EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000007995 (Gene tree)
Gene ID: 111851407
Gene Symbol: trnau1apb
Alias: -
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 6168 bases
Position: chrPGUA01000221.1:749133-755300
Accession: 111851407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000025002	RRM_1	PF00076.22	1.5e-26	1	2
ENSPKIP00000025002	RRM_1	PF00076.22	1.5e-26	2	2
ENSPKIP00000024969	RRM_1	PF00076.22	1.7e-26	1	2
ENSPKIP00000024969	RRM_1	PF00076.22	1.7e-26	2	2
ENSPKIP00000024954	RRM_1	PF00076.22	1.7e-26	1	2
ENSPKIP00000024954	RRM_1	PF00076.22	1.7e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000005691	-	2475	XM_023826317	ENSPKIP00000024969	331 (aa)	XP_023682085	UPI000CD5CA3C
ENSPKIT00000005724	-	888	-	ENSPKIP00000025002	295 (aa)	-	-
ENSPKIT00000005676	-	3293	-	ENSPKIP00000024954	307 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000007995's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000007995's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000007995	trnau1apb	96	41.860	ENSPKIG00000015511	trnau1apa	58	49.438
ENSPKIG00000007995	trnau1apb	92	59.091	ENSPKIG00000022205	-	64	59.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000007995	trnau1apb	99	61.224	ENSAPOG00000010086	trnau1apb	60	82.682	Acanthochromis_polyacanthus
ENSPKIG00000007995	trnau1apb	99	61.830	ENSACIG00000001863	trnau1apb	57	80.874	Amphilophus_citrinellus
ENSPKIG00000007995	trnau1apb	99	61.318	ENSAOCG00000011891	trnau1apb	100	58.772	Amphiprion_ocellaris
ENSPKIG00000007995	trnau1apb	99	59.824	ENSAPEG00000008029	trnau1apb	100	59.763	Amphiprion_percula
ENSPKIG00000007995	trnau1apb	99	61.383	ENSATEG00000002196	trnau1apb	53	81.967	Anabas_testudineus
ENSPKIG00000007995	trnau1apb	99	61.610	ENSACLG00000003016	trnau1apb	56	80.874	Astatotilapia_calliptera
ENSPKIG00000007995	trnau1apb	98	71.385	ENSAMXG00000001805	trnau1apb	99	72.000	Astyanax_mexicanus
ENSPKIG00000007995	trnau1apb	99	59.538	ENSCSEG00000018215	trnau1apb	100	57.602	Cynoglossus_semilaevis
ENSPKIG00000007995	trnau1apb	95	55.455	ENSCVAG00000017866	trnau1apb	50	78.313	Cyprinodon_variegatus
ENSPKIG00000007995	trnau1apb	100	72.508	ENSDARG00000056475	trnau1apb	100	72.508	Danio_rerio
ENSPKIG00000007995	trnau1apb	100	73.795	ENSELUG00000016683	trnau1apb	100	73.193	Esox_lucius
ENSPKIG00000007995	trnau1apb	99	58.028	ENSFHEG00000001267	trnau1apb	99	55.747	Fundulus_heteroclitus
ENSPKIG00000007995	trnau1apb	98	59.172	ENSGMOG00000001160	trnau1apb	54	81.967	Gadus_morhua
ENSPKIG00000007995	trnau1apb	60	78.409	ENSGAFG00000006770	trnau1apb	58	79.888	Gambusia_affinis
ENSPKIG00000007995	trnau1apb	99	63.235	ENSGACG00000014944	trnau1apb	100	60.360	Gasterosteus_aculeatus
ENSPKIG00000007995	trnau1apb	70	48.291	ENSGAGG00000022384	-	78	45.714	Gopherus_agassizii
ENSPKIG00000007995	trnau1apb	99	63.758	ENSHBUG00000018944	trnau1apb	98	59.933	Haplochromis_burtoni
ENSPKIG00000007995	trnau1apb	76	67.635	ENSHCOG00000011350	trnau1apb	80	62.205	Hippocampus_comes
ENSPKIG00000007995	trnau1apb	98	71.385	ENSIPUG00000008843	tsp1l	99	71.385	Ictalurus_punctatus
ENSPKIG00000007995	trnau1apb	69	71.233	ENSKMAG00000010082	trnau1apb	53	78.571	Kryptolebias_marmoratus
ENSPKIG00000007995	trnau1apb	99	60.350	ENSLBEG00000020480	trnau1apb	100	59.226	Labrus_bergylta
ENSPKIG00000007995	trnau1apb	99	65.559	ENSLOCG00000013175	trnau1apb	99	64.458	Lepisosteus_oculatus
ENSPKIG00000007995	trnau1apb	99	61.047	ENSMAMG00000012192	trnau1apb	100	59.649	Mastacembelus_armatus
ENSPKIG00000007995	trnau1apb	99	62.099	ENSMZEG00005014852	trnau1apb	53	80.874	Maylandia_zebra
ENSPKIG00000007995	trnau1apb	69	48.372	ENSMGAG00000003234	-	100	46.512	Meleagris_gallopavo
ENSPKIG00000007995	trnau1apb	96	53.143	ENSMMOG00000021521	trnau1apb	57	68.205	Mola_mola
ENSPKIG00000007995	trnau1apb	58	82.456	ENSMALG00000003772	trnau1apb	98	58.194	Monopterus_albus
ENSPKIG00000007995	trnau1apb	97	59.940	ENSNBRG00000000751	trnau1apb	99	59.385	Neolamprologus_brichardi
ENSPKIG00000007995	trnau1apb	99	62.376	ENSONIG00000016639	trnau1apb	60	80.556	Oreochromis_niloticus
ENSPKIG00000007995	trnau1apb	67	74.242	ENSORLG00000013265	trnau1apb	99	57.514	Oryzias_latipes
ENSPKIG00000007995	trnau1apb	99	57.865	ENSORLG00020004464	trnau1apb	99	57.803	Oryzias_latipes_hni
ENSPKIG00000007995	trnau1apb	99	57.865	ENSORLG00015021098	trnau1apb	99	57.849	Oryzias_latipes_hsok
ENSPKIG00000007995	trnau1apb	63	78.061	ENSOMEG00000016531	trnau1apb	99	58.092	Oryzias_melastigma
ENSPKIG00000007995	trnau1apb	70	47.899	ENSPSIG00000004189	-	78	47.143	Pelodiscus_sinensis
ENSPKIG00000007995	trnau1apb	98	60.345	ENSPMGG00000018509	trnau1apb	61	79.888	Periophthalmus_magnuspinnatus
ENSPKIG00000007995	trnau1apb	99	61.446	ENSPFOG00000003938	trnau1apb	99	55.172	Poecilia_formosa
ENSPKIG00000007995	trnau1apb	99	58.453	ENSPLAG00000015480	trnau1apb	99	55.172	Poecilia_latipinna
ENSPKIG00000007995	trnau1apb	99	58.453	ENSPMEG00000012743	trnau1apb	99	55.172	Poecilia_mexicana
ENSPKIG00000007995	trnau1apb	99	56.818	ENSPREG00000015035	trnau1apb	99	54.023	Poecilia_reticulata
ENSPKIG00000007995	trnau1apb	99	59.877	ENSPNYG00000012127	trnau1apb	56	76.503	Pundamilia_nyererei
ENSPKIG00000007995	trnau1apb	100	72.973	ENSPNAG00000019138	trnau1apb	100	72.508	Pygocentrus_nattereri
ENSPKIG00000007995	trnau1apb	98	82.979	ENSSFOG00015014158	trnau1apb	99	82.675	Scleropages_formosus
ENSPKIG00000007995	trnau1apb	98	59.238	ENSSMAG00000001745	trnau1apb	100	57.440	Scophthalmus_maximus
ENSPKIG00000007995	trnau1apb	99	58.263	ENSSDUG00000011109	trnau1apb	99	58.651	Seriola_dumerili
ENSPKIG00000007995	trnau1apb	99	57.983	ENSSLDG00000012947	trnau1apb	99	58.065	Seriola_lalandi_dorsalis
ENSPKIG00000007995	trnau1apb	99	62.029	ENSSPAG00000006917	trnau1apb	100	58.480	Stegastes_partitus
ENSPKIG00000007995	trnau1apb	99	57.714	ENSTRUG00000008608	trnau1apb	99	53.779	Takifugu_rubripes
ENSPKIG00000007995	trnau1apb	99	56.129	ENSTNIG00000000916	trnau1apb	99	56.271	Tetraodon_nigroviridis
ENSPKIG00000007995	trnau1apb	94	60.071	ENSXCOG00000007974	trnau1apb	94	53.016	Xiphophorus_couchianus
ENSPKIG00000007995	trnau1apb	99	59.143	ENSXMAG00000029918	trnau1apb	99	55.460	Xiphophorus_maculatus