EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000006405 (Gene tree)
Gene ID: 111843209
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 19898 bases
Position: chrPGUA01000100.1:1160401-1180298
Accession: 111843209
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000022372	MMR_HSR1	PF01926.23	2.2e-08	1	1
ENSPKIP00000022380	MMR_HSR1	PF01926.23	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000003043	-	5626	-	ENSPKIP00000022380	473 (aa)	XP_023666355	UPI000CD6647C
ENSPKIT00000003034	-	5662	-	ENSPKIP00000022372	485 (aa)	XP_023666354	UPI000CD619F2

Gene Model

Click here to download ENSPKIG00000006405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000006405's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000006405	srl	87	31.311	ENSPKIG00000023165	-	75	31.311
ENSPKIG00000006405	srl	100	80.761	ENSPKIG00000024974	SRL	94	80.761
ENSPKIG00000006405	srl	76	34.444	ENSPKIG00000013262	EHD2	65	34.444
ENSPKIG00000006405	srl	79	33.512	ENSPKIG00000001422	ehd3	70	33.506
ENSPKIG00000006405	srl	76	34.167	ENSPKIG00000016765	ehd2a	65	34.167
ENSPKIG00000006405	srl	61	36.678	ENSPKIG00000020297	-	70	36.678

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000006405	srl	97	83.151	ENSG00000185739	SRL	99	84.884	Homo_sapiens
ENSPKIG00000006405	srl	93	79.186	ENSAPOG00000012432	SRL	98	79.186	Acanthochromis_polyacanthus
ENSPKIG00000006405	srl	100	91.561	ENSAPOG00000018093	srl	99	93.197	Acanthochromis_polyacanthus
ENSPKIG00000006405	srl	98	82.073	ENSAMEG00000010862	SRL	52	82.073	Ailuropoda_melanoleuca
ENSPKIG00000006405	srl	96	91.630	ENSACIG00000015799	srl	100	91.630	Amphilophus_citrinellus
ENSPKIG00000006405	srl	95	77.679	ENSACIG00000015419	SRL	99	77.679	Amphilophus_citrinellus
ENSPKIG00000006405	srl	92	93.779	ENSAOCG00000007574	srl	100	93.779	Amphiprion_ocellaris
ENSPKIG00000006405	srl	97	77.489	ENSAOCG00000017049	SRL	100	77.706	Amphiprion_ocellaris
ENSPKIG00000006405	srl	97	73.536	ENSAPEG00000006533	SRL	100	74.675	Amphiprion_percula
ENSPKIG00000006405	srl	100	91.772	ENSAPEG00000006911	srl	100	91.772	Amphiprion_percula
ENSPKIG00000006405	srl	93	78.022	ENSATEG00000009643	SRL	52	78.242	Anabas_testudineus
ENSPKIG00000006405	srl	100	90.722	ENSATEG00000024315	srl	100	91.152	Anabas_testudineus
ENSPKIG00000006405	srl	100	80.123	ENSACAG00000016380	SRL	89	82.209	Anolis_carolinensis
ENSPKIG00000006405	srl	95	75.922	ENSACLG00000024674	SRL	57	75.922	Astatotilapia_calliptera
ENSPKIG00000006405	srl	100	90.309	ENSACLG00000027685	srl	100	90.309	Astatotilapia_calliptera
ENSPKIG00000006405	srl	93	74.545	ENSAMXG00000038693	SRL	100	74.614	Astyanax_mexicanus
ENSPKIG00000006405	srl	99	92.797	ENSAMXG00000018789	srl	92	92.797	Astyanax_mexicanus
ENSPKIG00000006405	srl	93	84.354	ENSBTAG00000001078	SRL	56	84.354	Bos_taurus
ENSPKIG00000006405	srl	93	84.842	ENSCJAG00000019750	SRL	98	82.618	Callithrix_jacchus
ENSPKIG00000006405	srl	97	82.096	ENSCAFG00000019233	SRL	85	82.096	Canis_familiaris
ENSPKIG00000006405	srl	96	83.002	ENSCAFG00020025024	SRL	56	83.002	Canis_lupus_dingo
ENSPKIG00000006405	srl	99	80.810	ENSCHIG00000017927	SRL	57	82.895	Capra_hircus
ENSPKIG00000006405	srl	100	81.395	ENSTSYG00000007919	SRL	99	85.581	Carlito_syrichta
ENSPKIG00000006405	srl	93	83.937	ENSCPOG00000012643	SRL	100	80.550	Cavia_porcellus
ENSPKIG00000006405	srl	93	79.186	ENSCCAG00000032646	SRL	100	85.752	Cebus_capucinus
ENSPKIG00000006405	srl	97	82.789	ENSCATG00000032227	-	98	82.618	Cercocebus_atys
ENSPKIG00000006405	srl	93	83.710	ENSCLAG00000016242	SRL	100	80.338	Chinchilla_lanigera
ENSPKIG00000006405	srl	81	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSPKIG00000006405	srl	95	86.528	ENSCPBG00000026371	SRL	99	82.268	Chrysemys_picta_bellii
ENSPKIG00000006405	srl	88	61.244	ENSCING00000005231	-	93	61.244	Ciona_intestinalis
ENSPKIG00000006405	srl	96	83.516	ENSCANG00000035872	SRL	99	84.884	Colobus_angolensis_palliatus
ENSPKIG00000006405	srl	97	82.789	ENSCGRG00001016630	Srl	98	82.618	Cricetulus_griseus_chok1gshd
ENSPKIG00000006405	srl	97	82.789	ENSCGRG00000005458	Srl	98	82.618	Cricetulus_griseus_crigri
ENSPKIG00000006405	srl	100	89.218	ENSCSEG00000016151	srl	100	89.218	Cynoglossus_semilaevis
ENSPKIG00000006405	srl	99	74.255	ENSCSEG00000011866	SRL	94	74.468	Cynoglossus_semilaevis
ENSPKIG00000006405	srl	95	77.074	ENSCVAG00000022465	SRL	61	77.074	Cyprinodon_variegatus
ENSPKIG00000006405	srl	100	90.103	ENSCVAG00000003513	srl	100	90.535	Cyprinodon_variegatus
ENSPKIG00000006405	srl	80	78.906	ENSDARG00000112959	CABZ01072309.1	100	78.906	Danio_rerio
ENSPKIG00000006405	srl	100	91.134	ENSDARG00000104587	srl	100	91.134	Danio_rerio
ENSPKIG00000006405	srl	93	84.615	ENSDNOG00000011643	SRL	54	82.819	Dasypus_novemcinctus
ENSPKIG00000006405	srl	93	84.389	ENSDORG00000014807	Srl	100	80.973	Dipodomys_ordii
ENSPKIG00000006405	srl	78	66.223	ENSEBUG00000015937	srl	95	66.223	Eptatretus_burgeri
ENSPKIG00000006405	srl	93	85.261	ENSEASG00005000942	SRL	53	85.261	Equus_asinus_asinus
ENSPKIG00000006405	srl	99	81.780	ENSECAG00000024219	SRL	99	81.780	Equus_caballus
ENSPKIG00000006405	srl	100	87.064	ENSELUG00000015616	srl	100	87.064	Esox_lucius
ENSPKIG00000006405	srl	100	80.761	ENSFCAG00000022075	SRL	100	80.761	Felis_catus
ENSPKIG00000006405	srl	96	81.858	ENSFALG00000004328	SRL	64	82.040	Ficedula_albicollis
ENSPKIG00000006405	srl	93	84.615	ENSFDAG00000006199	SRL	100	81.395	Fukomys_damarensis
ENSPKIG00000006405	srl	100	88.683	ENSFHEG00000011239	srl	100	88.683	Fundulus_heteroclitus
ENSPKIG00000006405	srl	100	73.306	ENSFHEG00000011854	SRL	99	77.009	Fundulus_heteroclitus
ENSPKIG00000006405	srl	93	90.728	ENSGMOG00000014954	srl	99	90.728	Gadus_morhua
ENSPKIG00000006405	srl	98	81.935	ENSGALG00000038884	SRL	98	81.935	Gallus_gallus
ENSPKIG00000006405	srl	95	79.018	ENSGAFG00000016984	SRL	99	79.018	Gambusia_affinis
ENSPKIG00000006405	srl	100	89.506	ENSGAFG00000000010	srl	100	89.506	Gambusia_affinis
ENSPKIG00000006405	srl	94	91.429	ENSGACG00000011332	srl	100	91.429	Gasterosteus_aculeatus
ENSPKIG00000006405	srl	97	83.151	ENSGGOG00000011312	-	98	82.403	Gorilla_gorilla
ENSPKIG00000006405	srl	95	76.356	ENSHBUG00000015710	SRL	57	76.356	Haplochromis_burtoni
ENSPKIG00000006405	srl	100	90.309	ENSHBUG00000007581	srl	100	90.309	Haplochromis_burtoni
ENSPKIG00000006405	srl	93	84.842	ENSHGLG00000015271	SRL	100	81.395	Heterocephalus_glaber_female
ENSPKIG00000006405	srl	93	84.842	ENSHGLG00100019378	SRL	100	81.395	Heterocephalus_glaber_male
ENSPKIG00000006405	srl	93	76.652	ENSHCOG00000001012	SRL	50	76.652	Hippocampus_comes
ENSPKIG00000006405	srl	100	91.158	ENSHCOG00000008687	srl	99	91.964	Hippocampus_comes
ENSPKIG00000006405	srl	100	91.134	ENSIPUG00000012513	srl	100	91.134	Ictalurus_punctatus
ENSPKIG00000006405	srl	92	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSPKIG00000006405	srl	97	82.353	ENSSTOG00000021151	-	100	80.973	Ictidomys_tridecemlineatus
ENSPKIG00000006405	srl	100	80.973	ENSJJAG00000016400	Srl	100	80.973	Jaculus_jaculus
ENSPKIG00000006405	srl	98	89.263	ENSKMAG00000014115	srl	93	92.874	Kryptolebias_marmoratus
ENSPKIG00000006405	srl	93	79.592	ENSKMAG00000019537	SRL	100	79.592	Kryptolebias_marmoratus
ENSPKIG00000006405	srl	93	78.281	ENSLBEG00000013811	SRL	99	76.356	Labrus_bergylta
ENSPKIG00000006405	srl	100	89.006	ENSLBEG00000026643	srl	100	89.006	Labrus_bergylta
ENSPKIG00000006405	srl	100	82.887	ENSLACG00000002825	SRL	100	83.850	Latimeria_chalumnae
ENSPKIG00000006405	srl	99	89.149	ENSLOCG00000002644	srl	99	89.149	Lepisosteus_oculatus
ENSPKIG00000006405	srl	93	84.163	ENSLAFG00000006329	SRL	50	84.163	Loxodonta_africana
ENSPKIG00000006405	srl	91	84.884	ENSMFAG00000037383	SRL	99	84.884	Macaca_fascicularis
ENSPKIG00000006405	srl	97	83.007	ENSMNEG00000019236	-	97	83.007	Macaca_nemestrina
ENSPKIG00000006405	srl	96	76.484	ENSMLEG00000032156	SRL	98	75.751	Mandrillus_leucophaeus
ENSPKIG00000006405	srl	93	77.974	ENSMAMG00000013756	SRL	53	78.414	Mastacembelus_armatus
ENSPKIG00000006405	srl	94	93.018	ENSMAMG00000023322	srl	99	89.574	Mastacembelus_armatus
ENSPKIG00000006405	srl	95	76.139	ENSMZEG00005004010	SRL	58	76.139	Maylandia_zebra
ENSPKIG00000006405	srl	100	90.309	ENSMZEG00005004548	srl	100	90.309	Maylandia_zebra
ENSPKIG00000006405	srl	96	82.237	ENSMGAG00000009342	SRL	95	84.960	Meleagris_gallopavo
ENSPKIG00000006405	srl	97	83.442	ENSMICG00000032307	SRL	99	82.766	Microcebus_murinus
ENSPKIG00000006405	srl	100	80.761	ENSMOCG00000008208	Srl	100	80.761	Microtus_ochrogaster
ENSPKIG00000006405	srl	93	76.856	ENSMMOG00000021572	SRL	99	76.856	Mola_mola
ENSPKIG00000006405	srl	96	91.391	ENSMMOG00000013970	srl	100	91.391	Mola_mola
ENSPKIG00000006405	srl	96	83.186	ENSMODG00000016380	-	51	83.186	Monodelphis_domestica
ENSPKIG00000006405	srl	100	89.429	ENSMALG00000005039	srl	99	91.295	Monopterus_albus
ENSPKIG00000006405	srl	89	78.759	ENSMALG00000000670	SRL	98	78.759	Monopterus_albus
ENSPKIG00000006405	srl	97	82.571	MGP_CAROLIEiJ_G0020400	Srl	100	81.395	Mus_caroli
ENSPKIG00000006405	srl	97	82.571	ENSMUSG00000022519	Srl	100	81.395	Mus_musculus
ENSPKIG00000006405	srl	93	84.389	MGP_PahariEiJ_G0016108	Srl	50	82.353	Mus_pahari
ENSPKIG00000006405	srl	97	82.571	MGP_SPRETEiJ_G0021294	Srl	100	81.395	Mus_spretus
ENSPKIG00000006405	srl	93	84.389	ENSMPUG00000015025	SRL	54	84.389	Mustela_putorius_furo
ENSPKIG00000006405	srl	98	82.900	ENSMLUG00000030733	SRL	58	82.900	Myotis_lucifugus
ENSPKIG00000006405	srl	93	84.842	ENSNGAG00000019741	Srl	100	81.395	Nannospalax_galili
ENSPKIG00000006405	srl	95	76.139	ENSNBRG00000002422	SRL	58	75.333	Neolamprologus_brichardi
ENSPKIG00000006405	srl	100	90.063	ENSNBRG00000023775	srl	100	90.063	Neolamprologus_brichardi
ENSPKIG00000006405	srl	93	78.959	ENSNLEG00000029051	SRL	98	76.609	Nomascus_leucogenys
ENSPKIG00000006405	srl	93	78.281	ENSOPRG00000000477	-	52	78.281	Ochotona_princeps
ENSPKIG00000006405	srl	93	84.163	ENSODEG00000013256	SRL	100	80.550	Octodon_degus
ENSPKIG00000006405	srl	100	90.103	ENSONIG00000005192	srl	100	90.103	Oreochromis_niloticus
ENSPKIG00000006405	srl	96	82.276	ENSOCUG00000025140	SRL	50	82.276	Oryctolagus_cuniculus
ENSPKIG00000006405	srl	100	89.897	ENSORLG00000008291	srl	97	89.897	Oryzias_latipes
ENSPKIG00000006405	srl	94	77.252	ENSORLG00000015064	SRL	97	77.252	Oryzias_latipes
ENSPKIG00000006405	srl	94	77.477	ENSORLG00020018173	SRL	97	77.477	Oryzias_latipes_hni
ENSPKIG00000006405	srl	100	89.897	ENSORLG00020019784	srl	85	89.897	Oryzias_latipes_hni
ENSPKIG00000006405	srl	100	89.485	ENSORLG00015009342	srl	97	89.485	Oryzias_latipes_hsok
ENSPKIG00000006405	srl	94	77.477	ENSORLG00015019063	SRL	97	77.477	Oryzias_latipes_hsok
ENSPKIG00000006405	srl	95	75.271	ENSOMEG00000005682	SRL	53	75.488	Oryzias_melastigma
ENSPKIG00000006405	srl	100	89.897	ENSOMEG00000010006	srl	98	92.500	Oryzias_melastigma
ENSPKIG00000006405	srl	96	82.057	ENSOGAG00000029266	SRL	56	82.057	Otolemur_garnettii
ENSPKIG00000006405	srl	99	81.197	ENSOARG00000003074	SRL	58	81.197	Ovis_aries
ENSPKIG00000006405	srl	98	82.251	ENSPPAG00000024919	-	99	84.884	Pan_paniscus
ENSPKIG00000006405	srl	100	80.761	ENSPPRG00000010274	SRL	99	84.419	Panthera_pardus
ENSPKIG00000006405	srl	100	80.761	ENSPTIG00000015162	SRL	99	84.419	Panthera_tigris_altaica
ENSPKIG00000006405	srl	98	82.251	ENSPTRG00000007712	SRL	99	84.884	Pan_troglodytes
ENSPKIG00000006405	srl	97	83.224	ENSPANG00000013804	SRL	98	83.224	Papio_anubis
ENSPKIG00000006405	srl	99	81.197	ENSPSIG00000008586	SRL	52	81.197	Pelodiscus_sinensis
ENSPKIG00000006405	srl	95	91.796	ENSPMGG00000021081	srl	97	91.796	Periophthalmus_magnuspinnatus
ENSPKIG00000006405	srl	94	77.201	ENSPMGG00000023505	-	100	77.201	Periophthalmus_magnuspinnatus
ENSPKIG00000006405	srl	93	84.615	ENSPEMG00000015842	Srl	98	82.403	Peromyscus_maniculatus_bairdii
ENSPKIG00000006405	srl	89	68.276	ENSPMAG00000004786	srl	99	68.276	Petromyzon_marinus
ENSPKIG00000006405	srl	95	83.370	ENSPCIG00000012128	SRL	99	83.370	Phascolarctos_cinereus
ENSPKIG00000006405	srl	100	89.300	ENSPFOG00000011408	srl	97	89.706	Poecilia_formosa
ENSPKIG00000006405	srl	95	77.009	ENSPLAG00000002932	SRL	99	77.009	Poecilia_latipinna
ENSPKIG00000006405	srl	97	89.760	ENSPLAG00000008017	srl	99	89.760	Poecilia_latipinna
ENSPKIG00000006405	srl	100	89.241	ENSPMEG00000006745	srl	99	89.760	Poecilia_mexicana
ENSPKIG00000006405	srl	95	75.810	ENSPMEG00000005890	SRL	61	75.810	Poecilia_mexicana
ENSPKIG00000006405	srl	100	89.506	ENSPREG00000007751	srl	99	91.518	Poecilia_reticulata
ENSPKIG00000006405	srl	95	77.728	ENSPREG00000000315	SRL	100	77.728	Poecilia_reticulata
ENSPKIG00000006405	srl	89	85.919	ENSPPYG00000007053	SRL	98	85.919	Pongo_abelii
ENSPKIG00000006405	srl	96	83.297	ENSPCAG00000003378	-	51	83.297	Procavia_capensis
ENSPKIG00000006405	srl	97	83.224	ENSPCOG00000023135	SRL	99	84.884	Propithecus_coquereli
ENSPKIG00000006405	srl	93	84.842	ENSPVAG00000006586	SRL	54	84.842	Pteropus_vampyrus
ENSPKIG00000006405	srl	100	90.515	ENSPNYG00000001200	srl	100	90.515	Pundamilia_nyererei
ENSPKIG00000006405	srl	95	76.139	ENSPNYG00000003423	SRL	57	76.139	Pundamilia_nyererei
ENSPKIG00000006405	srl	100	92.178	ENSPNAG00000023106	srl	100	92.178	Pygocentrus_nattereri
ENSPKIG00000006405	srl	93	77.098	ENSPNAG00000007361	-	91	77.098	Pygocentrus_nattereri
ENSPKIG00000006405	srl	97	82.353	ENSRNOG00000005269	Srl	51	82.353	Rattus_norvegicus
ENSPKIG00000006405	srl	97	82.789	ENSRBIG00000042358	SRL	51	82.789	Rhinopithecus_bieti
ENSPKIG00000006405	srl	93	84.842	ENSSBOG00000029273	SRL	98	82.618	Saimiri_boliviensis_boliviensis
ENSPKIG00000006405	srl	96	82.781	ENSSHAG00000011715	-	51	82.781	Sarcophilus_harrisii
ENSPKIG00000006405	srl	94	80.717	ENSSFOG00015021327	SRL	51	80.440	Scleropages_formosus
ENSPKIG00000006405	srl	100	95.052	ENSSFOG00015009773	srl	100	95.052	Scleropages_formosus
ENSPKIG00000006405	srl	93	78.242	ENSSMAG00000002232	SRL	50	78.242	Scophthalmus_maximus
ENSPKIG00000006405	srl	100	89.641	ENSSMAG00000016274	srl	100	90.084	Scophthalmus_maximus
ENSPKIG00000006405	srl	94	91.928	ENSSDUG00000010808	srl	98	91.928	Seriola_dumerili
ENSPKIG00000006405	srl	94	79.778	ENSSDUG00000009161	SRL	99	79.778	Seriola_dumerili
ENSPKIG00000006405	srl	97	90.832	ENSSLDG00000022024	srl	100	90.103	Seriola_lalandi_dorsalis
ENSPKIG00000006405	srl	94	79.386	ENSSLDG00000014601	SRL	100	80.044	Seriola_lalandi_dorsalis
ENSPKIG00000006405	srl	96	82.379	ENSSPUG00000016859	SRL	99	82.379	Sphenodon_punctatus
ENSPKIG00000006405	srl	93	79.365	ENSSPAG00000014254	SRL	98	79.365	Stegastes_partitus
ENSPKIG00000006405	srl	100	91.358	ENSSPAG00000019105	srl	100	91.358	Stegastes_partitus
ENSPKIG00000006405	srl	93	85.034	ENSSSCG00000007949	SRL	98	85.034	Sus_scrofa
ENSPKIG00000006405	srl	76	86.427	ENSTGUG00000016121	-	99	86.427	Taeniopygia_guttata
ENSPKIG00000006405	srl	96	82.018	ENSTGUG00000003951	-	99	82.018	Taeniopygia_guttata
ENSPKIG00000006405	srl	100	90.275	ENSTRUG00000006005	srl	100	90.275	Takifugu_rubripes
ENSPKIG00000006405	srl	89	79.236	ENSTRUG00000013310	SRL	55	79.236	Takifugu_rubripes
ENSPKIG00000006405	srl	97	91.028	ENSTNIG00000009739	srl	100	89.852	Tetraodon_nigroviridis
ENSPKIG00000006405	srl	93	84.163	ENSUAMG00000005701	SRL	55	84.163	Ursus_americanus
ENSPKIG00000006405	srl	93	84.389	ENSUMAG00000002574	SRL	55	84.389	Ursus_maritimus
ENSPKIG00000006405	srl	96	82.819	ENSVVUG00000016331	-	50	82.819	Vulpes_vulpes
ENSPKIG00000006405	srl	99	79.618	ENSXETG00000017313	srl	99	82.262	Xenopus_tropicalis
ENSPKIG00000006405	srl	89	92.671	ENSXCOG00000010424	srl	97	92.671	Xiphophorus_couchianus
ENSPKIG00000006405	srl	95	78.444	ENSXCOG00000014584	SRL	99	78.444	Xiphophorus_couchianus
ENSPKIG00000006405	srl	95	75.810	ENSXMAG00000027598	SRL	63	76.242	Xiphophorus_maculatus
ENSPKIG00000006405	srl	100	89.506	ENSXMAG00000004625	srl	95	89.506	Xiphophorus_maculatus