190	ENSHGLG00000015718	R3HDM1	97	66.549	Heterocephalus_glaber_female
ENSPKIG00000004328	r3hdm1	91	76.190	ENSHGLG00100003184	-	97	66.549	Heterocephalus_glaber_male
ENSPKIG00000004328	r3hdm1	89	46.282	ENSHGLG00100015374	-	94	45.322	Heterocephalus_glaber_male
ENSPKIG00000004328	r3hdm1	82	61.648	ENSHCOG00000013366	r3hdm1	85	69.536	Hippocampus_comes
ENSPKIG00000004328	r3hdm1	61	34.443	ENSIPUG00000020552	arpp21	89	35.166	Ictalurus_punctatus
ENSPKIG00000004328	r3hdm1	93	70.783	ENSIPUG00000013629	r3hdm1	95	72.785	Ictalurus_punctatus
ENSPKIG00000004328	r3hdm1	83	75.556	ENSIPUG00000001676	R3HDM1	99	66.056	Ictalurus_punctatus
ENSPKIG00000004328	r3hdm1	91	76.190	ENSSTOG00000007572	R3HDM1	97	66.901	Ictidomys_tridecemlineatus
ENSPKIG00000004328	r3hdm1	91	78.135	ENSLACG00000005334	R3HDM1	92	75.833	Latimeria_chalumnae
ENSPKIG00000004328	r3hdm1	95	77.387	ENSLOCG00000001641	r3hdm1	94	76.790	Lepisosteus_oculatus
ENSPKIG00000004328	r3hdm1	91	76.508	ENSLAFG00000009065	R3HDM1	84	76.266	Loxodonta_africana
ENSPKIG00000004328	r3hdm1	91	76.677	ENSMFAG00000030331	R3HDM1	88	76.433	Macaca_fascicularis
ENSPKIG00000004328	r3hdm1	91	76.677	ENSMMUG00000009844	R3HDM1	88	76.433	Macaca_mulatta
ENSPKIG00000004328	r3hdm1	91	76.677	ENSMNEG00000027793	R3HDM1	88	76.433	Macaca_nemestrina
ENSPKIG00000004328	r3hdm1	91	76.677	ENSMLEG00000043189	R3HDM1	88	76.433	Mandrillus_leucophaeus
ENSPKIG00000004328	r3hdm1	78	73.355	ENSMAMG00000004532	r3hdm1	85	74.342	Mastacembelus_armatus
ENSPKIG00000004328	r3hdm1	78	72.368	ENSMZEG00005003157	r3hdm1	89	73.355	Maylandia_zebra
ENSPKIG00000004328	r3hdm1	96	58.772	ENSMGAG00000012461	R3HDM1	99	58.720	Meleagris_gallopavo
ENSPKIG00000004328	r3hdm1	91	75.238	ENSMAUG00000010315	R3hdm1	97	66.549	Mesocricetus_auratus
ENSPKIG00000004328	r3hdm1	90	57.730	ENSMICG00000042655	-	98	57.497	Microcebus_murinus
ENSPKIG00000004328	r3hdm1	91	76.677	ENSMICG00000005900	-	89	75.701	Microcebus_murinus
ENSPKIG00000004328	r3hdm1	80	73.684	ENSMODG00000000923	R3HDM1	96	58.784	Monodelphis_domestica
ENSPKIG00000004328	r3hdm1	90	72.368	ENSMALG00000009000	r3hdm1	88	70.231	Monopterus_albus
ENSPKIG00000004328	r3hdm1	91	74.921	MGP_CAROLIEiJ_G0014543	R3hdm1	97	66.549	Mus_caroli
ENSPKIG00000004328	r3hdm1	91	74.921	ENSMUSG00000056211	R3hdm1	97	66.549	Mus_musculus
ENSPKIG00000004328	r3hdm1	91	74.921	MGP_PahariEiJ_G0027779	R3hdm1	97	66.549	Mus_pahari
ENSPKIG00000004328	r3hdm1	91	74.921	MGP_SPRETEiJ_G0015350	R3hdm1	97	66.549	Mus_spretus
ENSPKIG00000004328	r3hdm1	91	76.508	ENSMPUG00000002412	R3HDM1	84	76.266	Mustela_putorius_furo
ENSPKIG00000004328	r3hdm1	91	76.433	ENSMLUG00000013824	R3HDM1	84	75.949	Myotis_lucifugus
ENSPKIG00000004328	r3hdm1	91	76.677	ENSNLEG00000008622	R3HDM1	94	76.358	Nomascus_leucogenys
ENSPKIG00000004328	r3hdm1	81	59.761	ENSMEUG00000011784	R3HDM1	93	60.159	Notamacropus_eugenii
ENSPKIG00000004328	r3hdm1	91	75.873	ENSODEG00000008607	R3HDM1	97	66.197	Octodon_degus
ENSPKIG00000004328	r3hdm1	90	67.385	ENSONIG00000012017	r3hdm1	89	66.667	Oreochromis_niloticus
ENSPKIG00000004328	r3hdm1	91	75.719	ENSOANG00000007987	R3HDM1	92	66.830	Ornithorhynchus_anatinus
ENSPKIG00000004328	r3hdm1	79	75.399	ENSOCUG00000017366	R3HDM1	89	66.173	Oryctolagus_cuniculus
ENSPKIG00000004328	r3hdm1	78	70.199	ENSORLG00000004297	r3hdm1	87	70.358	Oryzias_latipes
ENSPKIG00000004328	r3hdm1	78	70.530	ENSORLG00015017355	r3hdm1	87	71.523	Oryzias_latipes_hsok
ENSPKIG00000004328	r3hdm1	96	55.826	ENSOGAG00000003136	R3HDM1	84	76.266	Otolemur_garnettii
ENSPKIG00000004328	r3hdm1	91	76.190	ENSOARG00000010788	R3HDM1	84	75.949	Ovis_aries
ENSPKIG00000004328	r3hdm1	91	76.677	ENSPPAG00000027858	R3HDM1	94	76.358	Pan_paniscus
ENSPKIG00000004328	r3hdm1	91	76.190	ENSPPRG00000002626	R3HDM1	94	76.038	Panthera_pardus
ENSPKIG00000004328	r3hdm1	91	76.508	ENSPTIG00000016581	R3HDM1	94	76.358	Panthera_tigris_altaica
ENSPKIG00000004328	r3hdm1	91	76.677	ENSPTRG00000012494	R3HDM1	94	76.358	Pan_troglodytes
ENSPKIG00000004328	r3hdm1	91	76.677	ENSPANG00000026448	R3HDM1	88	76.433	Papio_anubis
ENSPKIG00000004328	r3hdm1	96	68.250	ENSPSIG00000012915	R3HDM1	91	68.080	Pelodiscus_sinensis
ENSPKIG00000004328	r3hdm1	91	74.921	ENSPEMG00000015187	R3hdm1	97	66.197	Peromyscus_maniculatus_bairdii
ENSPKIG00000004328	r3hdm1	81	59.621	ENSPMAG00000003369	-	88	60.377	Petromyzon_marinus
ENSPKIG00000004328	r3hdm1	91	76.433	ENSPCIG00000002491	R3HDM1	99	66.995	Phascolarctos_cinereus
ENSPKIG00000004328	r3hdm1	78	72.757	ENSPFOG00000015036	r3hdm1	89	70.201	Poecilia_formosa
ENSPKIG00000004328	r3hdm1	80	69.632	ENSPLAG00000018042	r3hdm1	90	70.552	Poecilia_latipinna
ENSPKIG00000004328	r3hdm1	80	69.632	ENSPMEG00000023947	r3hdm1	90	70.552	Poecilia_mexicana
ENSPKIG00000004328	r3hdm1	78	73.770	ENSPREG00000007902	r3hdm1	88	74.754	Poecilia_reticulata
ENSPKIG00000004328	r3hdm1	91	75.000	ENSPPYG00000012815	R3HDM1	84	74.763	Pongo_abelii
ENSPKIG00000004328	r3hdm1	82	76.170	ENSPCAG00000006208	R3HDM1	76	75.847	Procavia_capensis
ENSPKIG00000004328	r3hdm1	96	53.946	ENSPCOG00000012698	R3HDM1	87	79.705	Propithecus_coquereli
ENSPKIG00000004328	r3hdm1	91	68.254	ENSPVAG00000006098	R3HDM1	84	68.038	Pteropus_vampyrus
ENSPKIG00000004328	r3hdm1	64	35.602	ENSPNAG00000004162	arpp21	91	37.042	Pygocentrus_nattereri
ENSPKIG00000004328	r3hdm1	92	64.257	ENSPNAG00000013952	r3hdm1	92	78.635	Pygocentrus_nattereri
ENSPKIG00000004328	r3hdm1	90	68.750	ENSPNAG00000005436	R3HDM1	99	68.092	Pygocentrus_nattereri
ENSPKIG00000004328	r3hdm1	91	74.603	ENSRNOG00000004099	R3hdm1	94	65.926	Rattus_norvegicus
ENSPKIG00000004328	r3hdm1	87	80.515	ENSRBIG00000033317	R3HDM1	100	80.147	Rhinopithecus_bieti
ENSPKIG00000004328	r3hdm1	91	76.677	ENSRROG00000034534	R3HDM1	94	76.358	Rhinopithecus_roxellana
ENSPKIG00000004328	r3hdm1	91	76.677	ENSSBOG00000020389	R3HDM1	94	76.358	Saimiri_boliviensis_boliviensis
ENSPKIG00000004328	r3hdm1	91	76.433	ENSSHAG00000016999	R3HDM1	91	68.785	Sarcophilus_harrisii
ENSPKIG00000004328	r3hdm1	96	73.434	ENSSFOG00015014134	r3hdm1	99	80.201	Scleropages_formosus
ENSPKIG00000004328	r3hdm1	95	67.424	ENSSFOG00015019851	-	99	67.225	Scleropages_formosus
ENSPKIG00000004328	r3hdm1	89	72.277	ENSSMAG00000001669	r3hdm1	89	73.179	Scophthalmus_maximus
ENSPKIG00000004328	r3hdm1	78	72.697	ENSSDUG00000010749	r3hdm1	90	65.826	Seriola_dumerili
ENSPKIG00000004328	r3hdm1	89	73.026	ENSSLDG00000004499	r3hdm1	82	74.013	Seriola_lalandi_dorsalis
ENSPKIG00000004328	r3hdm1	62	64.115	ENSSARG00000000352	-	63	58.537	Sorex_araneus
ENSPKIG00000004328	r3hdm1	96	58.932	ENSSPUG00000004167	R3HDM1	99	58.757	Sphenodon_punctatus
ENSPKIG00000004328	r3hdm1	78	73.026	ENSSPAG00000004648	r3hdm1	83	74.013	Stegastes_partitus
ENSPKIG00000004328	r3hdm1	91	76.190	ENSSSCG00000015692	R3HDM1	96	68.278	Sus_scrofa
ENSPKIG00000004328	r3hdm1	96	58.076	ENSTGUG00000011750	R3HDM1	83	74.522	Taeniopygia_guttata
ENSPKIG00000004328	r3hdm1	78	71.704	ENSTRUG00000011654	r3hdm1	86	72.669	Takifugu_rubripes
ENSPKIG00000004328	r3hdm1	78	70.192	ENSTNIG00000010362	r3hdm1	86	71.154	Tetraodon_nigroviridis
ENSPKIG00000004328	r3hdm1	91	76.923	ENSTTRG00000003935	R3HDM1	83	76.677	Tursiops_truncatus
ENSPKIG00000004328	r3hdm1	63	69.944	ENSUAMG00000024806	R3HDM1	86	76.358	Ursus_americanus
ENSPKIG00000004328	r3hdm1	95	58.240	ENSUMAG00000005552	R3HDM1	94	76.358	Ursus_maritimus
ENSPKIG00000004328	r3hdm1	87	76.923	ENSVPAG00000007333	R3HDM1	80	76.642	Vicugna_pacos
ENSPKIG00000004328	r3hdm1	91	76.508	ENSVVUG00000006457	R3HDM1	94	76.358	Vulpes_vulpes
ENSPKIG00000004328	r3hdm1	83	69.429	ENSXETG00000019330	r3hdm1	85	67.877	Xenopus_tropicalis
ENSPKIG00000004328	r3hdm1	61	71.987	ENSXCOG00000017448	r3hdm1	80	72.964	Xiphophorus_couchianus
ENSPKIG00000004328	r3hdm1	78	72.787	ENSXMAG00000007885	r3hdm1	87	70.571	Xiphophorus_maculatus