EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPKIG00000008037 (Gene tree)
Gene ID
111837172
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Paramormyrops_kingsleyae
Status
putative
Strand
Minus strand
Length
5195 bases
Position
chrPGUA01000592.1:145071-150265
Accession
111837172
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPKIP00000025009LSMPF01423.228.8e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPKIT00000005731-759-ENSPKIP00000025009112 (aa)XP_023654786UPI000CD63E9D
Gene Model
Click here to download ENSPKIG00000008037's gene model file
Pathways
Pathway IDPathway NameSource
pki03018RNA degradationKEGG
pki03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000008037's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPKIG00000008037lsm37435.714ENSPKIG00000011910lsm59235.714
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPKIG00000008037lsm39198.039ENSG00000170860LSM310098.039Homo_sapiens
ENSPKIG00000008037lsm39197.059ENSAPOG00000018947lsm310097.059Acanthochromis_polyacanthus
ENSPKIG00000008037lsm39198.039ENSAMEG00000009405LSM310098.039Ailuropoda_melanoleuca
ENSPKIG00000008037lsm310084.746ENSACIG00000004574lsm38384.746Amphilophus_citrinellus
ENSPKIG00000008037lsm39197.059ENSAOCG00000007658lsm310097.059Amphiprion_ocellaris
ENSPKIG00000008037lsm39197.059ENSAPEG00000018621lsm310097.059Amphiprion_percula
ENSPKIG00000008037lsm39197.059ENSATEG00000005153lsm310097.059Anabas_testudineus
ENSPKIG00000008037lsm385100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSPKIG00000008037lsm39199.020ENSACAG00000013503LSM310099.020Anolis_carolinensis
ENSPKIG00000008037lsm39194.118ENSANAG00000002903-10094.118Aotus_nancymaae
ENSPKIG00000008037lsm39198.039ENSANAG00000034627LSM310098.039Aotus_nancymaae
ENSPKIG00000008037lsm39292.233ENSACLG00000001726-10092.233Astatotilapia_calliptera
ENSPKIG00000008037lsm39199.020ENSAMXG00000041214lsm310099.020Astyanax_mexicanus
ENSPKIG00000008037lsm386100.000ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSPKIG00000008037lsm39170.588WBGene00003077lsm-310070.588Caenorhabditis_elegans
ENSPKIG00000008037lsm39196.078ENSCAFG00000001760LSM310096.078Canis_familiaris
ENSPKIG00000008037lsm39196.078ENSCAFG00020021584-10096.078Canis_lupus_dingo
ENSPKIG00000008037lsm39187.850ENSCAFG00020020950-10087.850Canis_lupus_dingo
ENSPKIG00000008037lsm39189.216ENSCAFG00020016680-10089.216Canis_lupus_dingo
ENSPKIG00000008037lsm39195.098ENSCAFG00020026452-10095.098Canis_lupus_dingo
ENSPKIG00000008037lsm39196.078ENSCAFG00020017266-10096.078Canis_lupus_dingo
ENSPKIG00000008037lsm39198.039ENSCHIG00000024650LSM310098.039Capra_hircus
ENSPKIG00000008037lsm39199.020ENSTSYG00000005204-10099.020Carlito_syrichta
ENSPKIG00000008037lsm39080.198ENSTSYG00000028528-9980.198Carlito_syrichta
ENSPKIG00000008037lsm386100.000ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSPKIG00000008037lsm39198.039ENSCPOG00000034071LSM310098.039Cavia_porcellus
ENSPKIG00000008037lsm39198.039ENSCCAG00000019503-10098.039Cebus_capucinus
ENSPKIG00000008037lsm39198.039ENSCCAG00000036499-10098.039Cebus_capucinus
ENSPKIG00000008037lsm39178.431ENSCCAG00000032763-10078.431Cebus_capucinus
ENSPKIG00000008037lsm39077.228ENSCATG00000031630-9977.228Cercocebus_atys
ENSPKIG00000008037lsm39198.039ENSCATG00000039421LSM310098.039Cercocebus_atys
ENSPKIG00000008037lsm39198.039ENSCLAG00000015997LSM310098.039Chinchilla_lanigera
ENSPKIG00000008037lsm39193.137ENSCSAG00000019525-10093.137Chlorocebus_sabaeus
ENSPKIG00000008037lsm39199.020ENSCPBG00000014531LSM310099.020Chrysemys_picta_bellii
ENSPKIG00000008037lsm39181.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSPKIG00000008037lsm39195.098ENSCANG00000018782-10095.098Colobus_angolensis_palliatus
ENSPKIG00000008037lsm39198.039ENSCANG00000033944-10098.039Colobus_angolensis_palliatus
ENSPKIG00000008037lsm39195.098ENSCANG00000038037-10095.098Colobus_angolensis_palliatus
ENSPKIG00000008037lsm39174.757ENSCGRG00001008639-10074.757Cricetulus_griseus_chok1gshd
ENSPKIG00000008037lsm38982.000ENSCGRG00001011396-10082.000Cricetulus_griseus_chok1gshd
ENSPKIG00000008037lsm39198.039ENSCGRG00001017598Lsm310098.039Cricetulus_griseus_chok1gshd
ENSPKIG00000008037lsm38584.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSPKIG00000008037lsm39198.039ENSCGRG00000016159Lsm310098.039Cricetulus_griseus_crigri
ENSPKIG00000008037lsm39690.179ENSCSEG00000015071lsm38490.179Cynoglossus_semilaevis
ENSPKIG00000008037lsm39196.078ENSCVAG00000006933lsm310096.078Cyprinodon_variegatus
ENSPKIG00000008037lsm39197.059ENSDARG00000089663lsm310097.059Danio_rerio
ENSPKIG00000008037lsm39198.039ENSDNOG00000030808LSM310098.039Dasypus_novemcinctus
ENSPKIG00000008037lsm39178.431ENSDORG00000024490-10078.431Dipodomys_ordii
ENSPKIG00000008037lsm39198.039ENSDORG00000006894-10098.039Dipodomys_ordii
ENSPKIG00000008037lsm39178.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSPKIG00000008037lsm39198.039ENSETEG00000016207LSM310098.039Echinops_telfairi
ENSPKIG00000008037lsm39188.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSPKIG00000008037lsm39198.039ENSEASG00005015443LSM310098.039Equus_asinus_asinus
ENSPKIG00000008037lsm39198.039ENSECAG00000007803LSM310098.039Equus_caballus
ENSPKIG00000008037lsm39198.039ENSELUG00000018922lsm310098.039Esox_lucius
ENSPKIG00000008037lsm39173.529ENSFCAG00000044344-10073.529Felis_catus
ENSPKIG00000008037lsm39198.039ENSFCAG00000038453LSM310098.039Felis_catus
ENSPKIG00000008037lsm39199.020ENSFALG00000012644LSM310099.020Ficedula_albicollis
ENSPKIG00000008037lsm39198.039ENSFDAG00000011470LSM310098.039Fukomys_damarensis
ENSPKIG00000008037lsm39197.059ENSFHEG00000000876lsm310097.059Fundulus_heteroclitus
ENSPKIG00000008037lsm38596.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSPKIG00000008037lsm39197.059ENSGAFG00000013965lsm310097.059Gambusia_affinis
ENSPKIG00000008037lsm39197.059ENSGACG00000003488lsm310097.059Gasterosteus_aculeatus
ENSPKIG00000008037lsm39199.020ENSGAGG00000025707LSM310099.020Gopherus_agassizii
ENSPKIG00000008037lsm39198.039ENSGGOG00000010006LSM310098.039Gorilla_gorilla
ENSPKIG00000008037lsm39197.059ENSHBUG00000022399lsm310097.059Haplochromis_burtoni
ENSPKIG00000008037lsm39198.039ENSHGLG00000000651LSM310098.039Heterocephalus_glaber_female
ENSPKIG00000008037lsm39178.431ENSHGLG00000015564-10078.431Heterocephalus_glaber_female
ENSPKIG00000008037lsm39198.039ENSHGLG00100011343LSM310098.039Heterocephalus_glaber_male
ENSPKIG00000008037lsm39178.431ENSHGLG00100010658-10078.431Heterocephalus_glaber_male
ENSPKIG00000008037lsm39196.078ENSHCOG00000013481lsm310096.078Hippocampus_comes
ENSPKIG00000008037lsm39197.059ENSIPUG00000009207lsm310097.059Ictalurus_punctatus
ENSPKIG00000008037lsm39198.039ENSSTOG00000006842LSM310098.039Ictidomys_tridecemlineatus
ENSPKIG00000008037lsm39074.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSPKIG00000008037lsm39198.039ENSJJAG00000017351Lsm310098.039Jaculus_jaculus
ENSPKIG00000008037lsm39189.216ENSJJAG00000012797-10089.216Jaculus_jaculus
ENSPKIG00000008037lsm39196.078ENSKMAG00000015182lsm310096.078Kryptolebias_marmoratus
ENSPKIG00000008037lsm38894.898ENSLBEG00000021292lsm310094.898Labrus_bergylta
ENSPKIG00000008037lsm39197.059ENSLOCG00000013560lsm310097.059Lepisosteus_oculatus
ENSPKIG00000008037lsm39197.087ENSLAFG00000023308LSM310097.087Loxodonta_africana
ENSPKIG00000008037lsm39198.039ENSMFAG00000003185LSM310098.039Macaca_fascicularis
ENSPKIG00000008037lsm38877.551ENSMMUG00000002294-9577.551Macaca_mulatta
ENSPKIG00000008037lsm39175.490ENSMMUG00000043596-10075.490Macaca_mulatta
ENSPKIG00000008037lsm39198.039ENSMMUG00000023126LSM310098.039Macaca_mulatta
ENSPKIG00000008037lsm39198.039ENSMNEG00000043632LSM310098.039Macaca_nemestrina
ENSPKIG00000008037lsm39079.208ENSMNEG00000037686-9979.208Macaca_nemestrina
ENSPKIG00000008037lsm39198.039ENSMLEG00000036162LSM310098.039Mandrillus_leucophaeus
ENSPKIG00000008037lsm39197.059ENSMAMG00000012807lsm310097.059Mastacembelus_armatus
ENSPKIG00000008037lsm39296.117ENSMZEG00005016682lsm37496.117Maylandia_zebra
ENSPKIG00000008037lsm386100.000ENSMGAG00000007776LSM3100100.000Meleagris_gallopavo
ENSPKIG00000008037lsm39183.333ENSMICG00000027821-10083.333Microcebus_murinus
ENSPKIG00000008037lsm39197.059ENSMICG00000032361-10097.059Microcebus_murinus
ENSPKIG00000008037lsm39198.039ENSMOCG00000014269Lsm310098.039Microtus_ochrogaster
ENSPKIG00000008037lsm39196.078ENSMMOG00000020715lsm310096.078Mola_mola
ENSPKIG00000008037lsm39197.059ENSMODG00000007275LSM310097.059Monodelphis_domestica
ENSPKIG00000008037lsm39197.059ENSMALG00000006485lsm310097.059Monopterus_albus
ENSPKIG00000008037lsm39198.039ENSMUSG00000034192Lsm310098.039Mus_musculus
ENSPKIG00000008037lsm39198.039MGP_PahariEiJ_G0022402Lsm310098.039Mus_pahari
ENSPKIG00000008037lsm39198.039MGP_SPRETEiJ_G0029681Lsm310098.039Mus_spretus
ENSPKIG00000008037lsm38886.869ENSMPUG00000019120-9786.869Mustela_putorius_furo
ENSPKIG00000008037lsm37690.588ENSMPUG00000017256-10090.588Mustela_putorius_furo
ENSPKIG00000008037lsm39192.157ENSMLUG00000024700-10092.157Myotis_lucifugus
ENSPKIG00000008037lsm39198.039ENSMLUG00000010677LSM310098.039Myotis_lucifugus
ENSPKIG00000008037lsm39172.549ENSNGAG00000013716-10072.549Nannospalax_galili
ENSPKIG00000008037lsm39080.198ENSNGAG00000010207-9980.198Nannospalax_galili
ENSPKIG00000008037lsm39198.039ENSNGAG00000022450Lsm310098.039Nannospalax_galili
ENSPKIG00000008037lsm39197.059ENSNBRG00000014318lsm310097.059Neolamprologus_brichardi
ENSPKIG00000008037lsm39189.216ENSNLEG00000030229-10089.216Nomascus_leucogenys
ENSPKIG00000008037lsm39198.039ENSNLEG00000005079LSM310098.039Nomascus_leucogenys
ENSPKIG00000008037lsm39198.039ENSODEG00000001726LSM310098.039Octodon_degus
ENSPKIG00000008037lsm39196.078ENSODEG00000019158-10096.078Octodon_degus
ENSPKIG00000008037lsm39197.059ENSODEG00000019740-10097.059Octodon_degus
ENSPKIG00000008037lsm39190.196ENSODEG00000019403-10090.196Octodon_degus
ENSPKIG00000008037lsm39197.059ENSONIG00000000370lsm310097.059Oreochromis_niloticus
ENSPKIG00000008037lsm39197.059ENSONIG00000021369-10097.059Oreochromis_niloticus
ENSPKIG00000008037lsm39197.059ENSOANG00000012273LSM310097.059Ornithorhynchus_anatinus
ENSPKIG00000008037lsm39193.137ENSOCUG00000011088-10093.137Oryctolagus_cuniculus
ENSPKIG00000008037lsm39198.039ENSOCUG00000027653-10098.039Oryctolagus_cuniculus
ENSPKIG00000008037lsm39195.098ENSORLG00000025900lsm310095.098Oryzias_latipes
ENSPKIG00000008037lsm39195.098ENSORLG00020007125lsm310095.098Oryzias_latipes_hni
ENSPKIG00000008037lsm39195.098ENSORLG00015002944lsm310095.098Oryzias_latipes_hsok
ENSPKIG00000008037lsm39195.098ENSOMEG00000001915lsm310095.098Oryzias_melastigma
ENSPKIG00000008037lsm39188.235ENSOGAG00000033051-10088.235Otolemur_garnettii
ENSPKIG00000008037lsm38896.939ENSOGAG00000028858-10096.939Otolemur_garnettii
ENSPKIG00000008037lsm39198.039ENSOGAG00000007659-10098.039Otolemur_garnettii
ENSPKIG00000008037lsm39197.087ENSOARG00000000600LSM310097.087Ovis_aries
ENSPKIG00000008037lsm39198.039ENSPPAG00000034074LSM310098.039Pan_paniscus
ENSPKIG00000008037lsm39197.059ENSPPRG00000020953-10097.059Panthera_pardus
ENSPKIG00000008037lsm39090.099ENSPPRG00000010610-8990.099Panthera_pardus
ENSPKIG00000008037lsm39198.039ENSPPRG00000012912-10098.039Panthera_pardus
ENSPKIG00000008037lsm39198.039ENSPTIG00000013072-10098.039Panthera_tigris_altaica
ENSPKIG00000008037lsm39198.039ENSPTIG00000003463-10098.039Panthera_tigris_altaica
ENSPKIG00000008037lsm39198.039ENSPTRG00000014650LSM310098.039Pan_troglodytes
ENSPKIG00000008037lsm39176.471ENSPANG00000032192-10076.471Papio_anubis
ENSPKIG00000008037lsm39198.039ENSPANG00000009378LSM310098.039Papio_anubis
ENSPKIG00000008037lsm39199.020ENSPSIG00000015720LSM310099.020Pelodiscus_sinensis
ENSPKIG00000008037lsm38792.784ENSPMGG00000012103lsm39892.784Periophthalmus_magnuspinnatus
ENSPKIG00000008037lsm39198.039ENSPEMG00000015797Lsm310098.039Peromyscus_maniculatus_bairdii
ENSPKIG00000008037lsm39182.353ENSPEMG00000020213-10082.353Peromyscus_maniculatus_bairdii
ENSPKIG00000008037lsm39197.059ENSPFOG00000008372lsm310097.059Poecilia_formosa
ENSPKIG00000008037lsm39197.059ENSPLAG00000000563lsm310097.059Poecilia_latipinna
ENSPKIG00000008037lsm39197.059ENSPMEG00000022052lsm310097.059Poecilia_mexicana
ENSPKIG00000008037lsm39197.059ENSPREG00000022485lsm310097.059Poecilia_reticulata
ENSPKIG00000008037lsm39198.039ENSPPYG00000013402LSM310098.039Pongo_abelii
ENSPKIG00000008037lsm39198.039ENSPCAG00000017077LSM310098.039Procavia_capensis
ENSPKIG00000008037lsm39197.059ENSPCOG00000016217-10097.059Propithecus_coquereli
ENSPKIG00000008037lsm38676.042ENSPCOG00000014435-9876.042Propithecus_coquereli
ENSPKIG00000008037lsm39198.039ENSPVAG00000016795LSM310098.039Pteropus_vampyrus
ENSPKIG00000008037lsm39296.117ENSPNYG00000009552lsm37496.117Pundamilia_nyererei
ENSPKIG00000008037lsm39199.020ENSPNAG00000023467lsm310099.020Pygocentrus_nattereri
ENSPKIG00000008037lsm39198.039ENSRNOG00000008733Lsm310098.039Rattus_norvegicus
ENSPKIG00000008037lsm39198.039ENSRBIG00000034399LSM310098.039Rhinopithecus_bieti
ENSPKIG00000008037lsm39181.373ENSRBIG00000043783-10081.373Rhinopithecus_bieti
ENSPKIG00000008037lsm39179.412ENSRROG00000044056-10079.412Rhinopithecus_roxellana
ENSPKIG00000008037lsm39198.039ENSRROG00000033276-10098.039Rhinopithecus_roxellana
ENSPKIG00000008037lsm39187.255ENSRROG00000044047-10087.255Rhinopithecus_roxellana
ENSPKIG00000008037lsm39182.353ENSRROG00000039868-10082.353Rhinopithecus_roxellana
ENSPKIG00000008037lsm39198.039ENSSBOG00000024310LSM310098.039Saimiri_boliviensis_boliviensis
ENSPKIG00000008037lsm39199.020ENSSFOG00015007071lsm310099.020Scleropages_formosus
ENSPKIG00000008037lsm39197.059ENSSMAG00000001818lsm310097.059Scophthalmus_maximus
ENSPKIG00000008037lsm39197.059ENSSDUG00000006040lsm310097.059Seriola_dumerili
ENSPKIG00000008037lsm39197.059ENSSLDG00000006399lsm310097.059Seriola_lalandi_dorsalis
ENSPKIG00000008037lsm352100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSPKIG00000008037lsm39189.216ENSSPUG00000005394LSM310089.216Sphenodon_punctatus
ENSPKIG00000008037lsm385100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSPKIG00000008037lsm39186.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSPKIG00000008037lsm39198.039ENSSSCG00000011601LSM310098.039Sus_scrofa
ENSPKIG00000008037lsm38775.258ENSSSCG00000023718-9975.258Sus_scrofa
ENSPKIG00000008037lsm39199.020ENSTGUG00000008327LSM310099.020Taeniopygia_guttata
ENSPKIG00000008037lsm39196.078ENSTRUG00000023175lsm310096.078Takifugu_rubripes
ENSPKIG00000008037lsm39196.078ENSTNIG00000005589lsm310096.078Tetraodon_nigroviridis
ENSPKIG00000008037lsm39188.235ENSTBEG00000001050-9988.235Tupaia_belangeri
ENSPKIG00000008037lsm39198.039ENSTTRG00000011197LSM310098.039Tursiops_truncatus
ENSPKIG00000008037lsm39198.039ENSUAMG00000017250-10098.039Ursus_americanus
ENSPKIG00000008037lsm39198.039ENSUMAG00000015905LSM310098.039Ursus_maritimus
ENSPKIG00000008037lsm385100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSPKIG00000008037lsm39193.137ENSVVUG00000006481-10093.137Vulpes_vulpes
ENSPKIG00000008037lsm39192.157ENSVVUG00000005684-10092.157Vulpes_vulpes
ENSPKIG00000008037lsm39189.216ENSVVUG00000024228-10089.216Vulpes_vulpes
ENSPKIG00000008037lsm39194.118ENSVVUG00000029294-10094.118Vulpes_vulpes
ENSPKIG00000008037lsm39194.118ENSVVUG00000007332-9194.118Vulpes_vulpes
ENSPKIG00000008037lsm39198.039ENSXETG00000011534lsm310098.039Xenopus_tropicalis
ENSPKIG00000008037lsm39197.059ENSXCOG00000017432LSM310097.059Xiphophorus_couchianus
ENSPKIG00000008037lsm39197.059ENSXMAG00000009151lsm310097.059Xiphophorus_maculatus

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