EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000008252 (Gene tree)
Gene ID: 111859635
Gene Symbol: srrm1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 9354 bases
Position: chrPGUA01000385.1:205014-214367
Accession: 111859635
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000025346	PWI	PF01480.17	3.5e-30	1	1
ENSPKIP00000025372	PWI	PF01480.17	3.5e-30	1	1
ENSPKIP00000025407	PWI	PF01480.17	3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000006143	-	2508	-	ENSPKIP00000025407	835 (aa)	-	-
ENSPKIT00000006079	-	2628	-	ENSPKIP00000025346	875 (aa)	XP_023698242	UPI000CD61199
ENSPKIT00000006108	-	2637	-	ENSPKIP00000025372	878 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000008252's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03013	RNA transport	KEGG
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000008252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000008252	srrm1	62	75.175	ENSAPOG00000001170	srrm1	99	98.718	Acanthochromis_polyacanthus
ENSPKIG00000008252	srrm1	62	77.113	ENSAOCG00000021757	srrm1	67	77.817	Amphiprion_ocellaris
ENSPKIG00000008252	srrm1	62	76.761	ENSAPEG00000018964	srrm1	67	77.465	Amphiprion_percula
ENSPKIG00000008252	srrm1	62	73.077	ENSATEG00000007659	srrm1	67	75.972	Anabas_testudineus
ENSPKIG00000008252	srrm1	59	54.086	ENSCANG00000026444	-	56	53.558	Colobus_angolensis_palliatus
ENSPKIG00000008252	srrm1	60	77.407	ENSCSEG00000000122	srrm1	67	77.372	Cynoglossus_semilaevis
ENSPKIG00000008252	srrm1	60	71.579	ENSELUG00000003385	srrm1	99	98.718	Esox_lucius
ENSPKIG00000008252	srrm1	63	74.648	ENSGACG00000007266	srrm1	63	93.789	Gasterosteus_aculeatus
ENSPKIG00000008252	srrm1	53	67.876	ENSHBUG00000020364	srrm1	60	55.959	Haplochromis_burtoni
ENSPKIG00000008252	srrm1	62	47.935	ENSHCOG00000012829	srrm1	69	73.540	Hippocampus_comes
ENSPKIG00000008252	srrm1	62	54.219	ENSLBEG00000013936	srrm1	61	75.000	Labrus_bergylta
ENSPKIG00000008252	srrm1	62	76.736	ENSMAMG00000010305	srrm1	67	77.739	Mastacembelus_armatus
ENSPKIG00000008252	srrm1	60	76.534	ENSONIG00000008206	srrm1	51	56.477	Oreochromis_niloticus
ENSPKIG00000008252	srrm1	56	40.990	ENSPPAG00000036722	-	61	48.235	Pan_paniscus
ENSPKIG00000008252	srrm1	60	77.068	ENSPLAG00000002058	srrm1	77	98.718	Poecilia_latipinna
ENSPKIG00000008252	srrm1	60	77.068	ENSPLAG00000006807	srrm1	99	98.718	Poecilia_latipinna
ENSPKIG00000008252	srrm1	61	83.696	ENSSFOG00015024011	srrm1	67	84.286	Scleropages_formosus
ENSPKIG00000008252	srrm1	63	77.273	ENSSPAG00000009507	srrm1	67	79.505	Stegastes_partitus
ENSPKIG00000008252	srrm1	62	72.438	ENSTRUG00000002519	srrm1	66	73.835	Takifugu_rubripes
ENSPKIG00000008252	srrm1	62	72.438	ENSTNIG00000016909	srrm1	66	73.214	Tetraodon_nigroviridis