EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000009402 (Gene tree)
Gene ID: 111838480
Gene Symbol: smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 19281 bases
Position: chrPGUA01000066.1:208237-227517
Accession: 111838480
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000027333	EST1	PF10374.9	1.4e-24	1	1
ENSPKIP00000027367	EST1	PF10374.9	1.5e-24	1	1
ENSPKIP00000027367	EST1_DNA_bind	PF10373.9	3e-39	1	1
ENSPKIP00000027333	EST1_DNA_bind	PF10373.9	2.1e-30	1	1
ENSPKIP00000027333	PIN_4	PF13638.6	5.4e-06	1	1
ENSPKIP00000027367	PIN_4	PF13638.6	6.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000008134	-	7947	-	ENSPKIP00000027367	1084 (aa)	XP_023657280	UPI000CD66222
ENSPKIT00000008100	-	3006	-	ENSPKIP00000027333	1001 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000009402's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000009402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000009402	smg5	99	65.664	ENSG00000198952	SMG5	99	65.414	Homo_sapiens
ENSPKIG00000009402	smg5	99	78.711	ENSAPOG00000019690	smg5	99	78.809	Acanthochromis_polyacanthus
ENSPKIG00000009402	smg5	98	65.179	ENSAMEG00000014458	SMG5	100	64.300	Ailuropoda_melanoleuca
ENSPKIG00000009402	smg5	100	76.600	ENSACIG00000001353	smg5	100	76.689	Amphilophus_citrinellus
ENSPKIG00000009402	smg5	100	77.087	ENSAOCG00000019483	smg5	100	76.413	Amphiprion_ocellaris
ENSPKIG00000009402	smg5	100	77.176	ENSAPEG00000022949	smg5	100	76.502	Amphiprion_percula
ENSPKIG00000009402	smg5	100	77.033	ENSATEG00000005348	smg5	100	77.608	Anabas_testudineus
ENSPKIG00000009402	smg5	98	65.604	ENSAPLG00000010263	SMG5	100	65.377	Anas_platyrhynchos
ENSPKIG00000009402	smg5	99	66.051	ENSANAG00000032899	SMG5	99	65.830	Aotus_nancymaae
ENSPKIG00000009402	smg5	100	75.839	ENSACLG00000009311	smg5	100	76.414	Astatotilapia_calliptera
ENSPKIG00000009402	smg5	100	78.708	ENSAMXG00000024616	smg5	100	79.019	Astyanax_mexicanus
ENSPKIG00000009402	smg5	99	39.164	ENSBTAG00000021747	-	96	48.409	Bos_taurus
ENSPKIG00000009402	smg5	99	65.756	ENSBTAG00000009435	SMG5	99	65.625	Bos_taurus
ENSPKIG00000009402	smg5	99	65.856	ENSCJAG00000005684	SMG5	99	65.637	Callithrix_jacchus
ENSPKIG00000009402	smg5	99	66.568	ENSCAFG00000016839	SMG5	99	65.456	Canis_familiaris
ENSPKIG00000009402	smg5	99	66.568	ENSCAFG00020006061	SMG5	99	65.456	Canis_lupus_dingo
ENSPKIG00000009402	smg5	99	65.689	ENSCHIG00000007709	SMG5	99	65.558	Capra_hircus
ENSPKIG00000009402	smg5	99	39.725	ENSCHIG00000006323	-	96	49.188	Capra_hircus
ENSPKIG00000009402	smg5	99	66.406	ENSTSYG00000004099	SMG5	99	66.014	Carlito_syrichta
ENSPKIG00000009402	smg5	95	50.462	ENSCAPG00000003631	SMG5	100	50.413	Cavia_aperea
ENSPKIG00000009402	smg5	99	66.082	ENSCPOG00000015696	SMG5	99	66.049	Cavia_porcellus
ENSPKIG00000009402	smg5	99	65.856	ENSCCAG00000027409	SMG5	99	65.637	Cebus_capucinus
ENSPKIG00000009402	smg5	99	65.759	ENSCATG00000030539	SMG5	99	65.507	Cercocebus_atys
ENSPKIG00000009402	smg5	99	66.732	ENSCLAG00000003983	SMG5	99	65.953	Chinchilla_lanigera
ENSPKIG00000009402	smg5	99	65.759	ENSCSAG00000002120	SMG5	99	65.507	Chlorocebus_sabaeus
ENSPKIG00000009402	smg5	52	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSPKIG00000009402	smg5	93	65.112	ENSCPBG00000025848	SMG5	100	65.319	Chrysemys_picta_bellii
ENSPKIG00000009402	smg5	93	33.299	ENSCING00000008706	-	98	32.472	Ciona_intestinalis
ENSPKIG00000009402	smg5	99	63.343	ENSCANG00000029208	SMG5	99	62.162	Colobus_angolensis_palliatus
ENSPKIG00000009402	smg5	99	66.569	ENSCGRG00001006336	Smg5	99	65.664	Cricetulus_griseus_chok1gshd
ENSPKIG00000009402	smg5	98	66.368	ENSCGRG00000005111	Smg5	100	65.415	Cricetulus_griseus_crigri
ENSPKIG00000009402	smg5	100	76.214	ENSCSEG00000014220	smg5	100	76.019	Cynoglossus_semilaevis
ENSPKIG00000009402	smg5	100	69.544	ENSCVAG00000000529	smg5	100	70.126	Cyprinodon_variegatus
ENSPKIG00000009402	smg5	100	78.474	ENSDARG00000041481	smg5	100	79.364	Danio_rerio
ENSPKIG00000009402	smg5	92	31.847	ENSDNOG00000039862	-	99	31.368	Dasypus_novemcinctus
ENSPKIG00000009402	smg5	99	63.867	ENSDNOG00000000051	SMG5	99	62.488	Dasypus_novemcinctus
ENSPKIG00000009402	smg5	99	66.181	ENSDORG00000010382	Smg5	99	65.192	Dipodomys_ordii
ENSPKIG00000009402	smg5	75	80.583	ENSETEG00000010336	SMG5	82	80.583	Echinops_telfairi
ENSPKIG00000009402	smg5	90	44.099	ENSEBUG00000003739	smg5	98	43.983	Eptatretus_burgeri
ENSPKIG00000009402	smg5	99	66.014	ENSEASG00005019122	SMG5	99	65.141	Equus_asinus_asinus
ENSPKIG00000009402	smg5	99	65.818	ENSECAG00000001389	SMG5	99	65.531	Equus_caballus
ENSPKIG00000009402	smg5	72	77.143	ENSEEUG00000012690	SMG5	75	79.023	Erinaceus_europaeus
ENSPKIG00000009402	smg5	100	79.661	ENSELUG00000012585	smg5	100	79.501	Esox_lucius
ENSPKIG00000009402	smg5	99	65.914	ENSFCAG00000011783	SMG5	99	65.787	Felis_catus
ENSPKIG00000009402	smg5	56	70.719	ENSFALG00000001166	-	96	69.640	Ficedula_albicollis
ENSPKIG00000009402	smg5	98	65.938	ENSFDAG00000017388	SMG5	100	65.408	Fukomys_damarensis
ENSPKIG00000009402	smg5	95	69.991	ENSFHEG00000013939	smg5	98	71.014	Fundulus_heteroclitus
ENSPKIG00000009402	smg5	100	74.626	ENSGMOG00000007310	smg5	100	75.242	Gadus_morhua
ENSPKIG00000009402	smg5	99	66.699	ENSGALG00000029918	-	99	65.968	Gallus_gallus
ENSPKIG00000009402	smg5	93	82.428	ENSGAFG00000021691	smg5	100	69.444	Gambusia_affinis
ENSPKIG00000009402	smg5	100	74.669	ENSGACG00000013142	smg5	100	75.556	Gasterosteus_aculeatus
ENSPKIG00000009402	smg5	99	66.730	ENSGAGG00000016131	SMG5	99	66.349	Gopherus_agassizii
ENSPKIG00000009402	smg5	99	65.759	ENSGGOG00000010932	SMG5	99	65.507	Gorilla_gorilla
ENSPKIG00000009402	smg5	100	75.717	ENSHBUG00000008654	smg5	100	76.798	Haplochromis_burtoni
ENSPKIG00000009402	smg5	99	66.732	ENSHGLG00000019152	SMG5	99	66.113	Heterocephalus_glaber_female
ENSPKIG00000009402	smg5	89	67.573	ENSHGLG00100015948	SMG5	99	66.884	Heterocephalus_glaber_male
ENSPKIG00000009402	smg5	87	79.268	ENSHCOG00000010229	smg5	92	82.222	Hippocampus_comes
ENSPKIG00000009402	smg5	100	75.424	ENSIPUG00000006624	Smg5	100	76.444	Ictalurus_punctatus
ENSPKIG00000009402	smg5	99	65.955	ENSSTOG00000001780	SMG5	99	65.825	Ictidomys_tridecemlineatus
ENSPKIG00000009402	smg5	99	65.561	ENSJJAG00000022763	Smg5	99	64.797	Jaculus_jaculus
ENSPKIG00000009402	smg5	100	75.776	ENSKMAG00000014586	smg5	100	76.486	Kryptolebias_marmoratus
ENSPKIG00000009402	smg5	100	76.908	ENSLBEG00000002145	smg5	100	77.916	Labrus_bergylta
ENSPKIG00000009402	smg5	99	59.885	ENSLACG00000010521	SMG5	99	59.810	Latimeria_chalumnae
ENSPKIG00000009402	smg5	100	71.662	ENSLOCG00000008380	smg5	99	75.829	Lepisosteus_oculatus
ENSPKIG00000009402	smg5	99	65.686	ENSLAFG00000006241	SMG5	99	64.936	Loxodonta_africana
ENSPKIG00000009402	smg5	99	65.759	ENSMFAG00000045357	SMG5	99	65.507	Macaca_fascicularis
ENSPKIG00000009402	smg5	99	66.732	ENSMMUG00000000090	SMG5	99	66.275	Macaca_mulatta
ENSPKIG00000009402	smg5	99	65.661	ENSMNEG00000044425	SMG5	99	65.411	Macaca_nemestrina
ENSPKIG00000009402	smg5	99	60.819	ENSMLEG00000041192	SMG5	99	60.600	Mandrillus_leucophaeus
ENSPKIG00000009402	smg5	100	76.292	ENSMAMG00000010683	smg5	100	76.649	Mastacembelus_armatus
ENSPKIG00000009402	smg5	62	70.472	ENSMZEG00005016543	smg5	100	70.303	Maylandia_zebra
ENSPKIG00000009402	smg5	100	73.499	ENSMZEG00005015815	smg5	100	73.594	Maylandia_zebra
ENSPKIG00000009402	smg5	99	65.598	ENSMAUG00000010381	Smg5	99	65.767	Mesocricetus_auratus
ENSPKIG00000009402	smg5	55	40.174	ENSMAUG00000000043	-	96	39.478	Mesocricetus_auratus
ENSPKIG00000009402	smg5	99	66.112	ENSMICG00000002257	SMG5	99	65.092	Microcebus_murinus
ENSPKIG00000009402	smg5	99	66.244	ENSMOCG00000016590	Smg5	99	65.437	Microtus_ochrogaster
ENSPKIG00000009402	smg5	51	43.545	ENSMOCG00000008423	-	85	43.160	Microtus_ochrogaster
ENSPKIG00000009402	smg5	100	73.708	ENSMMOG00000017199	smg5	100	73.998	Mola_mola
ENSPKIG00000009402	smg5	87	65.708	ENSMODG00000016901	SMG5	98	65.714	Monodelphis_domestica
ENSPKIG00000009402	smg5	77	34.805	ENSMODG00000010675	-	87	35.417	Monodelphis_domestica
ENSPKIG00000009402	smg5	97	31.232	ENSMODG00000004511	-	99	30.943	Monodelphis_domestica
ENSPKIG00000009402	smg5	75	34.383	ENSMODG00000004735	-	86	34.646	Monodelphis_domestica
ENSPKIG00000009402	smg5	90	32.152	ENSMODG00000004532	-	86	35.338	Monodelphis_domestica
ENSPKIG00000009402	smg5	100	75.268	ENSMALG00000010375	smg5	100	75.089	Monopterus_albus
ENSPKIG00000009402	smg5	99	66.992	MGP_CAROLIEiJ_G0025163	Smg5	100	88.827	Mus_caroli
ENSPKIG00000009402	smg5	99	67.023	ENSMUSG00000001415	Smg5	99	88.827	Mus_musculus
ENSPKIG00000009402	smg5	99	66.375	MGP_PahariEiJ_G0026606	Smg5	100	89.385	Mus_pahari
ENSPKIG00000009402	smg5	99	66.926	MGP_SPRETEiJ_G0026104	Smg5	100	88.827	Mus_spretus
ENSPKIG00000009402	smg5	93	65.308	ENSMPUG00000004546	SMG5	100	64.724	Mustela_putorius_furo
ENSPKIG00000009402	smg5	99	66.181	ENSMLUG00000008518	SMG5	99	65.381	Myotis_lucifugus
ENSPKIG00000009402	smg5	80	50.000	ENSNGAG00000012101	-	96	48.471	Nannospalax_galili
ENSPKIG00000009402	smg5	99	67.028	ENSNGAG00000020706	Smg5	99	65.986	Nannospalax_galili
ENSPKIG00000009402	smg5	96	75.127	ENSNBRG00000004332	smg5	97	75.533	Neolamprologus_brichardi
ENSPKIG00000009402	smg5	99	65.567	ENSNLEG00000012439	SMG5	99	65.318	Nomascus_leucogenys
ENSPKIG00000009402	smg5	99	64.300	ENSMEUG00000012834	SMG5	99	64.313	Notamacropus_eugenii
ENSPKIG00000009402	smg5	99	64.899	ENSOPRG00000009152	SMG5	99	65.209	Ochotona_princeps
ENSPKIG00000009402	smg5	99	67.025	ENSODEG00000012237	SMG5	99	66.211	Octodon_degus
ENSPKIG00000009402	smg5	100	76.178	ENSONIG00000008632	smg5	100	76.444	Oreochromis_niloticus
ENSPKIG00000009402	smg5	89	35.991	ENSOCUG00000023338	-	91	45.823	Oryctolagus_cuniculus
ENSPKIG00000009402	smg5	98	66.434	ENSOCUG00000012886	SMG5	100	65.968	Oryctolagus_cuniculus
ENSPKIG00000009402	smg5	100	75.313	ENSORLG00000016239	smg5	100	75.982	Oryzias_latipes
ENSPKIG00000009402	smg5	100	76.047	ENSORLG00020013127	smg5	100	76.826	Oryzias_latipes_hni
ENSPKIG00000009402	smg5	100	75.413	ENSORLG00015019014	smg5	100	76.676	Oryzias_latipes_hsok
ENSPKIG00000009402	smg5	83	73.319	ENSOMEG00000021330	smg5	92	74.334	Oryzias_melastigma
ENSPKIG00000009402	smg5	99	65.490	ENSOGAG00000004966	SMG5	99	64.981	Otolemur_garnettii
ENSPKIG00000009402	smg5	99	65.591	ENSOARG00000005778	SMG5	99	65.460	Ovis_aries
ENSPKIG00000009402	smg5	99	39.941	ENSOARG00000011963	-	99	39.441	Ovis_aries
ENSPKIG00000009402	smg5	99	65.567	ENSPPAG00000011996	SMG5	99	65.318	Pan_paniscus
ENSPKIG00000009402	smg5	98	66.134	ENSPPRG00000011901	SMG5	100	65.308	Panthera_pardus
ENSPKIG00000009402	smg5	97	62.107	ENSPTIG00000007892	SMG5	95	62.998	Panthera_tigris_altaica
ENSPKIG00000009402	smg5	99	65.567	ENSPTRG00000023925	SMG5	99	65.318	Pan_troglodytes
ENSPKIG00000009402	smg5	86	79.083	ENSPTRG00000049282	-	86	78.797	Pan_troglodytes
ENSPKIG00000009402	smg5	99	65.759	ENSPANG00000011201	SMG5	99	65.507	Papio_anubis
ENSPKIG00000009402	smg5	98	66.931	ENSPSIG00000015198	SMG5	100	66.403	Pelodiscus_sinensis
ENSPKIG00000009402	smg5	100	69.569	ENSPMGG00000010465	smg5	100	69.640	Periophthalmus_magnuspinnatus
ENSPKIG00000009402	smg5	57	39.404	ENSPEMG00000010022	-	97	40.306	Peromyscus_maniculatus_bairdii
ENSPKIG00000009402	smg5	99	66.569	ENSPEMG00000001819	Smg5	99	65.504	Peromyscus_maniculatus_bairdii
ENSPKIG00000009402	smg5	85	63.342	ENSPMAG00000000410	smg5	99	48.362	Petromyzon_marinus
ENSPKIG00000009402	smg5	99	65.689	ENSPCIG00000018938	SMG5	99	65.661	Phascolarctos_cinereus
ENSPKIG00000009402	smg5	100	75.627	ENSPFOG00000010191	smg5	100	76.344	Poecilia_formosa
ENSPKIG00000009402	smg5	100	75.269	ENSPLAG00000009332	smg5	100	76.254	Poecilia_latipinna
ENSPKIG00000009402	smg5	100	76.075	ENSPMEG00000014105	smg5	100	76.555	Poecilia_mexicana
ENSPKIG00000009402	smg5	100	75.717	ENSPREG00000017713	smg5	100	76.434	Poecilia_reticulata
ENSPKIG00000009402	smg5	99	65.664	ENSPPYG00000000723	SMG5	99	65.414	Pongo_abelii
ENSPKIG00000009402	smg5	74	76.667	ENSPCAG00000008412	SMG5	81	76.667	Procavia_capensis
ENSPKIG00000009402	smg5	99	65.851	ENSPCOG00000004741	SMG5	99	65.340	Propithecus_coquereli
ENSPKIG00000009402	smg5	99	60.429	ENSPVAG00000016748	SMG5	99	59.666	Pteropus_vampyrus
ENSPKIG00000009402	smg5	100	75.376	ENSPNYG00000013397	smg5	100	75.685	Pundamilia_nyererei
ENSPKIG00000009402	smg5	100	78.545	ENSPNAG00000028363	smg5	100	78.727	Pygocentrus_nattereri
ENSPKIG00000009402	smg5	99	66.699	ENSRNOG00000019590	Smg5	99	65.601	Rattus_norvegicus
ENSPKIG00000009402	smg5	99	65.759	ENSRBIG00000027428	SMG5	99	65.507	Rhinopithecus_bieti
ENSPKIG00000009402	smg5	99	65.661	ENSRROG00000030035	SMG5	99	65.411	Rhinopithecus_roxellana
ENSPKIG00000009402	smg5	99	65.856	ENSSBOG00000033339	SMG5	99	65.637	Saimiri_boliviensis_boliviensis
ENSPKIG00000009402	smg5	77	40.199	ENSSHAG00000009572	-	79	40.943	Sarcophilus_harrisii
ENSPKIG00000009402	smg5	80	32.982	ENSSHAG00000000561	-	98	32.596	Sarcophilus_harrisii
ENSPKIG00000009402	smg5	56	36.364	ENSSHAG00000000935	-	83	36.869	Sarcophilus_harrisii
ENSPKIG00000009402	smg5	98	64.665	ENSSHAG00000014163	SMG5	100	64.579	Sarcophilus_harrisii
ENSPKIG00000009402	smg5	100	83.424	ENSSFOG00015024175	smg5	100	83.515	Scleropages_formosus
ENSPKIG00000009402	smg5	100	76.533	ENSSMAG00000013059	smg5	100	76.690	Scophthalmus_maximus
ENSPKIG00000009402	smg5	100	75.841	ENSSDUG00000007122	smg5	100	76.283	Seriola_dumerili
ENSPKIG00000009402	smg5	100	76.288	ENSSLDG00000011418	smg5	100	76.821	Seriola_lalandi_dorsalis
ENSPKIG00000009402	smg5	90	59.935	ENSSARG00000012484	SMG5	99	59.783	Sorex_araneus
ENSPKIG00000009402	smg5	93	64.040	ENSSPUG00000002260	SMG5	100	63.737	Sphenodon_punctatus
ENSPKIG00000009402	smg5	100	76.241	ENSSPAG00000014266	smg5	100	76.253	Stegastes_partitus
ENSPKIG00000009402	smg5	99	51.917	ENSSSCG00000039308	-	99	51.765	Sus_scrofa
ENSPKIG00000009402	smg5	99	66.146	ENSSSCG00000006490	-	100	64.736	Sus_scrofa
ENSPKIG00000009402	smg5	99	67.483	ENSTGUG00000003748	-	99	67.220	Taeniopygia_guttata
ENSPKIG00000009402	smg5	100	73.108	ENSTRUG00000012580	smg5	100	73.708	Takifugu_rubripes
ENSPKIG00000009402	smg5	99	74.759	ENSTNIG00000010303	smg5	99	74.687	Tetraodon_nigroviridis
ENSPKIG00000009402	smg5	54	83.251	ENSTBEG00000002777	SMG5	59	83.251	Tupaia_belangeri
ENSPKIG00000009402	smg5	99	62.268	ENSTTRG00000001401	SMG5	99	61.009	Tursiops_truncatus
ENSPKIG00000009402	smg5	99	65.818	ENSUAMG00000013721	SMG5	99	65.239	Ursus_americanus
ENSPKIG00000009402	smg5	92	75.062	ENSUMAG00000018041	SMG5	98	72.158	Ursus_maritimus
ENSPKIG00000009402	smg5	92	67.822	ENSVPAG00000009446	SMG5	99	56.522	Vicugna_pacos
ENSPKIG00000009402	smg5	99	66.075	ENSVVUG00000005887	SMG5	99	65.745	Vulpes_vulpes
ENSPKIG00000009402	smg5	78	55.972	ENSXETG00000033791	SMG5	99	55.504	Xenopus_tropicalis
ENSPKIG00000009402	smg5	86	85.405	ENSXCOG00000004379	smg5	99	86.264	Xiphophorus_couchianus
ENSPKIG00000009402	smg5	100	75.553	ENSXMAG00000013499	smg5	100	76.058	Xiphophorus_maculatus