EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000005428 (Gene tree)
Gene ID: 111833558
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 16527 bases
Position: chrPGUA01000046.1:983432-999958
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000020809	Ago_hook	PF10427.9	2.9e-08	1	1
ENSPKIP00000020809	RRM_1	PF00076.22	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000001431	-	4848	-	ENSPKIP00000020809	1615 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000005428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000005428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000005428	tnrc6c1	83	50.787	ENSPKIG00000012859	tnrc6a	57	49.460

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000005428	tnrc6c1	100	51.577	ENSG00000078687	TNRC6C	97	58.407	Homo_sapiens
ENSPKIG00000005428	tnrc6c1	100	58.588	ENSAPOG00000019749	tnrc6c1	94	57.159	Acanthochromis_polyacanthus
ENSPKIG00000005428	tnrc6c1	98	51.471	ENSAMEG00000013756	TNRC6C	92	52.563	Ailuropoda_melanoleuca
ENSPKIG00000005428	tnrc6c1	100	56.022	ENSACIG00000008075	tnrc6c1	93	56.201	Amphilophus_citrinellus
ENSPKIG00000005428	tnrc6c1	95	69.136	ENSAOCG00000023968	tnrc6c1	94	68.779	Amphiprion_ocellaris
ENSPKIG00000005428	tnrc6c1	100	58.226	ENSAPEG00000009020	tnrc6c1	94	57.925	Amphiprion_percula
ENSPKIG00000005428	tnrc6c1	98	53.144	ENSAPLG00000005456	TNRC6C	87	52.934	Anas_platyrhynchos
ENSPKIG00000005428	tnrc6c1	100	51.634	ENSACAG00000016198	TNRC6C	85	52.450	Anolis_carolinensis
ENSPKIG00000005428	tnrc6c1	100	51.103	ENSANAG00000021554	TNRC6C	59	62.027	Aotus_nancymaae
ENSPKIG00000005428	tnrc6c1	100	55.811	ENSACLG00000000424	tnrc6c1	93	56.220	Astatotilapia_calliptera
ENSPKIG00000005428	tnrc6c1	98	51.200	ENSBTAG00000018658	TNRC6C	59	63.868	Bos_taurus
ENSPKIG00000005428	tnrc6c1	100	50.937	ENSCJAG00000019431	TNRC6C	96	51.694	Callithrix_jacchus
ENSPKIG00000005428	tnrc6c1	98	51.998	ENSCAFG00000005224	TNRC6C	91	49.028	Canis_familiaris
ENSPKIG00000005428	tnrc6c1	98	51.705	ENSCAFG00020006661	TNRC6C	96	51.354	Canis_lupus_dingo
ENSPKIG00000005428	tnrc6c1	98	51.539	ENSCHIG00000026004	TNRC6C	57	62.707	Capra_hircus
ENSPKIG00000005428	tnrc6c1	98	52.854	ENSTSYG00000005403	TNRC6C	96	53.709	Carlito_syrichta
ENSPKIG00000005428	tnrc6c1	99	46.749	ENSCAPG00000007307	TNRC6C	86	47.749	Cavia_aperea
ENSPKIG00000005428	tnrc6c1	100	49.805	ENSCPOG00000000467	TNRC6C	94	51.432	Cavia_porcellus
ENSPKIG00000005428	tnrc6c1	100	51.356	ENSCCAG00000030524	TNRC6C	96	52.493	Cebus_capucinus
ENSPKIG00000005428	tnrc6c1	100	51.688	ENSCATG00000033135	TNRC6C	96	53.012	Cercocebus_atys
ENSPKIG00000005428	tnrc6c1	100	50.472	ENSCLAG00000011139	TNRC6C	86	51.845	Chinchilla_lanigera
ENSPKIG00000005428	tnrc6c1	100	51.410	ENSCSAG00000005167	TNRC6C	86	52.722	Chlorocebus_sabaeus
ENSPKIG00000005428	tnrc6c1	70	67.769	ENSCHOG00000000088	TNRC6C	68	67.769	Choloepus_hoffmanni
ENSPKIG00000005428	tnrc6c1	100	51.557	ENSCPBG00000027960	TNRC6C	58	62.892	Chrysemys_picta_bellii
ENSPKIG00000005428	tnrc6c1	100	51.411	ENSCANG00000041771	TNRC6C	96	52.897	Colobus_angolensis_palliatus
ENSPKIG00000005428	tnrc6c1	98	51.171	ENSCGRG00001022686	Tnrc6c	96	50.837	Cricetulus_griseus_chok1gshd
ENSPKIG00000005428	tnrc6c1	98	51.406	ENSCGRG00000018041	Tnrc6c	96	50.837	Cricetulus_griseus_crigri
ENSPKIG00000005428	tnrc6c1	100	56.462	ENSCSEG00000012744	tnrc6c1	90	55.709	Cynoglossus_semilaevis
ENSPKIG00000005428	tnrc6c1	100	65.281	ENSDARG00000076847	tnrc6c1	99	64.774	Danio_rerio
ENSPKIG00000005428	tnrc6c1	100	50.968	ENSDNOG00000003247	TNRC6C	88	52.632	Dasypus_novemcinctus
ENSPKIG00000005428	tnrc6c1	98	49.153	ENSDORG00000004558	Tnrc6c	92	59.679	Dipodomys_ordii
ENSPKIG00000005428	tnrc6c1	88	54.650	ENSETEG00000005527	TNRC6C	73	57.685	Echinops_telfairi
ENSPKIG00000005428	tnrc6c1	100	49.945	ENSEASG00005004799	TNRC6C	96	52.389	Equus_asinus_asinus
ENSPKIG00000005428	tnrc6c1	100	50.415	ENSECAG00000012486	TNRC6C	86	53.157	Equus_caballus
ENSPKIG00000005428	tnrc6c1	96	54.202	ENSEEUG00000010008	TNRC6C	84	57.346	Erinaceus_europaeus
ENSPKIG00000005428	tnrc6c1	98	51.188	ENSFCAG00000028358	TNRC6C	96	52.266	Felis_catus
ENSPKIG00000005428	tnrc6c1	100	50.815	ENSFALG00000000848	TNRC6C	96	52.171	Ficedula_albicollis
ENSPKIG00000005428	tnrc6c1	100	50.278	ENSFDAG00000010368	TNRC6C	90	61.443	Fukomys_damarensis
ENSPKIG00000005428	tnrc6c1	100	57.258	ENSFHEG00000002936	tnrc6c1	91	57.356	Fundulus_heteroclitus
ENSPKIG00000005428	tnrc6c1	98	53.318	ENSGALG00000001725	TNRC6C	96	52.741	Gallus_gallus
ENSPKIG00000005428	tnrc6c1	100	56.397	ENSGAFG00000019019	tnrc6c1	100	54.645	Gambusia_affinis
ENSPKIG00000005428	tnrc6c1	100	56.418	ENSGACG00000012320	tnrc6c1	85	56.159	Gasterosteus_aculeatus
ENSPKIG00000005428	tnrc6c1	100	52.188	ENSGAGG00000022043	TNRC6C	57	63.576	Gopherus_agassizii
ENSPKIG00000005428	tnrc6c1	100	51.909	ENSGGOG00000011304	TNRC6C	96	53.009	Gorilla_gorilla
ENSPKIG00000005428	tnrc6c1	100	55.581	ENSHBUG00000010846	tnrc6c1	100	55.369	Haplochromis_burtoni
ENSPKIG00000005428	tnrc6c1	100	50.306	ENSHGLG00000004809	TNRC6C	86	51.643	Heterocephalus_glaber_female
ENSPKIG00000005428	tnrc6c1	100	50.000	ENSHGLG00100012597	TNRC6C	52	61.174	Heterocephalus_glaber_male
ENSPKIG00000005428	tnrc6c1	100	61.726	ENSIPUG00000000818	tnrc6c1	89	61.823	Ictalurus_punctatus
ENSPKIG00000005428	tnrc6c1	98	51.197	ENSSTOG00000009101	TNRC6C	94	51.931	Ictidomys_tridecemlineatus
ENSPKIG00000005428	tnrc6c1	100	50.472	ENSJJAG00000017055	Tnrc6c	52	61.379	Jaculus_jaculus
ENSPKIG00000005428	tnrc6c1	100	56.439	ENSKMAG00000021023	tnrc6c1	100	54.670	Kryptolebias_marmoratus
ENSPKIG00000005428	tnrc6c1	100	48.885	ENSLACG00000015283	TNRC6C	89	71.271	Latimeria_chalumnae
ENSPKIG00000005428	tnrc6c1	99	65.115	ENSLOCG00000013377	tnrc6c1	89	65.527	Lepisosteus_oculatus
ENSPKIG00000005428	tnrc6c1	100	50.636	ENSLAFG00000011122	TNRC6C	83	62.053	Loxodonta_africana
ENSPKIG00000005428	tnrc6c1	100	51.688	ENSMFAG00000043943	TNRC6C	96	52.779	Macaca_fascicularis
ENSPKIG00000005428	tnrc6c1	100	51.688	ENSMMUG00000011924	TNRC6C	96	51.894	Macaca_mulatta
ENSPKIG00000005428	tnrc6c1	100	51.183	ENSMNEG00000030405	TNRC6C	96	51.837	Macaca_nemestrina
ENSPKIG00000005428	tnrc6c1	100	51.688	ENSMLEG00000033436	TNRC6C	96	52.779	Mandrillus_leucophaeus
ENSPKIG00000005428	tnrc6c1	100	57.674	ENSMAMG00000023613	tnrc6c1	97	58.709	Mastacembelus_armatus
ENSPKIG00000005428	tnrc6c1	100	56.582	ENSMZEG00005010920	tnrc6c1	94	56.199	Maylandia_zebra
ENSPKIG00000005428	tnrc6c1	98	48.528	ENSMGAG00000003906	TNRC6C	87	48.889	Meleagris_gallopavo
ENSPKIG00000005428	tnrc6c1	98	50.884	ENSMAUG00000021618	Tnrc6c	59	60.886	Mesocricetus_auratus
ENSPKIG00000005428	tnrc6c1	100	50.803	ENSMICG00000003952	TNRC6C	93	63.834	Microcebus_murinus
ENSPKIG00000005428	tnrc6c1	98	50.774	ENSMOCG00000015879	Tnrc6c	57	61.823	Microtus_ochrogaster
ENSPKIG00000005428	tnrc6c1	100	57.506	ENSMMOG00000005203	tnrc6c1	100	56.645	Mola_mola
ENSPKIG00000005428	tnrc6c1	98	52.454	ENSMODG00000001785	TNRC6C	85	62.111	Monodelphis_domestica
ENSPKIG00000005428	tnrc6c1	98	51.201	MGP_CAROLIEiJ_G0017465	Tnrc6c	90	61.728	Mus_caroli
ENSPKIG00000005428	tnrc6c1	98	51.373	ENSMUSG00000025571	Tnrc6c	90	62.108	Mus_musculus
ENSPKIG00000005428	tnrc6c1	98	51.430	MGP_PahariEiJ_G0018593	Tnrc6c	90	62.108	Mus_pahari
ENSPKIG00000005428	tnrc6c1	98	51.259	MGP_SPRETEiJ_G0018309	Tnrc6c	90	61.823	Mus_spretus
ENSPKIG00000005428	tnrc6c1	98	51.691	ENSMPUG00000013348	TNRC6C	85	53.012	Mustela_putorius_furo
ENSPKIG00000005428	tnrc6c1	98	50.312	ENSMLUG00000014431	TNRC6C	85	50.342	Myotis_lucifugus
ENSPKIG00000005428	tnrc6c1	98	51.606	ENSNGAG00000012203	Tnrc6c	52	61.734	Nannospalax_galili
ENSPKIG00000005428	tnrc6c1	100	56.913	ENSNBRG00000005344	tnrc6c1	94	56.955	Neolamprologus_brichardi
ENSPKIG00000005428	tnrc6c1	100	52.121	ENSNLEG00000000047	TNRC6C	53	64.394	Nomascus_leucogenys
ENSPKIG00000005428	tnrc6c1	92	73.762	ENSMEUG00000005104	TNRC6C	92	73.762	Notamacropus_eugenii
ENSPKIG00000005428	tnrc6c1	98	51.433	ENSODEG00000012499	TNRC6C	59	62.203	Octodon_degus
ENSPKIG00000005428	tnrc6c1	100	56.545	ENSONIG00000002210	tnrc6c1	100	56.409	Oreochromis_niloticus
ENSPKIG00000005428	tnrc6c1	79	54.519	ENSOANG00000009758	-	67	55.423	Ornithorhynchus_anatinus
ENSPKIG00000005428	tnrc6c1	100	54.352	ENSORLG00000009837	tnrc6c1	99	76.208	Oryzias_latipes
ENSPKIG00000005428	tnrc6c1	100	55.204	ENSORLG00020016510	tnrc6c1	100	54.043	Oryzias_latipes_hni
ENSPKIG00000005428	tnrc6c1	78	49.411	ENSORLG00015000171	tnrc6c1	98	47.927	Oryzias_latipes_hsok
ENSPKIG00000005428	tnrc6c1	100	55.174	ENSOMEG00000000357	tnrc6c1	94	54.954	Oryzias_melastigma
ENSPKIG00000005428	tnrc6c1	98	51.256	ENSOGAG00000007197	TNRC6C	96	52.592	Otolemur_garnettii
ENSPKIG00000005428	tnrc6c1	100	51.688	ENSPPAG00000027160	TNRC6C	96	52.894	Pan_paniscus
ENSPKIG00000005428	tnrc6c1	98	51.105	ENSPPRG00000018881	TNRC6C	96	52.094	Panthera_pardus
ENSPKIG00000005428	tnrc6c1	100	51.688	ENSPTRG00000009699	TNRC6C	96	52.894	Pan_troglodytes
ENSPKIG00000005428	tnrc6c1	100	51.460	ENSPANG00000019994	TNRC6C	96	51.984	Papio_anubis
ENSPKIG00000005428	tnrc6c1	98	51.486	ENSPSIG00000018069	TNRC6C	93	51.473	Pelodiscus_sinensis
ENSPKIG00000005428	tnrc6c1	84	66.811	ENSPMGG00000022911	tnrc6c1	96	72.314	Periophthalmus_magnuspinnatus
ENSPKIG00000005428	tnrc6c1	100	50.139	ENSPEMG00000009785	Tnrc6c	58	57.399	Peromyscus_maniculatus_bairdii
ENSPKIG00000005428	tnrc6c1	51	42.931	ENSPCIG00000017421	-	94	42.368	Phascolarctos_cinereus
ENSPKIG00000005428	tnrc6c1	100	56.930	ENSPFOG00000012560	tnrc6c1	99	57.468	Poecilia_formosa
ENSPKIG00000005428	tnrc6c1	100	56.028	ENSPLAG00000021055	tnrc6c1	100	54.766	Poecilia_latipinna
ENSPKIG00000005428	tnrc6c1	100	51.799	ENSPPYG00000008679	TNRC6C	85	52.894	Pongo_abelii
ENSPKIG00000005428	tnrc6c1	87	70.690	ENSPCAG00000012510	TNRC6C	83	72.851	Procavia_capensis
ENSPKIG00000005428	tnrc6c1	100	51.164	ENSPCOG00000021451	TNRC6C	92	63.928	Propithecus_coquereli
ENSPKIG00000005428	tnrc6c1	93	70.833	ENSPVAG00000002008	TNRC6C	89	70.833	Pteropus_vampyrus
ENSPKIG00000005428	tnrc6c1	100	56.640	ENSPNYG00000014477	tnrc6c1	100	55.459	Pundamilia_nyererei
ENSPKIG00000005428	tnrc6c1	98	50.801	ENSRNOG00000022395	Tnrc6c	93	61.823	Rattus_norvegicus
ENSPKIG00000005428	tnrc6c1	100	51.745	ENSRBIG00000027777	TNRC6C	96	52.840	Rhinopithecus_bieti
ENSPKIG00000005428	tnrc6c1	100	51.743	ENSRROG00000042912	TNRC6C	96	52.837	Rhinopithecus_roxellana
ENSPKIG00000005428	tnrc6c1	100	51.164	ENSSBOG00000023981	TNRC6C	96	52.526	Saimiri_boliviensis_boliviensis
ENSPKIG00000005428	tnrc6c1	56	64.248	ENSSHAG00000018330	-	100	65.016	Sarcophilus_harrisii
ENSPKIG00000005428	tnrc6c1	92	57.339	ENSSFOG00015004735	-	100	67.519	Scleropages_formosus
ENSPKIG00000005428	tnrc6c1	100	71.496	ENSSFOG00015006475	tnrc6c1	92	71.021	Scleropages_formosus
ENSPKIG00000005428	tnrc6c1	100	56.765	ENSSMAG00000012761	tnrc6c1	100	56.095	Scophthalmus_maximus
ENSPKIG00000005428	tnrc6c1	100	58.186	ENSSDUG00000002366	tnrc6c1	93	57.867	Seriola_dumerili
ENSPKIG00000005428	tnrc6c1	100	57.381	ENSSLDG00000025613	tnrc6c1	100	56.995	Seriola_lalandi_dorsalis
ENSPKIG00000005428	tnrc6c1	70	71.074	ENSSARG00000006816	TNRC6C	81	71.074	Sorex_araneus
ENSPKIG00000005428	tnrc6c1	86	55.023	ENSSPUG00000007341	TNRC6C	65	62.852	Sphenodon_punctatus
ENSPKIG00000005428	tnrc6c1	57	51.497	ENSSPAG00000014977	tnrc6c1	92	57.641	Stegastes_partitus
ENSPKIG00000005428	tnrc6c1	92	62.875	ENSSSCG00000034373	TNRC6C	96	61.876	Sus_scrofa
ENSPKIG00000005428	tnrc6c1	100	51.195	ENSTGUG00000007733	TNRC6C	94	51.871	Taeniopygia_guttata
ENSPKIG00000005428	tnrc6c1	100	57.497	ENSTRUG00000011685	tnrc6c1	100	56.999	Takifugu_rubripes
ENSPKIG00000005428	tnrc6c1	100	55.957	ENSTNIG00000005273	tnrc6c1	100	63.592	Tetraodon_nigroviridis
ENSPKIG00000005428	tnrc6c1	67	54.849	ENSTBEG00000005046	TNRC6C	61	64.381	Tupaia_belangeri
ENSPKIG00000005428	tnrc6c1	98	52.092	ENSTTRG00000010828	TNRC6C	93	52.704	Tursiops_truncatus
ENSPKIG00000005428	tnrc6c1	98	50.256	ENSUMAG00000013614	TNRC6C	87	51.805	Ursus_maritimus
ENSPKIG00000005428	tnrc6c1	57	48.950	ENSVPAG00000006765	-	90	50.708	Vicugna_pacos
ENSPKIG00000005428	tnrc6c1	98	51.604	ENSVVUG00000015268	TNRC6C	96	52.450	Vulpes_vulpes
ENSPKIG00000005428	tnrc6c1	100	51.008	ENSXETG00000019470	tnrc6c	96	52.014	Xenopus_tropicalis
ENSPKIG00000005428	tnrc6c1	100	55.319	ENSXMAG00000025971	tnrc6c1	100	54.761	Xiphophorus_maculatus