EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000007242 (Gene tree)
Gene ID: 111847554
Gene Symbol: smg7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 50584 bases
Position: chrPGUA01000018.1:4106773-4157356
Accession: 111847554
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000023833	EST1	PF10374.9	4.7e-25	1	1
ENSPKIP00000023776	EST1	PF10374.9	4.7e-25	1	1
ENSPKIP00000023833	EST1_DNA_bind	PF10373.9	2.1e-49	1	1
ENSPKIP00000023776	EST1_DNA_bind	PF10373.9	2.5e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000004465	-	5908	XM_023818827	ENSPKIP00000023776	1143 (aa)	XP_023674595	UPI000CD5FCA3
ENSPKIT00000004526	-	3228	-	ENSPKIP00000023833	1075 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000007242's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000007242's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000007242	smg7	99	68.500	ENSG00000116698	SMG7	86	92.405	Homo_sapiens
ENSPKIG00000007242	smg7	91	79.018	ENSAPOG00000009611	smg7	96	79.699	Acanthochromis_polyacanthus
ENSPKIG00000007242	smg7	96	69.000	ENSAMEG00000002357	SMG7	100	65.371	Ailuropoda_melanoleuca
ENSPKIG00000007242	smg7	97	67.509	ENSACIG00000015152	smg7	100	67.780	Amphilophus_citrinellus
ENSPKIG00000007242	smg7	100	71.476	ENSAOCG00000013538	smg7	100	71.725	Amphiprion_ocellaris
ENSPKIG00000007242	smg7	100	71.417	ENSAPEG00000007851	smg7	100	71.582	Amphiprion_percula
ENSPKIG00000007242	smg7	100	68.760	ENSATEG00000006931	smg7	100	68.512	Anabas_testudineus
ENSPKIG00000007242	smg7	99	65.937	ENSAPLG00000015811	SMG7	99	65.732	Anas_platyrhynchos
ENSPKIG00000007242	smg7	99	66.337	ENSACAG00000014989	SMG7	99	65.669	Anolis_carolinensis
ENSPKIG00000007242	smg7	99	68.000	ENSANAG00000028114	SMG7	89	89.024	Aotus_nancymaae
ENSPKIG00000007242	smg7	100	71.333	ENSACLG00000022079	smg7	100	71.000	Astatotilapia_calliptera
ENSPKIG00000007242	smg7	100	75.632	ENSAMXG00000020809	smg7	100	75.548	Astyanax_mexicanus
ENSPKIG00000007242	smg7	99	68.000	ENSBTAG00000008003	SMG7	99	64.179	Bos_taurus
ENSPKIG00000007242	smg7	99	68.317	ENSCJAG00000005135	SMG7	89	89.571	Callithrix_jacchus
ENSPKIG00000007242	smg7	99	68.000	ENSCAFG00000013276	SMG7	97	64.020	Canis_familiaris
ENSPKIG00000007242	smg7	100	68.000	ENSCAFG00020015475	SMG7	85	91.083	Canis_lupus_dingo
ENSPKIG00000007242	smg7	99	68.500	ENSCHIG00000018192	SMG7	99	63.453	Capra_hircus
ENSPKIG00000007242	smg7	99	68.812	ENSTSYG00000002667	SMG7	80	92.258	Carlito_syrichta
ENSPKIG00000007242	smg7	99	69.802	ENSCPOG00000008906	SMG7	100	63.331	Cavia_porcellus
ENSPKIG00000007242	smg7	99	65.905	ENSCCAG00000028596	SMG7	88	90.123	Cebus_capucinus
ENSPKIG00000007242	smg7	99	68.500	ENSCATG00000011063	SMG7	89	89.634	Cercocebus_atys
ENSPKIG00000007242	smg7	99	69.802	ENSCLAG00000010751	SMG7	99	64.912	Chinchilla_lanigera
ENSPKIG00000007242	smg7	99	68.500	ENSCSAG00000012654	SMG7	97	64.388	Chlorocebus_sabaeus
ENSPKIG00000007242	smg7	91	60.606	ENSCHOG00000010522	SMG7	89	59.893	Choloepus_hoffmanni
ENSPKIG00000007242	smg7	99	69.307	ENSCPBG00000015724	SMG7	99	66.750	Chrysemys_picta_bellii
ENSPKIG00000007242	smg7	99	65.965	ENSCANG00000015680	SMG7	89	89.634	Colobus_angolensis_palliatus
ENSPKIG00000007242	smg7	99	69.000	ENSCGRG00001013705	Smg7	99	64.676	Cricetulus_griseus_chok1gshd
ENSPKIG00000007242	smg7	99	69.000	ENSCGRG00000018401	Smg7	100	64.618	Cricetulus_griseus_crigri
ENSPKIG00000007242	smg7	99	67.842	ENSCVAG00000011842	smg7	100	68.165	Cyprinodon_variegatus
ENSPKIG00000007242	smg7	100	74.077	ENSDARG00000060767	smg7	100	74.413	Danio_rerio
ENSPKIG00000007242	smg7	99	70.500	ENSDORG00000007331	Smg7	93	71.287	Dipodomys_ordii
ENSPKIG00000007242	smg7	96	64.410	ENSETEG00000002654	SMG7	99	63.455	Echinops_telfairi
ENSPKIG00000007242	smg7	99	69.000	ENSEASG00005006524	SMG7	99	64.424	Equus_asinus_asinus
ENSPKIG00000007242	smg7	95	88.415	ENSECAG00000004313	SMG7	97	87.915	Equus_caballus
ENSPKIG00000007242	smg7	95	64.588	ENSEEUG00000002024	SMG7	94	62.359	Erinaceus_europaeus
ENSPKIG00000007242	smg7	100	74.539	ENSELUG00000010293	smg7	100	74.539	Esox_lucius
ENSPKIG00000007242	smg7	99	68.317	ENSFCAG00000010900	SMG7	99	64.770	Felis_catus
ENSPKIG00000007242	smg7	98	68.528	ENSFALG00000003047	SMG7	100	65.897	Ficedula_albicollis
ENSPKIG00000007242	smg7	99	67.000	ENSFDAG00000012121	SMG7	99	63.629	Fukomys_damarensis
ENSPKIG00000007242	smg7	99	67.075	ENSFHEG00000011073	smg7	99	66.930	Fundulus_heteroclitus
ENSPKIG00000007242	smg7	89	76.460	ENSGMOG00000004916	smg7	96	76.460	Gadus_morhua
ENSPKIG00000007242	smg7	99	65.879	ENSGALG00000004667	SMG7	99	65.557	Gallus_gallus
ENSPKIG00000007242	smg7	99	67.572	ENSGAFG00000019000	smg7	99	67.722	Gambusia_affinis
ENSPKIG00000007242	smg7	98	65.726	ENSGACG00000001634	smg7	100	65.925	Gasterosteus_aculeatus
ENSPKIG00000007242	smg7	99	68.500	ENSGGOG00000002342	SMG7	82	90.625	Gorilla_gorilla
ENSPKIG00000007242	smg7	100	71.500	ENSHBUG00000003726	smg7	100	71.000	Haplochromis_burtoni
ENSPKIG00000007242	smg7	98	67.500	ENSHGLG00000009353	SMG7	99	64.474	Heterocephalus_glaber_female
ENSPKIG00000007242	smg7	98	67.500	ENSHGLG00100009637	-	99	64.386	Heterocephalus_glaber_male
ENSPKIG00000007242	smg7	99	60.000	ENSHGLG00100004878	-	99	57.948	Heterocephalus_glaber_male
ENSPKIG00000007242	smg7	100	73.924	ENSIPUG00000016997	smg7	100	73.586	Ictalurus_punctatus
ENSPKIG00000007242	smg7	99	69.500	ENSSTOG00000000401	SMG7	93	70.297	Ictidomys_tridecemlineatus
ENSPKIG00000007242	smg7	99	69.307	ENSJJAG00000012351	Smg7	99	63.721	Jaculus_jaculus
ENSPKIG00000007242	smg7	97	65.049	ENSKMAG00000004900	smg7	100	64.960	Kryptolebias_marmoratus
ENSPKIG00000007242	smg7	99	68.981	ENSLBEG00000002983	smg7	99	68.832	Labrus_bergylta
ENSPKIG00000007242	smg7	55	66.891	ENSLBEG00000005220	-	75	66.891	Labrus_bergylta
ENSPKIG00000007242	smg7	99	70.352	ENSLACG00000000972	SMG7	99	67.828	Latimeria_chalumnae
ENSPKIG00000007242	smg7	99	76.733	ENSLOCG00000002010	smg7	93	76.733	Lepisosteus_oculatus
ENSPKIG00000007242	smg7	99	68.500	ENSLAFG00000008186	SMG7	99	63.882	Loxodonta_africana
ENSPKIG00000007242	smg7	99	68.500	ENSMFAG00000031653	SMG7	89	89.634	Macaca_fascicularis
ENSPKIG00000007242	smg7	99	68.500	ENSMMUG00000018458	SMG7	99	65.101	Macaca_mulatta
ENSPKIG00000007242	smg7	99	65.993	ENSMNEG00000034798	SMG7	89	89.634	Macaca_nemestrina
ENSPKIG00000007242	smg7	99	68.500	ENSMLEG00000037170	SMG7	100	65.285	Mandrillus_leucophaeus
ENSPKIG00000007242	smg7	89	71.388	ENSMAMG00000018733	smg7	86	71.201	Mastacembelus_armatus
ENSPKIG00000007242	smg7	100	71.500	ENSMZEG00005015247	smg7	100	70.833	Maylandia_zebra
ENSPKIG00000007242	smg7	97	65.062	ENSMGAG00000001561	SMG7	99	65.496	Meleagris_gallopavo
ENSPKIG00000007242	smg7	99	68.500	ENSMAUG00000019484	Smg7	99	64.340	Mesocricetus_auratus
ENSPKIG00000007242	smg7	99	68.500	ENSMICG00000007145	SMG7	84	89.441	Microcebus_murinus
ENSPKIG00000007242	smg7	99	68.500	ENSMOCG00000020748	Smg7	99	64.211	Microtus_ochrogaster
ENSPKIG00000007242	smg7	99	68.226	ENSMMOG00000001524	smg7	99	68.049	Mola_mola
ENSPKIG00000007242	smg7	93	63.743	ENSMODG00000007139	SMG7	98	64.824	Monodelphis_domestica
ENSPKIG00000007242	smg7	100	70.451	ENSMALG00000000061	smg7	94	70.701	Monopterus_albus
ENSPKIG00000007242	smg7	99	69.000	MGP_CAROLIEiJ_G0014704	Smg7	99	64.468	Mus_caroli
ENSPKIG00000007242	smg7	99	69.000	ENSMUSG00000042772	Smg7	99	64.179	Mus_musculus
ENSPKIG00000007242	smg7	99	68.500	MGP_PahariEiJ_G0027940	Smg7	99	64.442	Mus_pahari
ENSPKIG00000007242	smg7	99	69.000	MGP_SPRETEiJ_G0015511	Smg7	99	64.267	Mus_spretus
ENSPKIG00000007242	smg7	98	69.000	ENSMPUG00000011732	SMG7	92	69.802	Mustela_putorius_furo
ENSPKIG00000007242	smg7	100	67.000	ENSMLUG00000015417	SMG7	99	63.406	Myotis_lucifugus
ENSPKIG00000007242	smg7	99	67.500	ENSNGAG00000009836	Smg7	99	64.851	Nannospalax_galili
ENSPKIG00000007242	smg7	98	65.009	ENSNBRG00000024343	smg7	99	64.742	Neolamprologus_brichardi
ENSPKIG00000007242	smg7	99	68.500	ENSNLEG00000018018	SMG7	100	65.285	Nomascus_leucogenys
ENSPKIG00000007242	smg7	72	63.636	ENSMEUG00000004681	SMG7	73	63.636	Notamacropus_eugenii
ENSPKIG00000007242	smg7	96	62.500	ENSOPRG00000013942	SMG7	96	60.280	Ochotona_princeps
ENSPKIG00000007242	smg7	99	68.812	ENSODEG00000010390	SMG7	99	64.561	Octodon_degus
ENSPKIG00000007242	smg7	99	69.379	ENSONIG00000000277	smg7	99	69.204	Oreochromis_niloticus
ENSPKIG00000007242	smg7	98	67.822	ENSOANG00000000994	SMG7	100	63.189	Ornithorhynchus_anatinus
ENSPKIG00000007242	smg7	99	62.996	ENSOCUG00000005887	SMG7	92	61.792	Oryctolagus_cuniculus
ENSPKIG00000007242	smg7	100	69.433	ENSORLG00000007314	smg7	100	69.856	Oryzias_latipes
ENSPKIG00000007242	smg7	100	69.433	ENSORLG00020015779	smg7	100	69.856	Oryzias_latipes_hni
ENSPKIG00000007242	smg7	100	69.687	ENSORLG00015012289	smg7	100	69.517	Oryzias_latipes_hsok
ENSPKIG00000007242	smg7	100	69.687	ENSOMEG00000002328	smg7	100	69.687	Oryzias_melastigma
ENSPKIG00000007242	smg7	96	64.537	ENSOGAG00000003107	SMG7	93	63.502	Otolemur_garnettii
ENSPKIG00000007242	smg7	99	68.000	ENSOARG00000001352	SMG7	100	62.633	Ovis_aries
ENSPKIG00000007242	smg7	99	65.993	ENSPPAG00000031619	SMG7	89	89.024	Pan_paniscus
ENSPKIG00000007242	smg7	99	68.812	ENSPPRG00000011222	SMG7	99	65.057	Panthera_pardus
ENSPKIG00000007242	smg7	96	68.812	ENSPTIG00000007242	SMG7	100	65.285	Panthera_tigris_altaica
ENSPKIG00000007242	smg7	99	65.993	ENSPTRG00000001764	SMG7	89	89.024	Pan_troglodytes
ENSPKIG00000007242	smg7	99	68.500	ENSPANG00000004520	SMG7	99	64.969	Papio_anubis
ENSPKIG00000007242	smg7	99	69.307	ENSPSIG00000012201	SMG7	100	65.044	Pelodiscus_sinensis
ENSPKIG00000007242	smg7	70	47.494	ENSPMGG00000021833	smg7	93	55.300	Periophthalmus_magnuspinnatus
ENSPKIG00000007242	smg7	99	69.500	ENSPEMG00000011315	Smg7	94	70.297	Peromyscus_maniculatus_bairdii
ENSPKIG00000007242	smg7	99	67.822	ENSPCIG00000003786	SMG7	88	91.824	Phascolarctos_cinereus
ENSPKIG00000007242	smg7	100	68.193	ENSPFOG00000019219	smg7	100	68.136	Poecilia_formosa
ENSPKIG00000007242	smg7	99	66.871	ENSPLAG00000001446	smg7	99	67.546	Poecilia_latipinna
ENSPKIG00000007242	smg7	96	66.215	ENSPMEG00000005218	smg7	99	66.818	Poecilia_mexicana
ENSPKIG00000007242	smg7	89	68.138	ENSPREG00000019039	smg7	92	67.115	Poecilia_reticulata
ENSPKIG00000007242	smg7	99	65.993	ENSPPYG00000000427	SMG7	99	64.969	Pongo_abelii
ENSPKIG00000007242	smg7	84	72.088	ENSPCAG00000008360	SMG7	86	72.088	Procavia_capensis
ENSPKIG00000007242	smg7	99	69.000	ENSPCOG00000011996	SMG7	79	89.441	Propithecus_coquereli
ENSPKIG00000007242	smg7	91	71.028	ENSPVAG00000000851	SMG7	82	71.028	Pteropus_vampyrus
ENSPKIG00000007242	smg7	100	71.930	ENSPNYG00000007643	smg7	100	71.429	Pundamilia_nyererei
ENSPKIG00000007242	smg7	100	75.378	ENSPNAG00000011374	smg7	100	75.378	Pygocentrus_nattereri
ENSPKIG00000007242	smg7	99	69.458	ENSRNOG00000027962	Smg7	100	65.056	Rattus_norvegicus
ENSPKIG00000007242	smg7	99	68.500	ENSRBIG00000036316	SMG7	100	65.285	Rhinopithecus_bieti
ENSPKIG00000007242	smg7	99	68.500	ENSRROG00000035719	SMG7	100	65.285	Rhinopithecus_roxellana
ENSPKIG00000007242	smg7	99	67.500	ENSSBOG00000023454	SMG7	86	92.405	Saimiri_boliviensis_boliviensis
ENSPKIG00000007242	smg7	99	65.233	ENSSHAG00000013147	SMG7	99	64.223	Sarcophilus_harrisii
ENSPKIG00000007242	smg7	100	83.120	ENSSFOG00015017252	smg7	100	82.779	Scleropages_formosus
ENSPKIG00000007242	smg7	100	70.286	ENSSMAG00000006067	smg7	100	70.816	Scophthalmus_maximus
ENSPKIG00000007242	smg7	97	79.391	ENSSDUG00000017543	smg7	99	69.004	Seriola_dumerili
ENSPKIG00000007242	smg7	99	66.637	ENSSPUG00000002064	SMG7	99	66.169	Sphenodon_punctatus
ENSPKIG00000007242	smg7	98	70.108	ENSSPAG00000008733	smg7	98	70.287	Stegastes_partitus
ENSPKIG00000007242	smg7	99	69.000	ENSSSCG00000015558	SMG7	99	64.003	Sus_scrofa
ENSPKIG00000007242	smg7	99	65.267	ENSTGUG00000003928	SMG7	100	65.499	Taeniopygia_guttata
ENSPKIG00000007242	smg7	99	67.526	ENSTNIG00000002802	smg7	100	63.479	Tetraodon_nigroviridis
ENSPKIG00000007242	smg7	77	66.857	ENSTBEG00000003220	SMG7	70	66.857	Tupaia_belangeri
ENSPKIG00000007242	smg7	96	64.505	ENSTTRG00000014778	SMG7	94	62.544	Tursiops_truncatus
ENSPKIG00000007242	smg7	96	63.263	ENSUAMG00000017473	SMG7	100	62.511	Ursus_americanus
ENSPKIG00000007242	smg7	96	68.500	ENSUMAG00000016389	SMG7	100	63.510	Ursus_maritimus
ENSPKIG00000007242	smg7	99	68.000	ENSVVUG00000008976	SMG7	99	64.950	Vulpes_vulpes
ENSPKIG00000007242	smg7	99	59.582	ENSXETG00000012528	smg7	99	59.790	Xenopus_tropicalis
ENSPKIG00000007242	smg7	99	67.133	ENSXMAG00000007123	smg7	99	67.428	Xiphophorus_maculatus