EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000006154 (Gene tree)
Gene ID: 111860164
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 6759 bases
Position: chrPGUA01000005.1:402971-409729
Accession: 111860164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000021955	LSM	PF01423.22	1.2e-16	1	1
ENSPKIP00000021987	LSM	PF01423.22	2.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000002607	-	5074	-	ENSPKIP00000021955	141 (aa)	XP_023699349	UPI000CD62157
ENSPKIT00000002638	-	390	-	ENSPKIP00000021987	129 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000006154's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03018	RNA degradation	KEGG
pki03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000006154's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000006154	lsm4	50	35.714	ENSPKIG00000003728	oscp1a	56	35.714
ENSPKIG00000006154	lsm4	69	32.000	ENSPKIG00000007028	si:ch73-14h10.2	100	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000006154	lsm4	62	98.864	ENSG00000130520	LSM4	99	81.752	Homo_sapiens
ENSPKIG00000006154	lsm4	100	84.868	ENSAPOG00000005643	lsm4	100	84.868	Acanthochromis_polyacanthus
ENSPKIG00000006154	lsm4	62	98.851	ENSAMEG00000011162	LSM4	93	81.618	Ailuropoda_melanoleuca
ENSPKIG00000006154	lsm4	100	86.577	ENSAOCG00000006414	lsm4	100	86.577	Amphiprion_ocellaris
ENSPKIG00000006154	lsm4	100	86.000	ENSAPEG00000006238	lsm4	100	86.000	Amphiprion_percula
ENSPKIG00000006154	lsm4	100	83.660	ENSATEG00000016559	lsm4	100	84.314	Anabas_testudineus
ENSPKIG00000006154	lsm4	62	98.864	ENSANAG00000034659	LSM4	99	81.752	Aotus_nancymaae
ENSPKIG00000006154	lsm4	100	85.135	ENSACLG00000022738	lsm4	100	85.811	Astatotilapia_calliptera
ENSPKIG00000006154	lsm4	100	95.775	ENSAMXG00000016932	lsm4	100	95.775	Astyanax_mexicanus
ENSPKIG00000006154	lsm4	62	98.864	ENSBTAG00000008578	LSM4	99	81.752	Bos_taurus
ENSPKIG00000006154	lsm4	59	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSPKIG00000006154	lsm4	62	98.864	ENSCJAG00000014171	LSM4	99	81.752	Callithrix_jacchus
ENSPKIG00000006154	lsm4	62	98.864	ENSCAFG00000014900	LSM4	90	81.752	Canis_familiaris
ENSPKIG00000006154	lsm4	62	98.864	ENSCAFG00020012137	LSM4	99	81.752	Canis_lupus_dingo
ENSPKIG00000006154	lsm4	62	98.851	ENSCHIG00000010928	LSM4	90	81.618	Capra_hircus
ENSPKIG00000006154	lsm4	62	97.727	ENSTSYG00000030906	LSM4	99	81.022	Carlito_syrichta
ENSPKIG00000006154	lsm4	62	97.727	ENSCAPG00000014140	LSM4	99	81.295	Cavia_aperea
ENSPKIG00000006154	lsm4	62	97.727	ENSCPOG00000024117	LSM4	99	81.295	Cavia_porcellus
ENSPKIG00000006154	lsm4	62	98.864	ENSCCAG00000036308	LSM4	99	81.752	Cebus_capucinus
ENSPKIG00000006154	lsm4	62	98.864	ENSCATG00000029311	LSM4	99	81.752	Cercocebus_atys
ENSPKIG00000006154	lsm4	62	98.864	ENSCLAG00000010828	LSM4	99	80.292	Chinchilla_lanigera
ENSPKIG00000006154	lsm4	62	98.864	ENSCSAG00000005370	LSM4	99	81.752	Chlorocebus_sabaeus
ENSPKIG00000006154	lsm4	94	93.233	ENSCPBG00000012925	LSM4	96	93.233	Chrysemys_picta_bellii
ENSPKIG00000006154	lsm4	61	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSPKIG00000006154	lsm4	61	93.023	ENSCSAVG00000008596	-	74	92.391	Ciona_savignyi
ENSPKIG00000006154	lsm4	62	98.864	ENSCANG00000043686	LSM4	99	81.752	Colobus_angolensis_palliatus
ENSPKIG00000006154	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	80.292	Cricetulus_griseus_chok1gshd
ENSPKIG00000006154	lsm4	62	95.402	ENSCGRG00000009398	Lsm4	99	80.147	Cricetulus_griseus_crigri
ENSPKIG00000006154	lsm4	100	83.099	ENSCSEG00000016127	lsm4	100	90.909	Cynoglossus_semilaevis
ENSPKIG00000006154	lsm4	100	87.121	ENSCVAG00000021828	lsm4	100	87.121	Cyprinodon_variegatus
ENSPKIG00000006154	lsm4	100	89.583	ENSCVAG00000010601	lsm4	100	89.583	Cyprinodon_variegatus
ENSPKIG00000006154	lsm4	96	89.437	ENSDARG00000023852	lsm4	99	88.732	Danio_rerio
ENSPKIG00000006154	lsm4	62	97.727	ENSDORG00000024225	Lsm4	99	80.292	Dipodomys_ordii
ENSPKIG00000006154	lsm4	69	82.474	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSPKIG00000006154	lsm4	57	97.260	ENSETEG00000007762	-	98	79.508	Echinops_telfairi
ENSPKIG00000006154	lsm4	53	93.333	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSPKIG00000006154	lsm4	62	98.864	ENSECAG00000010141	LSM4	56	81.752	Equus_caballus
ENSPKIG00000006154	lsm4	93	95.489	ENSELUG00000012821	lsm4	100	95.489	Esox_lucius
ENSPKIG00000006154	lsm4	62	98.864	ENSFCAG00000040580	LSM4	99	81.752	Felis_catus
ENSPKIG00000006154	lsm4	94	92.424	ENSFALG00000009478	LSM4	96	92.424	Ficedula_albicollis
ENSPKIG00000006154	lsm4	62	98.851	ENSFDAG00000010124	LSM4	99	81.618	Fukomys_damarensis
ENSPKIG00000006154	lsm4	99	83.673	ENSGMOG00000007729	lsm4	99	87.075	Gadus_morhua
ENSPKIG00000006154	lsm4	94	92.481	ENSGALG00000003385	LSM4	96	92.481	Gallus_gallus
ENSPKIG00000006154	lsm4	100	88.194	ENSGAFG00000004903	lsm4	97	85.271	Gambusia_affinis
ENSPKIG00000006154	lsm4	100	84.000	ENSGACG00000008140	lsm4	100	83.333	Gasterosteus_aculeatus
ENSPKIG00000006154	lsm4	94	93.233	ENSGAGG00000017812	LSM4	96	93.233	Gopherus_agassizii
ENSPKIG00000006154	lsm4	62	98.864	ENSGGOG00000012914	-	99	81.752	Gorilla_gorilla
ENSPKIG00000006154	lsm4	100	85.714	ENSHBUG00000008858	lsm4	80	86.395	Haplochromis_burtoni
ENSPKIG00000006154	lsm4	96	79.562	ENSHGLG00000006568	LSM4	99	79.562	Heterocephalus_glaber_female
ENSPKIG00000006154	lsm4	66	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSPKIG00000006154	lsm4	100	89.510	ENSHCOG00000008819	lsm4	100	89.510	Hippocampus_comes
ENSPKIG00000006154	lsm4	100	96.479	ENSIPUG00000005368	Lsm4	100	96.479	Ictalurus_punctatus
ENSPKIG00000006154	lsm4	62	98.864	ENSSTOG00000016494	LSM4	99	81.752	Ictidomys_tridecemlineatus
ENSPKIG00000006154	lsm4	62	96.591	ENSJJAG00000017420	Lsm4	99	80.292	Jaculus_jaculus
ENSPKIG00000006154	lsm4	100	85.517	ENSKMAG00000005073	lsm4	100	88.276	Kryptolebias_marmoratus
ENSPKIG00000006154	lsm4	100	86.000	ENSLBEG00000027930	lsm4	100	86.000	Labrus_bergylta
ENSPKIG00000006154	lsm4	96	86.861	ENSLACG00000015861	LSM4	99	91.367	Latimeria_chalumnae
ENSPKIG00000006154	lsm4	100	96.454	ENSLOCG00000002025	lsm4	100	96.454	Lepisosteus_oculatus
ENSPKIG00000006154	lsm4	62	97.701	ENSLAFG00000017459	LSM4	98	81.618	Loxodonta_africana
ENSPKIG00000006154	lsm4	62	98.864	ENSMFAG00000031194	LSM4	99	81.752	Macaca_fascicularis
ENSPKIG00000006154	lsm4	62	98.864	ENSMMUG00000004405	LSM4	99	81.752	Macaca_mulatta
ENSPKIG00000006154	lsm4	62	98.864	ENSMNEG00000042899	LSM4	99	81.752	Macaca_nemestrina
ENSPKIG00000006154	lsm4	62	98.864	ENSMLEG00000027948	LSM4	99	81.752	Mandrillus_leucophaeus
ENSPKIG00000006154	lsm4	100	89.510	ENSMAMG00000006190	lsm4	100	83.803	Mastacembelus_armatus
ENSPKIG00000006154	lsm4	100	85.714	ENSMZEG00005016420	lsm4	100	86.395	Maylandia_zebra
ENSPKIG00000006154	lsm4	94	84.962	ENSMGAG00000004976	LSM4	96	89.474	Meleagris_gallopavo
ENSPKIG00000006154	lsm4	71	94.000	ENSMICG00000000222	LSM4	99	81.022	Microcebus_murinus
ENSPKIG00000006154	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	80.292	Microtus_ochrogaster
ENSPKIG00000006154	lsm4	57	100.000	ENSMODG00000015044	-	98	81.148	Monodelphis_domestica
ENSPKIG00000006154	lsm4	100	88.889	ENSMALG00000018159	lsm4	100	88.889	Monopterus_albus
ENSPKIG00000006154	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	80.292	Mus_caroli
ENSPKIG00000006154	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	97	86.000	Mus_musculus
ENSPKIG00000006154	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	80.292	Mus_pahari
ENSPKIG00000006154	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	80.292	Mus_spretus
ENSPKIG00000006154	lsm4	62	98.864	ENSMPUG00000015589	LSM4	99	81.752	Mustela_putorius_furo
ENSPKIG00000006154	lsm4	62	98.851	ENSMLUG00000004010	LSM4	98	81.618	Myotis_lucifugus
ENSPKIG00000006154	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	80.292	Nannospalax_galili
ENSPKIG00000006154	lsm4	77	95.413	ENSNBRG00000022150	lsm4	67	95.413	Neolamprologus_brichardi
ENSPKIG00000006154	lsm4	94	81.967	ENSMEUG00000013229	LSM4	98	77.049	Notamacropus_eugenii
ENSPKIG00000006154	lsm4	60	96.154	ENSOPRG00000005575	LSM4	98	76.860	Ochotona_princeps
ENSPKIG00000006154	lsm4	62	98.864	ENSODEG00000020549	-	99	81.022	Octodon_degus
ENSPKIG00000006154	lsm4	96	77.206	ENSODEG00000004519	-	99	72.263	Octodon_degus
ENSPKIG00000006154	lsm4	96	65.942	ENSODEG00000011712	-	98	65.942	Octodon_degus
ENSPKIG00000006154	lsm4	100	85.135	ENSONIG00000012724	lsm4	100	85.811	Oreochromis_niloticus
ENSPKIG00000006154	lsm4	58	98.667	ENSOANG00000007434	LSM4	89	92.233	Ornithorhynchus_anatinus
ENSPKIG00000006154	lsm4	100	87.586	ENSORLG00000008391	lsm4	100	87.586	Oryzias_latipes
ENSPKIG00000006154	lsm4	100	87.586	ENSORLG00020014829	lsm4	100	87.586	Oryzias_latipes_hni
ENSPKIG00000006154	lsm4	100	86.897	ENSORLG00015010205	lsm4	100	86.897	Oryzias_latipes_hsok
ENSPKIG00000006154	lsm4	100	86.207	ENSOMEG00000003606	lsm4	100	86.207	Oryzias_melastigma
ENSPKIG00000006154	lsm4	70	93.939	ENSOGAG00000027992	LSM4	99	75.172	Otolemur_garnettii
ENSPKIG00000006154	lsm4	62	98.851	ENSOARG00000012553	LSM4	95	80.992	Ovis_aries
ENSPKIG00000006154	lsm4	62	98.864	ENSPPAG00000044045	-	99	81.752	Pan_paniscus
ENSPKIG00000006154	lsm4	62	98.864	ENSPPRG00000018264	LSM4	99	81.752	Panthera_pardus
ENSPKIG00000006154	lsm4	62	98.851	ENSPTIG00000006306	LSM4	99	81.618	Panthera_tigris_altaica
ENSPKIG00000006154	lsm4	62	98.864	ENSPTRG00000031470	LSM4	99	81.752	Pan_troglodytes
ENSPKIG00000006154	lsm4	62	98.864	ENSPANG00000014399	LSM4	99	81.752	Papio_anubis
ENSPKIG00000006154	lsm4	94	92.424	ENSPSIG00000012358	LSM4	96	92.424	Pelodiscus_sinensis
ENSPKIG00000006154	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	80.292	Peromyscus_maniculatus_bairdii
ENSPKIG00000006154	lsm4	100	88.194	ENSPFOG00000000570	lsm4	76	88.194	Poecilia_formosa
ENSPKIG00000006154	lsm4	100	89.583	ENSPLAG00000016267	lsm4	100	88.194	Poecilia_latipinna
ENSPKIG00000006154	lsm4	100	88.194	ENSPMEG00000016378	lsm4	100	88.194	Poecilia_mexicana
ENSPKIG00000006154	lsm4	100	88.889	ENSPREG00000011290	lsm4	76	88.889	Poecilia_reticulata
ENSPKIG00000006154	lsm4	62	98.864	ENSPPYG00000009736	LSM4	99	81.752	Pongo_abelii
ENSPKIG00000006154	lsm4	57	97.260	ENSPCAG00000008513	LSM4	98	79.508	Procavia_capensis
ENSPKIG00000006154	lsm4	71	94.000	ENSPCOG00000019837	LSM4	99	81.022	Propithecus_coquereli
ENSPKIG00000006154	lsm4	62	98.864	ENSPVAG00000015383	LSM4	99	81.752	Pteropus_vampyrus
ENSPKIG00000006154	lsm4	100	85.714	ENSPNYG00000016794	lsm4	100	86.395	Pundamilia_nyererei
ENSPKIG00000006154	lsm4	95	94.815	ENSPNAG00000016598	lsm4	100	94.815	Pygocentrus_nattereri
ENSPKIG00000006154	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	80.292	Rattus_norvegicus
ENSPKIG00000006154	lsm4	62	98.864	ENSRBIG00000024717	LSM4	99	81.752	Rhinopithecus_bieti
ENSPKIG00000006154	lsm4	62	98.864	ENSRROG00000045706	LSM4	99	81.752	Rhinopithecus_roxellana
ENSPKIG00000006154	lsm4	59	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSPKIG00000006154	lsm4	57	98.630	ENSSBOG00000022455	LSM4	98	79.675	Saimiri_boliviensis_boliviensis
ENSPKIG00000006154	lsm4	62	100.000	ENSSHAG00000011559	LSM4	99	83.212	Sarcophilus_harrisii
ENSPKIG00000006154	lsm4	100	97.163	ENSSFOG00015021067	lsm4	100	97.163	Scleropages_formosus
ENSPKIG00000006154	lsm4	100	76.667	ENSSMAG00000021020	lsm4	100	80.000	Scophthalmus_maximus
ENSPKIG00000006154	lsm4	100	77.381	ENSSDUG00000009588	lsm4	100	77.381	Seriola_dumerili
ENSPKIG00000006154	lsm4	100	76.923	ENSSLDG00000006827	lsm4	100	76.923	Seriola_lalandi_dorsalis
ENSPKIG00000006154	lsm4	62	100.000	ENSSPUG00000010166	LSM4	64	96.970	Sphenodon_punctatus
ENSPKIG00000006154	lsm4	100	84.868	ENSSPAG00000011615	lsm4	100	84.868	Stegastes_partitus
ENSPKIG00000006154	lsm4	62	98.864	ENSSSCG00000034314	LSM4	99	81.752	Sus_scrofa
ENSPKIG00000006154	lsm4	100	87.500	ENSTRUG00000021737	lsm4	100	87.500	Takifugu_rubripes
ENSPKIG00000006154	lsm4	100	87.500	ENSTNIG00000010191	lsm4	100	87.500	Tetraodon_nigroviridis
ENSPKIG00000006154	lsm4	62	98.864	ENSUAMG00000000665	LSM4	98	81.618	Ursus_americanus
ENSPKIG00000006154	lsm4	62	98.864	ENSUMAG00000009013	LSM4	99	81.752	Ursus_maritimus
ENSPKIG00000006154	lsm4	62	98.851	ENSVVUG00000008136	LSM4	70	81.618	Vulpes_vulpes
ENSPKIG00000006154	lsm4	96	88.971	ENSXETG00000024933	lsm4	99	88.971	Xenopus_tropicalis
ENSPKIG00000006154	lsm4	100	88.194	ENSXMAG00000026672	lsm4	76	88.194	Xiphophorus_maculatus