EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000004422 (Gene tree)
Gene ID: 111845674
Gene Symbol: upf3a
Alias: -
Full Name: regulator of nonsense transcripts 3A-like
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 11411 bases
Position: chrPGUA01000001.1:2900256-2911666
Accession: 111845674
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000019211	Smg4_UPF3	PF03467.15	1.5e-52	1	1
ENSPKIP00000019122	Smg4_UPF3	PF03467.15	1.6e-52	1	1
ENSPKIP00000019145	Smg4_UPF3	PF03467.15	2.7e-51	1	1
ENSPKIP00000019175	Smg4_UPF3	PF03467.15	2.7e-51	1	1
ENSPKIP00000019266	Smg4_UPF3	PF03467.15	1.2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000035965	-	3338	-	ENSPKIP00000019122	485 (aa)	XP_023671069	UPI000CD61BEA
ENSPKIT00000036110	-	1350	-	ENSPKIP00000019266	449 (aa)	-	-
ENSPKIT00000035988	-	3080	-	ENSPKIP00000019145	445 (aa)	-	-
ENSPKIT00000036018	-	2866	-	ENSPKIP00000019175	445 (aa)	-	-
ENSPKIT00000036055	-	5068	-	ENSPKIP00000019211	467 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000004422's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03013	RNA transport	KEGG
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000004422's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000004422	upf3a	98	47.033	ENSPKIG00000019226	upf3b	93	63.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000004422	upf3a	91	56.145	ENSG00000169062	UPF3A	96	52.675	Homo_sapiens
ENSPKIG00000004422	upf3a	94	72.826	ENSAPOG00000013484	upf3a	93	72.826	Acanthochromis_polyacanthus
ENSPKIG00000004422	upf3a	92	56.190	ENSAMEG00000004259	UPF3A	84	58.442	Ailuropoda_melanoleuca
ENSPKIG00000004422	upf3a	99	71.370	ENSACIG00000020468	upf3a	99	71.370	Amphilophus_citrinellus
ENSPKIG00000004422	upf3a	60	59.498	ENSAOCG00000000706	upf3b	91	47.661	Amphiprion_ocellaris
ENSPKIG00000004422	upf3a	98	70.833	ENSAOCG00000020784	upf3a	88	77.536	Amphiprion_ocellaris
ENSPKIG00000004422	upf3a	98	70.833	ENSAPEG00000003519	upf3a	88	77.536	Amphiprion_percula
ENSPKIG00000004422	upf3a	94	47.321	ENSATEG00000018742	upf3b	90	48.132	Anabas_testudineus
ENSPKIG00000004422	upf3a	100	70.101	ENSATEG00000005843	upf3a	99	70.101	Anabas_testudineus
ENSPKIG00000004422	upf3a	96	62.989	ENSACAG00000001540	UPF3A	98	62.989	Anolis_carolinensis
ENSPKIG00000004422	upf3a	83	48.020	ENSANAG00000021894	-	77	72.121	Aotus_nancymaae
ENSPKIG00000004422	upf3a	95	53.132	ENSANAG00000021713	UPF3A	87	52.822	Aotus_nancymaae
ENSPKIG00000004422	upf3a	98	41.649	ENSANAG00000025598	-	67	69.565	Aotus_nancymaae
ENSPKIG00000004422	upf3a	50	57.205	ENSACLG00000001649	upf3b	90	47.588	Astatotilapia_calliptera
ENSPKIG00000004422	upf3a	100	71.224	ENSACLG00000026274	upf3a	97	71.843	Astatotilapia_calliptera
ENSPKIG00000004422	upf3a	100	76.434	ENSAMXG00000002608	upf3a	100	76.434	Astyanax_mexicanus
ENSPKIG00000004422	upf3a	96	54.042	ENSCJAG00000019102	UPF3A	99	50.996	Callithrix_jacchus
ENSPKIG00000004422	upf3a	91	46.154	ENSCJAG00000004975	UPF3B	77	71.515	Callithrix_jacchus
ENSPKIG00000004422	upf3a	92	54.699	ENSCAFG00000006504	UPF3A	95	53.950	Canis_familiaris
ENSPKIG00000004422	upf3a	92	54.940	ENSCAFG00020014268	UPF3A	96	50.932	Canis_lupus_dingo
ENSPKIG00000004422	upf3a	90	53.641	ENSCHIG00000008682	UPF3A	75	57.068	Capra_hircus
ENSPKIG00000004422	upf3a	85	50.891	ENSTSYG00000001918	UPF3A	99	51.015	Carlito_syrichta
ENSPKIG00000004422	upf3a	71	61.610	ENSCPOG00000006824	UPF3A	76	61.027	Cavia_porcellus
ENSPKIG00000004422	upf3a	96	54.483	ENSCCAG00000018406	UPF3A	99	51.587	Cebus_capucinus
ENSPKIG00000004422	upf3a	82	34.817	ENSCCAG00000029813	-	52	60.759	Cebus_capucinus
ENSPKIG00000004422	upf3a	96	55.374	ENSCATG00000029733	UPF3A	99	52.305	Cercocebus_atys
ENSPKIG00000004422	upf3a	96	54.734	ENSCSAG00000017388	UPF3A	99	51.786	Chlorocebus_sabaeus
ENSPKIG00000004422	upf3a	81	58.266	ENSCGRG00001017387	Upf3a	90	54.847	Cricetulus_griseus_chok1gshd
ENSPKIG00000004422	upf3a	81	58.266	ENSCGRG00000001468	Upf3a	90	54.847	Cricetulus_griseus_crigri
ENSPKIG00000004422	upf3a	100	70.122	ENSCSEG00000005106	upf3a	99	70.122	Cynoglossus_semilaevis
ENSPKIG00000004422	upf3a	90	49.299	ENSCSEG00000002046	upf3b	89	48.678	Cynoglossus_semilaevis
ENSPKIG00000004422	upf3a	93	70.983	ENSCVAG00000022333	upf3a	88	73.253	Cyprinodon_variegatus
ENSPKIG00000004422	upf3a	100	75.820	ENSDARG00000069297	upf3a	100	75.665	Danio_rerio
ENSPKIG00000004422	upf3a	81	62.060	ENSDNOG00000034391	UPF3A	90	62.060	Dasypus_novemcinctus
ENSPKIG00000004422	upf3a	98	50.448	ENSETEG00000010110	UPF3A	99	47.683	Echinops_telfairi
ENSPKIG00000004422	upf3a	83	43.434	ENSEASG00005012919	UPF3B	67	72.464	Equus_asinus_asinus
ENSPKIG00000004422	upf3a	97	54.525	ENSEASG00005021884	UPF3A	99	51.587	Equus_asinus_asinus
ENSPKIG00000004422	upf3a	83	43.434	ENSECAG00000016947	UPF3B	67	64.286	Equus_caballus
ENSPKIG00000004422	upf3a	97	54.442	ENSECAG00000017141	UPF3A	99	51.587	Equus_caballus
ENSPKIG00000004422	upf3a	100	72.032	ENSELUG00000011050	upf3a	100	72.032	Esox_lucius
ENSPKIG00000004422	upf3a	92	57.074	ENSFCAG00000014602	UPF3A	99	52.745	Felis_catus
ENSPKIG00000004422	upf3a	73	71.045	ENSGMOG00000019615	upf3a	100	68.222	Gadus_morhua
ENSPKIG00000004422	upf3a	98	67.917	ENSGAFG00000021170	upf3a	88	74.396	Gambusia_affinis
ENSPKIG00000004422	upf3a	94	44.875	ENSGACG00000017435	upf3b	61	70.000	Gasterosteus_aculeatus
ENSPKIG00000004422	upf3a	73	70.948	ENSGACG00000001972	upf3a	100	68.915	Gasterosteus_aculeatus
ENSPKIG00000004422	upf3a	92	45.952	ENSGGOG00000043074	-	81	47.545	Gorilla_gorilla
ENSPKIG00000004422	upf3a	93	44.787	ENSGGOG00000041219	-	86	47.792	Gorilla_gorilla
ENSPKIG00000004422	upf3a	91	56.627	ENSGGOG00000015428	UPF3A	96	52.577	Gorilla_gorilla
ENSPKIG00000004422	upf3a	50	57.205	ENSHBUG00000017393	upf3b	90	48.018	Haplochromis_burtoni
ENSPKIG00000004422	upf3a	100	70.612	ENSHBUG00000011325	upf3a	97	71.369	Haplochromis_burtoni
ENSPKIG00000004422	upf3a	71	59.494	ENSHGLG00000001544	UPF3A	50	56.731	Heterocephalus_glaber_female
ENSPKIG00000004422	upf3a	71	59.494	ENSHGLG00100013244	UPF3A	50	56.731	Heterocephalus_glaber_male
ENSPKIG00000004422	upf3a	93	67.067	ENSHCOG00000013985	upf3a	84	78.818	Hippocampus_comes
ENSPKIG00000004422	upf3a	100	75.000	ENSIPUG00000023450	upf3a	100	75.000	Ictalurus_punctatus
ENSPKIG00000004422	upf3a	94	70.870	ENSKMAG00000004381	upf3a	88	75.604	Kryptolebias_marmoratus
ENSPKIG00000004422	upf3a	100	66.327	ENSLBEG00000021570	upf3a	100	65.306	Labrus_bergylta
ENSPKIG00000004422	upf3a	74	40.404	ENSLACG00000006645	UPF3A	74	89.474	Latimeria_chalumnae
ENSPKIG00000004422	upf3a	99	74.333	ENSLOCG00000002665	upf3a	99	74.333	Lepisosteus_oculatus
ENSPKIG00000004422	upf3a	97	54.817	ENSMFAG00000045016	UPF3A	99	51.411	Macaca_fascicularis
ENSPKIG00000004422	upf3a	89	57.214	ENSMMUG00000007449	UPF3A	96	53.602	Macaca_mulatta
ENSPKIG00000004422	upf3a	97	54.691	ENSMNEG00000036402	UPF3A	85	54.691	Macaca_nemestrina
ENSPKIG00000004422	upf3a	97	54.233	ENSMLEG00000014726	UPF3A	99	51.629	Mandrillus_leucophaeus
ENSPKIG00000004422	upf3a	98	71.784	ENSMAMG00000018364	upf3a	97	71.992	Mastacembelus_armatus
ENSPKIG00000004422	upf3a	50	57.205	ENSMZEG00005007871	upf3b	90	47.807	Maylandia_zebra
ENSPKIG00000004422	upf3a	100	71.224	ENSMZEG00005021571	upf3a	97	71.843	Maylandia_zebra
ENSPKIG00000004422	upf3a	94	61.682	ENSMGAG00000014837	UPF3A	99	61.682	Meleagris_gallopavo
ENSPKIG00000004422	upf3a	55	71.255	ENSMOCG00000000550	Upf3a	57	68.159	Microtus_ochrogaster
ENSPKIG00000004422	upf3a	98	70.747	ENSMMOG00000019751	upf3a	97	70.747	Mola_mola
ENSPKIG00000004422	upf3a	98	61.298	ENSMODG00000003159	UPF3A	99	61.641	Monodelphis_domestica
ENSPKIG00000004422	upf3a	51	56.897	ENSMALG00000008042	upf3b	92	47.137	Monopterus_albus
ENSPKIG00000004422	upf3a	94	53.396	ENSMPUG00000009139	UPF3A	100	47.325	Mustela_putorius_furo
ENSPKIG00000004422	upf3a	92	56.974	ENSMLUG00000015905	UPF3A	94	56.974	Myotis_lucifugus
ENSPKIG00000004422	upf3a	88	54.630	ENSNGAG00000019314	Upf3a	54	63.158	Nannospalax_galili
ENSPKIG00000004422	upf3a	100	70.612	ENSNBRG00000000828	upf3a	97	71.369	Neolamprologus_brichardi
ENSPKIG00000004422	upf3a	90	56.650	ENSNLEG00000007563	UPF3A	92	54.853	Nomascus_leucogenys
ENSPKIG00000004422	upf3a	100	70.791	ENSONIG00000006817	upf3a	97	71.546	Oreochromis_niloticus
ENSPKIG00000004422	upf3a	82	58.491	ENSOANG00000006985	-	95	59.504	Ornithorhynchus_anatinus
ENSPKIG00000004422	upf3a	97	47.273	ENSOCUG00000008450	UPF3A	93	39.606	Oryctolagus_cuniculus
ENSPKIG00000004422	upf3a	92	41.492	ENSORLG00000001026	upf3b	95	44.093	Oryzias_latipes
ENSPKIG00000004422	upf3a	100	66.526	ENSORLG00000010911	upf3a	97	68.333	Oryzias_latipes
ENSPKIG00000004422	upf3a	98	67.083	ENSORLG00020014317	upf3a	96	67.083	Oryzias_latipes_hni
ENSPKIG00000004422	upf3a	94	41.895	ENSORLG00020003758	upf3b	95	44.726	Oryzias_latipes_hni
ENSPKIG00000004422	upf3a	100	67.273	ENSORLG00015017339	upf3a	51	74.396	Oryzias_latipes_hsok
ENSPKIG00000004422	upf3a	98	68.958	ENSOMEG00000014425	upf3a	97	68.958	Oryzias_melastigma
ENSPKIG00000004422	upf3a	90	54.501	ENSOARG00000009004	UPF3A	80	58.005	Ovis_aries
ENSPKIG00000004422	upf3a	91	55.663	ENSPPAG00000042267	UPF3A	92	50.452	Pan_paniscus
ENSPKIG00000004422	upf3a	92	57.074	ENSPPRG00000025062	UPF3A	99	52.663	Panthera_pardus
ENSPKIG00000004422	upf3a	93	45.261	ENSPTRG00000041187	-	92	44.091	Pan_troglodytes
ENSPKIG00000004422	upf3a	91	55.904	ENSPTRG00000006073	UPF3A	96	52.263	Pan_troglodytes
ENSPKIG00000004422	upf3a	91	42.754	ENSPTRG00000051640	-	90	44.213	Pan_troglodytes
ENSPKIG00000004422	upf3a	93	44.076	ENSPTRG00000041835	-	85	44.416	Pan_troglodytes
ENSPKIG00000004422	upf3a	90	57.072	ENSPANG00000004346	UPF3A	92	56.236	Papio_anubis
ENSPKIG00000004422	upf3a	96	63.761	ENSPSIG00000007468	UPF3A	99	63.761	Pelodiscus_sinensis
ENSPKIG00000004422	upf3a	100	67.083	ENSPMGG00000012696	upf3a	93	70.753	Periophthalmus_magnuspinnatus
ENSPKIG00000004422	upf3a	81	61.096	ENSPEMG00000019968	-	92	58.145	Peromyscus_maniculatus_bairdii
ENSPKIG00000004422	upf3a	89	67.411	ENSPCIG00000019590	-	86	73.762	Phascolarctos_cinereus
ENSPKIG00000004422	upf3a	98	67.708	ENSPFOG00000013222	upf3a	88	74.155	Poecilia_formosa
ENSPKIG00000004422	upf3a	98	66.875	ENSPLAG00000011960	upf3a	94	68.696	Poecilia_latipinna
ENSPKIG00000004422	upf3a	98	68.750	ENSPMEG00000000836	upf3a	93	70.217	Poecilia_mexicana
ENSPKIG00000004422	upf3a	90	56.897	ENSPPYG00000005536	UPF3A	99	51.786	Pongo_abelii
ENSPKIG00000004422	upf3a	66	54.491	ENSPCAG00000013124	UPF3A	70	54.655	Procavia_capensis
ENSPKIG00000004422	upf3a	83	47.160	ENSPCOG00000021960	UPF3B	51	72.561	Propithecus_coquereli
ENSPKIG00000004422	upf3a	92	54.306	ENSPVAG00000005656	UPF3A	96	51.335	Pteropus_vampyrus
ENSPKIG00000004422	upf3a	100	71.224	ENSPNYG00000011289	upf3a	97	71.843	Pundamilia_nyererei
ENSPKIG00000004422	upf3a	86	40.191	ENSPNYG00000009846	upf3b	90	48.230	Pundamilia_nyererei
ENSPKIG00000004422	upf3a	91	48.961	ENSPNAG00000021528	upf3b	89	47.884	Pygocentrus_nattereri
ENSPKIG00000004422	upf3a	100	76.025	ENSPNAG00000019532	upf3a	100	76.025	Pygocentrus_nattereri
ENSPKIG00000004422	upf3a	96	54.312	ENSRBIG00000034007	UPF3A	92	54.299	Rhinopithecus_bieti
ENSPKIG00000004422	upf3a	96	55.349	ENSRROG00000012212	UPF3A	85	55.349	Rhinopithecus_roxellana
ENSPKIG00000004422	upf3a	89	51.244	ENSSBOG00000029989	UPF3A	85	51.244	Saimiri_boliviensis_boliviensis
ENSPKIG00000004422	upf3a	83	47.549	ENSSBOG00000019740	UPF3B	78	73.006	Saimiri_boliviensis_boliviensis
ENSPKIG00000004422	upf3a	96	61.697	ENSSHAG00000009895	UPF3A	97	62.759	Sarcophilus_harrisii
ENSPKIG00000004422	upf3a	100	69.672	ENSSFOG00015021851	upf3a	100	69.467	Scleropages_formosus
ENSPKIG00000004422	upf3a	90	48.712	ENSSMAG00000012913	upf3b	91	48.478	Scophthalmus_maximus
ENSPKIG00000004422	upf3a	98	70.495	ENSSMAG00000003858	upf3a	95	75.000	Scophthalmus_maximus
ENSPKIG00000004422	upf3a	100	71.837	ENSSDUG00000009680	upf3a	91	85.135	Seriola_dumerili
ENSPKIG00000004422	upf3a	50	58.159	ENSSDUG00000005682	upf3b	90	48.458	Seriola_dumerili
ENSPKIG00000004422	upf3a	100	71.020	ENSSLDG00000009700	upf3a	97	71.784	Seriola_lalandi_dorsalis
ENSPKIG00000004422	upf3a	50	58.159	ENSSLDG00000003130	upf3b	90	48.791	Seriola_lalandi_dorsalis
ENSPKIG00000004422	upf3a	68	79.412	ENSSARG00000007262	UPF3A	94	45.652	Sorex_araneus
ENSPKIG00000004422	upf3a	100	69.684	ENSSPAG00000007938	upf3a	97	71.667	Stegastes_partitus
ENSPKIG00000004422	upf3a	51	69.068	ENSSPAG00000009989	upf3b	90	48.322	Stegastes_partitus
ENSPKIG00000004422	upf3a	98	53.483	ENSSSCG00000024679	UPF3A	96	47.531	Sus_scrofa
ENSPKIG00000004422	upf3a	91	64.976	ENSTGUG00000009493	UPF3A	97	68.653	Taeniopygia_guttata
ENSPKIG00000004422	upf3a	99	68.443	ENSTRUG00000012730	upf3a	97	71.269	Takifugu_rubripes
ENSPKIG00000004422	upf3a	91	62.103	ENSTNIG00000014973	upf3a	97	66.580	Tetraodon_nigroviridis
ENSPKIG00000004422	upf3a	87	51.508	ENSTTRG00000015414	UPF3A	78	51.508	Tursiops_truncatus
ENSPKIG00000004422	upf3a	89	56.328	ENSVPAG00000003525	UPF3A	91	59.517	Vicugna_pacos
ENSPKIG00000004422	upf3a	98	51.685	ENSVVUG00000013538	UPF3A	84	51.656	Vulpes_vulpes
ENSPKIG00000004422	upf3a	96	41.950	ENSXETG00000007440	upf3b	71	73.006	Xenopus_tropicalis
ENSPKIG00000004422	upf3a	90	53.598	ENSXETG00000002572	upf3a	98	53.333	Xenopus_tropicalis
ENSPKIG00000004422	upf3a	98	67.917	ENSXMAG00000013452	upf3a	88	74.396	Xiphophorus_maculatus