EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000006069 (Gene tree)
Gene ID: 111860382
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 11570 bases
Position: chrPGUA01000005.1:375299-386868
Accession: 111860382
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000021830	UPF1_Zn_bind	PF09416.10	8.5e-75	1	1
ENSPKIP00000021830	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000002474	-	3119	XM_023844065	ENSPKIP00000021830	1039 (aa)	XP_023699833	-

Gene Model

Click here to download ENSPKIG00000006069's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03013	RNA transport	KEGG
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000006069's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000006069	upf1	99	92.155	ENSG00000005007	UPF1	91	94.634	Homo_sapiens
ENSPKIG00000006069	upf1	97	95.545	ENSAPOG00000023773	upf1	92	95.912	Acanthochromis_polyacanthus
ENSPKIG00000006069	upf1	95	96.173	ENSAPOG00000010916	-	91	95.238	Acanthochromis_polyacanthus
ENSPKIG00000006069	upf1	99	91.816	ENSAMEG00000011474	UPF1	94	91.910	Ailuropoda_melanoleuca
ENSPKIG00000006069	upf1	88	95.969	ENSACIG00000010985	-	91	94.268	Amphilophus_citrinellus
ENSPKIG00000006069	upf1	96	96.389	ENSACIG00000019949	upf1	91	96.389	Amphilophus_citrinellus
ENSPKIG00000006069	upf1	95	96.274	ENSAOCG00000006352	-	91	95.337	Amphiprion_ocellaris
ENSPKIG00000006069	upf1	97	95.545	ENSAOCG00000018519	upf1	92	95.491	Amphiprion_ocellaris
ENSPKIG00000006069	upf1	96	95.892	ENSAPEG00000006292	-	91	95.337	Amphiprion_percula
ENSPKIG00000006069	upf1	97	95.545	ENSAPEG00000016344	upf1	92	95.491	Amphiprion_percula
ENSPKIG00000006069	upf1	95	96.964	ENSATEG00000017867	upf1	90	95.631	Anabas_testudineus
ENSPKIG00000006069	upf1	95	96.173	ENSATEG00000016606	-	92	94.970	Anabas_testudineus
ENSPKIG00000006069	upf1	91	96.855	ENSAPLG00000009175	UPF1	90	96.455	Anas_platyrhynchos
ENSPKIG00000006069	upf1	94	92.113	ENSANAG00000024107	UPF1	89	92.113	Aotus_nancymaae
ENSPKIG00000006069	upf1	95	96.270	ENSACLG00000022630	-	91	95.333	Astatotilapia_calliptera
ENSPKIG00000006069	upf1	96	96.289	ENSACLG00000007181	upf1	91	96.289	Astatotilapia_calliptera
ENSPKIG00000006069	upf1	97	96.822	ENSAMXG00000042187	upf1	91	96.822	Astyanax_mexicanus
ENSPKIG00000006069	upf1	99	91.831	ENSBTAG00000020922	UPF1	94	91.925	Bos_taurus
ENSPKIG00000006069	upf1	86	55.011	WBGene00004880	smg-2	83	54.900	Caenorhabditis_elegans
ENSPKIG00000006069	upf1	99	91.386	ENSCJAG00000019627	UPF1	91	93.816	Callithrix_jacchus
ENSPKIG00000006069	upf1	99	91.573	ENSCAFG00000014578	UPF1	91	94.010	Canis_familiaris
ENSPKIG00000006069	upf1	99	92.344	ENSCAFG00020012347	UPF1	91	94.829	Canis_lupus_dingo
ENSPKIG00000006069	upf1	99	92.607	ENSCHIG00000011018	UPF1	91	95.108	Capra_hircus
ENSPKIG00000006069	upf1	94	93.909	ENSTSYG00000008877	UPF1	91	93.909	Carlito_syrichta
ENSPKIG00000006069	upf1	92	95.455	ENSCAPG00000005758	UPF1	86	96.130	Cavia_aperea
ENSPKIG00000006069	upf1	97	95.177	ENSCPOG00000025463	UPF1	91	95.177	Cavia_porcellus
ENSPKIG00000006069	upf1	99	92.155	ENSCCAG00000032175	UPF1	94	92.170	Cebus_capucinus
ENSPKIG00000006069	upf1	94	93.604	ENSCATG00000040306	UPF1	92	93.152	Cercocebus_atys
ENSPKIG00000006069	upf1	91	96.339	ENSCLAG00000004037	UPF1	94	93.731	Chinchilla_lanigera
ENSPKIG00000006069	upf1	99	92.155	ENSCSAG00000005276	UPF1	91	94.634	Chlorocebus_sabaeus
ENSPKIG00000006069	upf1	96	95.365	ENSCPBG00000012513	UPF1	90	95.365	Chrysemys_picta_bellii
ENSPKIG00000006069	upf1	82	79.649	ENSCING00000021399	-	99	80.000	Ciona_intestinalis
ENSPKIG00000006069	upf1	97	74.165	ENSCSAVG00000006533	-	92	74.263	Ciona_savignyi
ENSPKIG00000006069	upf1	94	93.529	ENSCANG00000029819	UPF1	91	93.529	Colobus_angolensis_palliatus
ENSPKIG00000006069	upf1	97	94.706	ENSCGRG00001021067	Upf1	91	94.804	Cricetulus_griseus_chok1gshd
ENSPKIG00000006069	upf1	91	95.816	ENSCGRG00000013480	Upf1	89	95.816	Cricetulus_griseus_crigri
ENSPKIG00000006069	upf1	97	94.581	ENSCSEG00000016159	-	92	94.581	Cynoglossus_semilaevis
ENSPKIG00000006069	upf1	95	90.900	ENSCSEG00000017239	upf1	96	87.177	Cynoglossus_semilaevis
ENSPKIG00000006069	upf1	95	95.871	ENSCVAG00000010561	upf1	91	94.940	Cyprinodon_variegatus
ENSPKIG00000006069	upf1	97	96.524	ENSDARG00000016302	upf1	91	96.524	Danio_rerio
ENSPKIG00000006069	upf1	94	90.606	ENSDORG00000009984	Upf1	89	90.606	Dipodomys_ordii
ENSPKIG00000006069	upf1	90	72.611	FBgn0030354	Upf1	87	67.625	Drosophila_melanogaster
ENSPKIG00000006069	upf1	58	87.129	ENSEBUG00000010069	upf1	96	87.459	Eptatretus_burgeri
ENSPKIG00000006069	upf1	97	95.010	ENSEASG00005006549	UPF1	91	95.108	Equus_asinus_asinus
ENSPKIG00000006069	upf1	97	95.010	ENSECAG00000010639	UPF1	91	95.108	Equus_caballus
ENSPKIG00000006069	upf1	96	95.314	ENSELUG00000012916	-	91	94.395	Esox_lucius
ENSPKIG00000006069	upf1	95	96.259	ENSELUG00000020917	upf1	92	97.433	Esox_lucius
ENSPKIG00000006069	upf1	99	91.573	ENSFCAG00000009757	UPF1	91	94.010	Felis_catus
ENSPKIG00000006069	upf1	91	97.257	ENSFALG00000009312	UPF1	86	97.257	Ficedula_albicollis
ENSPKIG00000006069	upf1	91	96.234	ENSFDAG00000014816	UPF1	94	93.630	Fukomys_damarensis
ENSPKIG00000006069	upf1	81	96.154	ENSFHEG00000016276	-	87	95.274	Fundulus_heteroclitus
ENSPKIG00000006069	upf1	97	92.201	ENSFHEG00000006428	upf1	89	94.292	Fundulus_heteroclitus
ENSPKIG00000006069	upf1	95	95.300	ENSGMOG00000007541	upf1	92	93.398	Gadus_morhua
ENSPKIG00000006069	upf1	97	94.819	ENSGALG00000003220	UPF1	91	94.819	Gallus_gallus
ENSPKIG00000006069	upf1	67	95.971	ENSGAFG00000015443	-	85	95.971	Gambusia_affinis
ENSPKIG00000006069	upf1	95	95.871	ENSGAFG00000004831	upf1	92	94.940	Gambusia_affinis
ENSPKIG00000006069	upf1	97	95.108	ENSGAGG00000022217	UPF1	91	95.205	Gopherus_agassizii
ENSPKIG00000006069	upf1	94	94.382	ENSGGOG00000002608	UPF1	92	94.382	Gorilla_gorilla
ENSPKIG00000006069	upf1	88	96.937	ENSHBUG00000008939	upf1	91	96.937	Haplochromis_burtoni
ENSPKIG00000006069	upf1	87	82.249	ENSHBUG00000014694	upf1	92	82.249	Haplochromis_burtoni
ENSPKIG00000006069	upf1	99	91.667	ENSHGLG00000010900	UPF1	94	91.760	Heterocephalus_glaber_female
ENSPKIG00000006069	upf1	91	94.848	ENSHGLG00100005904	UPF1	90	92.012	Heterocephalus_glaber_male
ENSPKIG00000006069	upf1	95	95.871	ENSHCOG00000008918	upf1	91	94.477	Hippocampus_comes
ENSPKIG00000006069	upf1	97	97.021	ENSIPUG00000005108	UPF1	91	97.021	Ictalurus_punctatus
ENSPKIG00000006069	upf1	99	92.250	ENSSTOG00000009196	UPF1	94	92.344	Ictidomys_tridecemlineatus
ENSPKIG00000006069	upf1	99	91.517	ENSJJAG00000023151	Upf1	94	91.612	Jaculus_jaculus
ENSPKIG00000006069	upf1	95	95.871	ENSKMAG00000004962	upf1	91	94.940	Kryptolebias_marmoratus
ENSPKIG00000006069	upf1	95	95.871	ENSLBEG00000027848	-	91	94.940	Labrus_bergylta
ENSPKIG00000006069	upf1	96	95.495	ENSLBEG00000014862	upf1	89	95.495	Labrus_bergylta
ENSPKIG00000006069	upf1	57	98.299	ENSLACG00000008482	UPF1	84	98.299	Latimeria_chalumnae
ENSPKIG00000006069	upf1	97	97.236	ENSLOCG00000002072	upf1	91	97.236	Lepisosteus_oculatus
ENSPKIG00000006069	upf1	99	91.581	ENSLAFG00000014963	UPF1	94	91.674	Loxodonta_africana
ENSPKIG00000006069	upf1	99	92.075	ENSMFAG00000037748	UPF1	94	92.170	Macaca_fascicularis
ENSPKIG00000006069	upf1	99	91.816	ENSMMUG00000023286	UPF1	94	91.910	Macaca_mulatta
ENSPKIG00000006069	upf1	99	92.075	ENSMNEG00000000046	UPF1	94	92.170	Macaca_nemestrina
ENSPKIG00000006069	upf1	94	93.529	ENSMLEG00000028404	UPF1	94	93.529	Mandrillus_leucophaeus
ENSPKIG00000006069	upf1	95	96.162	ENSMAMG00000006231	-	92	94.291	Mastacembelus_armatus
ENSPKIG00000006069	upf1	97	95.626	ENSMAMG00000006229	upf1	90	95.626	Mastacembelus_armatus
ENSPKIG00000006069	upf1	95	96.862	ENSMZEG00005003489	upf1	92	94.701	Maylandia_zebra
ENSPKIG00000006069	upf1	95	96.270	ENSMZEG00005016386	-	91	95.333	Maylandia_zebra
ENSPKIG00000006069	upf1	91	95.925	ENSMGAG00000004745	UPF1	90	95.925	Meleagris_gallopavo
ENSPKIG00000006069	upf1	91	95.816	ENSMAUG00000011398	Upf1	86	95.816	Mesocricetus_auratus
ENSPKIG00000006069	upf1	99	92.344	ENSMICG00000001659	UPF1	94	92.439	Microcebus_murinus
ENSPKIG00000006069	upf1	99	91.533	ENSMOCG00000005699	Upf1	91	94.078	Microtus_ochrogaster
ENSPKIG00000006069	upf1	90	93.490	ENSMMOG00000007537	-	91	92.542	Mola_mola
ENSPKIG00000006069	upf1	95	95.947	ENSMMOG00000007881	upf1	92	94.632	Mola_mola
ENSPKIG00000006069	upf1	96	93.804	ENSMODG00000003689	UPF1	91	93.642	Monodelphis_domestica
ENSPKIG00000006069	upf1	95	94.383	ENSMALG00000018100	-	91	93.478	Monopterus_albus
ENSPKIG00000006069	upf1	95	96.457	ENSMALG00000000144	upf1	92	95.604	Monopterus_albus
ENSPKIG00000006069	upf1	97	94.608	MGP_CAROLIEiJ_G0031142	Upf1	91	94.706	Mus_caroli
ENSPKIG00000006069	upf1	97	94.608	ENSMUSG00000058301	Upf1	91	94.706	Mus_musculus
ENSPKIG00000006069	upf1	97	94.608	MGP_PahariEiJ_G0021607	Upf1	91	94.706	Mus_pahari
ENSPKIG00000006069	upf1	97	94.608	MGP_SPRETEiJ_G0032260	Upf1	91	94.706	Mus_spretus
ENSPKIG00000006069	upf1	99	92.344	ENSMPUG00000015516	UPF1	91	94.829	Mustela_putorius_furo
ENSPKIG00000006069	upf1	99	92.315	ENSMLUG00000012122	UPF1	94	92.410	Myotis_lucifugus
ENSPKIG00000006069	upf1	99	91.182	ENSNGAG00000024107	Upf1	94	91.276	Nannospalax_galili
ENSPKIG00000006069	upf1	95	92.352	ENSNBRG00000022069	-	91	94.338	Neolamprologus_brichardi
ENSPKIG00000006069	upf1	95	94.908	ENSNBRG00000000670	upf1	91	94.183	Neolamprologus_brichardi
ENSPKIG00000006069	upf1	94	87.361	ENSNLEG00000006062	UPF1	93	87.361	Nomascus_leucogenys
ENSPKIG00000006069	upf1	79	89.880	ENSMEUG00000014146	-	74	89.880	Notamacropus_eugenii
ENSPKIG00000006069	upf1	88	91.685	ENSOPRG00000014018	UPF1	88	91.685	Ochotona_princeps
ENSPKIG00000006069	upf1	99	92.844	ENSODEG00000012426	UPF1	91	95.271	Octodon_degus
ENSPKIG00000006069	upf1	95	97.065	ENSONIG00000010452	upf1	92	94.897	Oreochromis_niloticus
ENSPKIG00000006069	upf1	95	96.270	ENSONIG00000012729	-	91	95.333	Oreochromis_niloticus
ENSPKIG00000006069	upf1	96	94.358	ENSOANG00000004568	UPF1	91	93.901	Ornithorhynchus_anatinus
ENSPKIG00000006069	upf1	98	93.756	ENSORLG00000008453	upf1	93	93.756	Oryzias_latipes
ENSPKIG00000006069	upf1	98	93.665	ENSORLG00020014758	upf1	93	93.665	Oryzias_latipes_hni
ENSPKIG00000006069	upf1	98	93.665	ENSORLG00015010165	upf1	93	93.665	Oryzias_latipes_hsok
ENSPKIG00000006069	upf1	97	94.112	ENSOMEG00000003665	upf1	92	94.112	Oryzias_melastigma
ENSPKIG00000006069	upf1	99	92.250	ENSOGAG00000012866	UPF1	91	94.732	Otolemur_garnettii
ENSPKIG00000006069	upf1	96	93.842	ENSOARG00000010739	UPF1	94	93.385	Ovis_aries
ENSPKIG00000006069	upf1	94	93.454	ENSPPAG00000043884	UPF1	90	93.454	Pan_paniscus
ENSPKIG00000006069	upf1	99	91.573	ENSPPRG00000023470	UPF1	91	94.010	Panthera_pardus
ENSPKIG00000006069	upf1	94	92.253	ENSPTIG00000010159	UPF1	93	92.253	Panthera_tigris_altaica
ENSPKIG00000006069	upf1	99	92.075	ENSPTRG00000010721	UPF1	94	92.170	Pan_troglodytes
ENSPKIG00000006069	upf1	99	92.075	ENSPANG00000008847	UPF1	94	92.170	Papio_anubis
ENSPKIG00000006069	upf1	64	96.391	ENSPSIG00000009491	UPF1	86	96.391	Pelodiscus_sinensis
ENSPKIG00000006069	upf1	95	95.344	ENSPMGG00000017327	upf1	91	94.141	Periophthalmus_magnuspinnatus
ENSPKIG00000006069	upf1	99	91.533	ENSPEMG00000001085	Upf1	91	93.981	Peromyscus_maniculatus_bairdii
ENSPKIG00000006069	upf1	98	88.109	ENSPMAG00000001206	upf1	92	88.109	Petromyzon_marinus
ENSPKIG00000006069	upf1	97	94.824	ENSPCIG00000006156	UPF1	91	94.922	Phascolarctos_cinereus
ENSPKIG00000006069	upf1	97	93.446	ENSPLAG00000018155	-	91	93.446	Poecilia_latipinna
ENSPKIG00000006069	upf1	95	95.871	ENSPLAG00000016232	-	92	94.940	Poecilia_latipinna
ENSPKIG00000006069	upf1	95	95.972	ENSPMEG00000016319	-	92	95.040	Poecilia_mexicana
ENSPKIG00000006069	upf1	95	94.742	ENSPMEG00000011443	-	90	94.742	Poecilia_mexicana
ENSPKIG00000006069	upf1	97	93.657	ENSPREG00000009940	upf1	91	93.657	Poecilia_reticulata
ENSPKIG00000006069	upf1	95	95.770	ENSPREG00000011247	-	92	94.571	Poecilia_reticulata
ENSPKIG00000006069	upf1	96	88.921	ENSPPYG00000009752	UPF1	91	88.533	Pongo_abelii
ENSPKIG00000006069	upf1	74	100.000	ENSPCAG00000012962	UPF1	70	100.000	Procavia_capensis
ENSPKIG00000006069	upf1	97	94.461	ENSPCOG00000023813	UPF1	91	94.558	Propithecus_coquereli
ENSPKIG00000006069	upf1	68	95.336	ENSPVAG00000003183	UPF1	65	95.336	Pteropus_vampyrus
ENSPKIG00000006069	upf1	95	96.270	ENSPNYG00000016731	-	91	95.333	Pundamilia_nyererei
ENSPKIG00000006069	upf1	95	96.862	ENSPNYG00000003694	upf1	92	94.701	Pundamilia_nyererei
ENSPKIG00000006069	upf1	97	96.922	ENSPNAG00000025614	upf1	91	96.922	Pygocentrus_nattereri
ENSPKIG00000006069	upf1	97	94.608	ENSRNOG00000020134	Upf1	91	94.706	Rattus_norvegicus
ENSPKIG00000006069	upf1	94	91.001	ENSRBIG00000013894	UPF1	87	96.825	Rhinopithecus_bieti
ENSPKIG00000006069	upf1	94	93.529	ENSRROG00000040935	UPF1	91	93.529	Rhinopithecus_roxellana
ENSPKIG00000006069	upf1	77	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSPKIG00000006069	upf1	94	93.522	ENSSBOG00000023632	UPF1	90	93.522	Saimiri_boliviensis_boliviensis
ENSPKIG00000006069	upf1	91	96.432	ENSSHAG00000010499	UPF1	90	96.432	Sarcophilus_harrisii
ENSPKIG00000006069	upf1	96	98.601	ENSSFOG00015021095	upf1	91	98.601	Scleropages_formosus
ENSPKIG00000006069	upf1	95	96.274	ENSSMAG00000021018	-	91	95.337	Scophthalmus_maximus
ENSPKIG00000006069	upf1	95	96.037	ENSSMAG00000005055	upf1	90	94.632	Scophthalmus_maximus
ENSPKIG00000006069	upf1	97	95.924	ENSSDUG00000013320	upf1	90	95.924	Seriola_dumerili
ENSPKIG00000006069	upf1	95	96.375	ENSSDUG00000009629	-	91	95.437	Seriola_dumerili
ENSPKIG00000006069	upf1	95	96.375	ENSSLDG00000006878	-	91	95.437	Seriola_lalandi_dorsalis
ENSPKIG00000006069	upf1	95	97.169	ENSSLDG00000020868	upf1	89	97.169	Seriola_lalandi_dorsalis
ENSPKIG00000006069	upf1	96	95.648	ENSSPUG00000010538	UPF1	90	97.149	Sphenodon_punctatus
ENSPKIG00000006069	upf1	95	96.173	ENSSPAG00000011521	-	92	95.238	Stegastes_partitus
ENSPKIG00000006069	upf1	95	94.422	ENSSPAG00000000003	upf1	91	93.781	Stegastes_partitus
ENSPKIG00000006069	upf1	99	92.512	ENSSSCG00000039301	UPF1	94	94.393	Sus_scrofa
ENSPKIG00000006069	upf1	87	89.149	ENSTGUG00000001057	UPF1	100	93.935	Taeniopygia_guttata
ENSPKIG00000006069	upf1	95	95.166	ENSTRUG00000005131	-	92	93.602	Takifugu_rubripes
ENSPKIG00000006069	upf1	96	94.394	ENSTRUG00000000150	upf1	92	94.394	Takifugu_rubripes
ENSPKIG00000006069	upf1	99	88.626	ENSTTRG00000011544	UPF1	91	90.900	Tursiops_truncatus
ENSPKIG00000006069	upf1	99	92.344	ENSUAMG00000007093	UPF1	91	94.829	Ursus_americanus
ENSPKIG00000006069	upf1	99	90.550	ENSUMAG00000006652	UPF1	93	94.495	Ursus_maritimus
ENSPKIG00000006069	upf1	99	92.344	ENSVVUG00000007797	UPF1	91	94.829	Vulpes_vulpes
ENSPKIG00000006069	upf1	99	77.645	ENSXETG00000013602	upf1	96	77.645	Xenopus_tropicalis
ENSPKIG00000006069	upf1	89	96.104	ENSXCOG00000005764	-	91	95.101	Xiphophorus_couchianus
ENSPKIG00000006069	upf1	96	94.589	ENSXCOG00000015275	-	92	94.589	Xiphophorus_couchianus
ENSPKIG00000006069	upf1	97	93.843	ENSXMAG00000001703	-	93	93.843	Xiphophorus_maculatus
ENSPKIG00000006069	upf1	95	95.871	ENSXMAG00000002540	-	92	94.940	Xiphophorus_maculatus