EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000009858 (Gene tree)
Gene ID: 111849008
Gene Symbol: polr1c
Alias: -
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 16379 bases
Position: chrPGUA01000189.1:1049274-1065652
Accession: 111849008
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000028062	RNA_pol_A_bac	PF01000.26	2.7e-30	1	1
ENSPKIP00000028084	RNA_pol_A_bac	PF01000.26	1.5e-26	1	1
ENSPKIP00000028084	RNA_pol_L	PF01193.24	5.9e-22	1	1
ENSPKIP00000028062	RNA_pol_L	PF01193.24	8.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000008860	-	894	-	ENSPKIP00000028084	297 (aa)	-	-
ENSPKIT00000008838	-	3499	-	ENSPKIP00000028062	347 (aa)	XP_023677245	UPI000CD6019F

Gene Model

Click here to download ENSPKIG00000009858's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03020	RNA polymerase	KEGG
pki04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000009858's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000009858	polr1c	100	75.216	ENSG00000171453	POLR1C	100	80.645	Homo_sapiens
ENSPKIG00000009858	polr1c	100	82.051	ENSAPOG00000024356	polr1c	100	82.621	Acanthochromis_polyacanthus
ENSPKIG00000009858	polr1c	98	75.367	ENSAMEG00000012205	POLR1C	98	75.367	Ailuropoda_melanoleuca
ENSPKIG00000009858	polr1c	94	68.882	ENSACIG00000016268	polr1c	91	69.486	Amphilophus_citrinellus
ENSPKIG00000009858	polr1c	100	79.772	ENSAOCG00000011687	polr1c	97	80.342	Amphiprion_ocellaris
ENSPKIG00000009858	polr1c	100	80.057	ENSAPEG00000002433	polr1c	100	80.627	Amphiprion_percula
ENSPKIG00000009858	polr1c	99	80.802	ENSATEG00000005985	polr1c	99	80.802	Anabas_testudineus
ENSPKIG00000009858	polr1c	86	73.333	ENSAPLG00000002908	POLR1C	100	73.333	Anas_platyrhynchos
ENSPKIG00000009858	polr1c	88	73.529	ENSACAG00000009764	POLR1C	87	73.529	Anolis_carolinensis
ENSPKIG00000009858	polr1c	100	74.640	ENSANAG00000025805	POLR1C	99	74.640	Aotus_nancymaae
ENSPKIG00000009858	polr1c	100	82.155	ENSACLG00000006573	polr1c	100	82.155	Astatotilapia_calliptera
ENSPKIG00000009858	polr1c	58	30.622	ENSACLG00000004854	polr2c	83	30.622	Astatotilapia_calliptera
ENSPKIG00000009858	polr1c	100	83.573	ENSAMXG00000012062	polr1c	100	83.165	Astyanax_mexicanus
ENSPKIG00000009858	polr1c	100	74.928	ENSBTAG00000018969	POLR1C	100	74.928	Bos_taurus
ENSPKIG00000009858	polr1c	96	46.307	WBGene00019275	rpac-40	94	46.307	Caenorhabditis_elegans
ENSPKIG00000009858	polr1c	100	74.063	ENSCJAG00000005594	POLR1C	100	74.063	Callithrix_jacchus
ENSPKIG00000009858	polr1c	100	74.928	ENSCAFG00000001872	POLR1C	100	74.928	Canis_familiaris
ENSPKIG00000009858	polr1c	100	74.928	ENSCAFG00020012018	POLR1C	100	74.928	Canis_lupus_dingo
ENSPKIG00000009858	polr1c	62	30.180	ENSCAFG00020007660	POLR2C	62	30.180	Canis_lupus_dingo
ENSPKIG00000009858	polr1c	100	74.425	ENSCHIG00000004352	POLR1C	100	74.425	Capra_hircus
ENSPKIG00000009858	polr1c	100	75.216	ENSTSYG00000011921	POLR1C	100	75.216	Carlito_syrichta
ENSPKIG00000009858	polr1c	88	75.244	ENSCAPG00000015364	POLR1C	88	75.244	Cavia_aperea
ENSPKIG00000009858	polr1c	100	75.504	ENSCPOG00000038098	POLR1C	100	75.504	Cavia_porcellus
ENSPKIG00000009858	polr1c	100	74.640	ENSCCAG00000020169	POLR1C	100	74.640	Cebus_capucinus
ENSPKIG00000009858	polr1c	100	75.216	ENSCATG00000044045	POLR1C	100	75.216	Cercocebus_atys
ENSPKIG00000009858	polr1c	62	30.180	ENSCLAG00000013676	POLR2C	54	30.180	Chinchilla_lanigera
ENSPKIG00000009858	polr1c	100	75.793	ENSCLAG00000009266	POLR1C	100	75.793	Chinchilla_lanigera
ENSPKIG00000009858	polr1c	100	74.640	ENSCSAG00000011913	POLR1C	100	74.640	Chlorocebus_sabaeus
ENSPKIG00000009858	polr1c	61	71.698	ENSCHOG00000006601	POLR1C	100	71.698	Choloepus_hoffmanni
ENSPKIG00000009858	polr1c	99	76.232	ENSCPBG00000025203	POLR1C	99	76.232	Chrysemys_picta_bellii
ENSPKIG00000009858	polr1c	99	55.977	ENSCING00000003563	-	99	55.977	Ciona_intestinalis
ENSPKIG00000009858	polr1c	100	74.928	ENSCANG00000043167	POLR1C	100	74.928	Colobus_angolensis_palliatus
ENSPKIG00000009858	polr1c	100	74.063	ENSCGRG00001017533	Polr1c	100	74.063	Cricetulus_griseus_chok1gshd
ENSPKIG00000009858	polr1c	86	75.503	ENSCGRG00000013225	Polr1c	99	75.503	Cricetulus_griseus_crigri
ENSPKIG00000009858	polr1c	100	80.115	ENSCSEG00000018097	polr1c	100	80.115	Cynoglossus_semilaevis
ENSPKIG00000009858	polr1c	61	81.604	ENSCVAG00000005684	polr1c	88	80.000	Cyprinodon_variegatus
ENSPKIG00000009858	polr1c	63	30.213	ENSCVAG00000017931	polr2c	89	30.213	Cyprinodon_variegatus
ENSPKIG00000009858	polr1c	100	82.421	ENSDARG00000039400	polr1c	96	82.421	Danio_rerio
ENSPKIG00000009858	polr1c	100	75.504	ENSDNOG00000042693	POLR1C	100	75.504	Dasypus_novemcinctus
ENSPKIG00000009858	polr1c	100	75.504	ENSDORG00000000429	Polr1c	100	75.504	Dipodomys_ordii
ENSPKIG00000009858	polr1c	90	53.185	FBgn0031657	CG3756	93	53.185	Drosophila_melanogaster
ENSPKIG00000009858	polr1c	99	70.725	ENSETEG00000010807	POLR1C	99	70.725	Echinops_telfairi
ENSPKIG00000009858	polr1c	99	69.565	ENSEBUG00000013725	polr1c	99	69.565	Eptatretus_burgeri
ENSPKIG00000009858	polr1c	100	74.928	ENSEASG00005003338	POLR1C	100	74.928	Equus_asinus_asinus
ENSPKIG00000009858	polr1c	100	74.928	ENSECAG00000023516	POLR1C	100	73.737	Equus_caballus
ENSPKIG00000009858	polr1c	99	75.942	ENSEEUG00000005471	POLR1C	99	75.942	Erinaceus_europaeus
ENSPKIG00000009858	polr1c	100	81.844	ENSELUG00000013027	polr1c	100	81.844	Esox_lucius
ENSPKIG00000009858	polr1c	100	74.352	ENSFCAG00000009735	POLR1C	100	74.352	Felis_catus
ENSPKIG00000009858	polr1c	93	73.375	ENSFALG00000012111	POLR1C	100	73.375	Ficedula_albicollis
ENSPKIG00000009858	polr1c	100	74.352	ENSFDAG00000008428	POLR1C	100	74.352	Fukomys_damarensis
ENSPKIG00000009858	polr1c	100	78.114	ENSFHEG00000000262	polr1c	100	78.114	Fundulus_heteroclitus
ENSPKIG00000009858	polr1c	58	73.295	ENSFHEG00000013867	-	86	73.295	Fundulus_heteroclitus
ENSPKIG00000009858	polr1c	93	79.012	ENSGMOG00000013878	polr1c	100	79.012	Gadus_morhua
ENSPKIG00000009858	polr1c	100	73.199	ENSGALG00000010349	POLR1C	100	73.199	Gallus_gallus
ENSPKIG00000009858	polr1c	100	78.348	ENSGAFG00000010153	polr1c	100	78.632	Gambusia_affinis
ENSPKIG00000009858	polr1c	100	76.353	ENSGACG00000002453	polr1c	100	77.208	Gasterosteus_aculeatus
ENSPKIG00000009858	polr1c	99	75.731	ENSGAGG00000010640	POLR1C	99	75.731	Gopherus_agassizii
ENSPKIG00000009858	polr1c	100	75.216	ENSGGOG00000010903	POLR1C	100	75.216	Gorilla_gorilla
ENSPKIG00000009858	polr1c	100	74.928	ENSHBUG00000017816	polr1c	100	74.928	Haplochromis_burtoni
ENSPKIG00000009858	polr1c	58	30.622	ENSHBUG00000023040	polr2c	83	30.622	Haplochromis_burtoni
ENSPKIG00000009858	polr1c	100	74.352	ENSHGLG00000019441	POLR1C	100	74.615	Heterocephalus_glaber_female
ENSPKIG00000009858	polr1c	100	74.640	ENSHGLG00100005970	POLR1C	100	74.640	Heterocephalus_glaber_male
ENSPKIG00000009858	polr1c	99	76.791	ENSHCOG00000002179	polr1c	99	76.791	Hippocampus_comes
ENSPKIG00000009858	polr1c	99	82.507	ENSIPUG00000024464	polr1c	99	82.507	Ictalurus_punctatus
ENSPKIG00000009858	polr1c	100	75.216	ENSSTOG00000010631	POLR1C	100	75.216	Ictidomys_tridecemlineatus
ENSPKIG00000009858	polr1c	62	30.180	ENSSTOG00000015150	-	51	30.180	Ictidomys_tridecemlineatus
ENSPKIG00000009858	polr1c	100	74.640	ENSJJAG00000023110	Polr1c	100	74.640	Jaculus_jaculus
ENSPKIG00000009858	polr1c	100	77.441	ENSKMAG00000014305	polr1c	100	77.441	Kryptolebias_marmoratus
ENSPKIG00000009858	polr1c	100	80.912	ENSLBEG00000014925	polr1c	100	81.481	Labrus_bergylta
ENSPKIG00000009858	polr1c	95	58.735	ENSLACG00000012567	POLR1C	98	58.735	Latimeria_chalumnae
ENSPKIG00000009858	polr1c	100	82.997	ENSLOCG00000016710	polr1c	96	82.997	Lepisosteus_oculatus
ENSPKIG00000009858	polr1c	60	31.019	ENSLAFG00000027230	POLR2C	74	31.019	Loxodonta_africana
ENSPKIG00000009858	polr1c	86	76.080	ENSLAFG00000026248	POLR1C	100	76.080	Loxodonta_africana
ENSPKIG00000009858	polr1c	100	74.928	ENSMFAG00000046295	POLR1C	100	74.928	Macaca_fascicularis
ENSPKIG00000009858	polr1c	100	74.928	ENSMMUG00000015192	POLR1C	100	74.928	Macaca_mulatta
ENSPKIG00000009858	polr1c	100	74.928	ENSMNEG00000028073	POLR1C	100	74.928	Macaca_nemestrina
ENSPKIG00000009858	polr1c	100	74.928	ENSMLEG00000034818	POLR1C	100	74.928	Mandrillus_leucophaeus
ENSPKIG00000009858	polr1c	100	81.145	ENSMAMG00000008700	polr1c	100	81.145	Mastacembelus_armatus
ENSPKIG00000009858	polr1c	100	81.818	ENSMZEG00005018545	polr1c	100	81.818	Maylandia_zebra
ENSPKIG00000009858	polr1c	84	69.759	ENSMGAG00000011020	POLR1C	100	69.759	Meleagris_gallopavo
ENSPKIG00000009858	polr1c	100	74.063	ENSMAUG00000014329	Polr1c	100	74.063	Mesocricetus_auratus
ENSPKIG00000009858	polr1c	100	73.487	ENSMICG00000005027	POLR1C	100	73.487	Microcebus_murinus
ENSPKIG00000009858	polr1c	100	74.063	ENSMOCG00000017549	Polr1c	100	74.063	Microtus_ochrogaster
ENSPKIG00000009858	polr1c	99	77.551	ENSMMOG00000005380	polr1c	99	77.551	Mola_mola
ENSPKIG00000009858	polr1c	84	75.945	ENSMODG00000018964	POLR1C	100	75.945	Monodelphis_domestica
ENSPKIG00000009858	polr1c	100	80.471	ENSMALG00000011711	polr1c	100	80.471	Monopterus_albus
ENSPKIG00000009858	polr1c	100	66.859	MGP_CAROLIEiJ_G0021662	Polr1c	100	75.769	Mus_caroli
ENSPKIG00000009858	polr1c	100	74.928	ENSMUSG00000067148	Polr1c	100	75.769	Mus_musculus
ENSPKIG00000009858	polr1c	100	74.352	MGP_PahariEiJ_G0020654	Polr1c	100	75.385	Mus_pahari
ENSPKIG00000009858	polr1c	100	74.928	MGP_SPRETEiJ_G0022574	Polr1c	100	75.769	Mus_spretus
ENSPKIG00000009858	polr1c	100	74.352	ENSMPUG00000012916	POLR1C	91	74.352	Mustela_putorius_furo
ENSPKIG00000009858	polr1c	100	75.216	ENSMLUG00000017751	POLR1C	99	75.216	Myotis_lucifugus
ENSPKIG00000009858	polr1c	100	74.928	ENSNGAG00000023487	Polr1c	100	77.320	Nannospalax_galili
ENSPKIG00000009858	polr1c	100	82.155	ENSNBRG00000018742	polr1c	100	82.155	Neolamprologus_brichardi
ENSPKIG00000009858	polr1c	100	74.928	ENSNLEG00000004035	POLR1C	100	74.928	Nomascus_leucogenys
ENSPKIG00000009858	polr1c	100	62.536	ENSMEUG00000006778	POLR1C	100	62.536	Notamacropus_eugenii
ENSPKIG00000009858	polr1c	78	75.465	ENSOPRG00000000145	POLR1C	100	75.465	Ochotona_princeps
ENSPKIG00000009858	polr1c	100	75.216	ENSODEG00000015831	-	100	75.216	Octodon_degus
ENSPKIG00000009858	polr1c	63	72.603	ENSODEG00000017109	-	100	72.603	Octodon_degus
ENSPKIG00000009858	polr1c	100	81.481	ENSONIG00000013133	polr1c	98	82.051	Oreochromis_niloticus
ENSPKIG00000009858	polr1c	99	71.594	ENSOANG00000003043	POLR1C	99	71.594	Ornithorhynchus_anatinus
ENSPKIG00000009858	polr1c	100	73.775	ENSOCUG00000005504	POLR1C	99	73.775	Oryctolagus_cuniculus
ENSPKIG00000009858	polr1c	99	76.437	ENSORLG00000019743	polr1c	99	76.437	Oryzias_latipes
ENSPKIG00000009858	polr1c	77	59.783	ENSORLG00020005555	polr1c	81	59.783	Oryzias_latipes_hni
ENSPKIG00000009858	polr1c	99	77.299	ENSORLG00020006489	POLR1C	99	77.299	Oryzias_latipes_hni
ENSPKIG00000009858	polr1c	99	76.724	ENSORLG00015013322	polr1c	99	76.724	Oryzias_latipes_hsok
ENSPKIG00000009858	polr1c	99	77.874	ENSOMEG00000016527	polr1c	99	77.874	Oryzias_melastigma
ENSPKIG00000009858	polr1c	99	72.911	ENSOGAG00000016318	POLR1C	99	72.911	Otolemur_garnettii
ENSPKIG00000009858	polr1c	100	74.640	ENSOARG00000007503	POLR1C	100	74.640	Ovis_aries
ENSPKIG00000009858	polr1c	100	75.216	ENSPPAG00000043678	POLR1C	100	75.216	Pan_paniscus
ENSPKIG00000009858	polr1c	100	74.352	ENSPPRG00000009760	POLR1C	100	74.352	Panthera_pardus
ENSPKIG00000009858	polr1c	100	74.352	ENSPTIG00000014813	POLR1C	100	74.352	Panthera_tigris_altaica
ENSPKIG00000009858	polr1c	100	75.216	ENSPTRG00000018202	POLR1C	100	75.216	Pan_troglodytes
ENSPKIG00000009858	polr1c	100	75.216	ENSPANG00000009025	POLR1C	99	75.216	Papio_anubis
ENSPKIG00000009858	polr1c	99	74.783	ENSPSIG00000012580	POLR1C	94	74.783	Pelodiscus_sinensis
ENSPKIG00000009858	polr1c	59	30.220	ENSPMGG00000021249	polr2c	77	31.527	Periophthalmus_magnuspinnatus
ENSPKIG00000009858	polr1c	100	80.808	ENSPMGG00000012121	polr1c	100	80.808	Periophthalmus_magnuspinnatus
ENSPKIG00000009858	polr1c	100	74.352	ENSPEMG00000006970	Polr1c	100	74.352	Peromyscus_maniculatus_bairdii
ENSPKIG00000009858	polr1c	59	30.769	ENSPMAG00000004827	polr2c	87	31.308	Petromyzon_marinus
ENSPKIG00000009858	polr1c	99	72.989	ENSPMAG00000005560	polr1c	99	72.989	Petromyzon_marinus
ENSPKIG00000009858	polr1c	100	74.352	ENSPCIG00000028137	POLR1C	100	73.737	Phascolarctos_cinereus
ENSPKIG00000009858	polr1c	100	78.348	ENSPFOG00000014357	polr1c	98	78.632	Poecilia_formosa
ENSPKIG00000009858	polr1c	100	78.348	ENSPFOG00000014342	POLR1C	100	78.632	Poecilia_formosa
ENSPKIG00000009858	polr1c	61	80.660	ENSPLAG00000004111	polr1c	99	74.477	Poecilia_latipinna
ENSPKIG00000009858	polr1c	100	78.348	ENSPMEG00000008420	polr1c	100	78.632	Poecilia_mexicana
ENSPKIG00000009858	polr1c	100	78.348	ENSPMEG00000011877	-	100	78.632	Poecilia_mexicana
ENSPKIG00000009858	polr1c	100	79.539	ENSPREG00000007985	polr1c	100	79.539	Poecilia_reticulata
ENSPKIG00000009858	polr1c	100	74.928	ENSPPYG00000016645	POLR1C	100	74.928	Pongo_abelii
ENSPKIG00000009858	polr1c	100	73.775	ENSPCOG00000024628	POLR1C	100	73.775	Propithecus_coquereli
ENSPKIG00000009858	polr1c	100	68.300	ENSPVAG00000005689	POLR1C	100	68.300	Pteropus_vampyrus
ENSPKIG00000009858	polr1c	100	80.737	ENSPNYG00000003620	polr1c	100	81.197	Pundamilia_nyererei
ENSPKIG00000009858	polr1c	100	83.285	ENSPNAG00000008443	polr1c	100	83.285	Pygocentrus_nattereri
ENSPKIG00000009858	polr1c	100	73.775	ENSRNOG00000019079	Polr1c	100	74.231	Rattus_norvegicus
ENSPKIG00000009858	polr1c	100	75.216	ENSRBIG00000007155	POLR1C	100	75.216	Rhinopithecus_bieti
ENSPKIG00000009858	polr1c	100	75.216	ENSRROG00000000257	POLR1C	100	75.216	Rhinopithecus_roxellana
ENSPKIG00000009858	polr1c	92	49.533	YPR110C	RPC40	95	49.533	Saccharomyces_cerevisiae
ENSPKIG00000009858	polr1c	54	30.151	YIL021W	RPB3	55	30.151	Saccharomyces_cerevisiae
ENSPKIG00000009858	polr1c	100	74.640	ENSSBOG00000025735	POLR1C	99	75.000	Saimiri_boliviensis_boliviensis
ENSPKIG00000009858	polr1c	100	67.723	ENSSHAG00000014456	POLR1C	100	67.723	Sarcophilus_harrisii
ENSPKIG00000009858	polr1c	100	88.473	ENSSFOG00015019860	polr1c	100	88.473	Scleropages_formosus
ENSPKIG00000009858	polr1c	100	81.556	ENSSMAG00000018865	polr1c	100	81.556	Scophthalmus_maximus
ENSPKIG00000009858	polr1c	100	82.155	ENSSDUG00000015745	polr1c	100	82.155	Seriola_dumerili
ENSPKIG00000009858	polr1c	100	81.818	ENSSLDG00000018285	polr1c	100	81.818	Seriola_lalandi_dorsalis
ENSPKIG00000009858	polr1c	99	71.137	ENSSPUG00000011822	POLR1C	99	71.137	Sphenodon_punctatus
ENSPKIG00000009858	polr1c	100	81.197	ENSSPAG00000022369	polr1c	100	81.766	Stegastes_partitus
ENSPKIG00000009858	polr1c	100	74.928	ENSSSCG00000028007	POLR1C	99	74.928	Sus_scrofa
ENSPKIG00000009858	polr1c	96	74.096	ENSTGUG00000009159	POLR1C	99	74.096	Taeniopygia_guttata
ENSPKIG00000009858	polr1c	100	76.638	ENSTRUG00000006264	polr1c	100	76.638	Takifugu_rubripes
ENSPKIG00000009858	polr1c	51	74.157	ENSTBEG00000002254	POLR1C	100	74.157	Tupaia_belangeri
ENSPKIG00000009858	polr1c	76	74.144	ENSTTRG00000006344	POLR1C	76	74.144	Tursiops_truncatus
ENSPKIG00000009858	polr1c	99	75.802	ENSUAMG00000025602	POLR1C	99	75.802	Ursus_americanus
ENSPKIG00000009858	polr1c	99	75.802	ENSUMAG00000005938	POLR1C	99	75.802	Ursus_maritimus
ENSPKIG00000009858	polr1c	100	73.737	ENSVVUG00000028922	POLR1C	100	73.737	Vulpes_vulpes
ENSPKIG00000009858	polr1c	99	71.720	ENSXETG00000010882	polr1c	99	71.720	Xenopus_tropicalis
ENSPKIG00000009858	polr1c	100	79.598	ENSXCOG00000014185	polr1c	100	79.598	Xiphophorus_couchianus
ENSPKIG00000009858	polr1c	100	78.917	ENSXMAG00000015076	polr1c	100	79.202	Xiphophorus_maculatus