EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000010561 (Gene tree)
Gene ID: 111836676
Gene Symbol: cirbpa
Alias: -
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 7131 bases
Position: chrPGUA01000058.1:1882413-1889543
Accession: 111836676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000029245	RRM_1	PF00076.22	9.5e-27	1	1
ENSPKIP00000029262	RRM_1	PF00076.22	9.8e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000010055	-	3080	-	ENSPKIP00000029262	190 (aa)	XP_023653945	UPI000CD63257
ENSPKIT00000010039	-	3159	-	ENSPKIP00000029245	187 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000010561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000010561's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000010561	cirbpa	59	36.364	ENSPKIG00000018463	-	66	32.000
ENSPKIG00000010561	cirbpa	60	35.714	ENSPKIG00000015703	-	52	33.784
ENSPKIG00000010561	cirbpa	70	37.500	ENSPKIG00000006999	elavl4	58	37.500
ENSPKIG00000010561	cirbpa	50	78.302	ENSPKIG00000024430	CIRBP	63	92.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000010561	cirbpa	99	63.102	ENSACLG00000002094	-	99	61.497	Astatotilapia_calliptera
ENSPKIG00000010561	cirbpa	100	63.874	ENSHBUG00000022060	cirbpa	100	62.304	Haplochromis_burtoni
ENSPKIG00000010561	cirbpa	100	63.874	ENSMZEG00005025577	-	100	62.304	Maylandia_zebra
ENSPKIG00000010561	cirbpa	100	63.874	ENSNBRG00000019658	cirbpa	100	62.304	Neolamprologus_brichardi
ENSPKIG00000010561	cirbpa	100	63.874	ENSPNYG00000007198	-	100	62.304	Pundamilia_nyererei
ENSPKIG00000010561	cirbpa	100	88.482	ENSSFOG00015009951	cirbpa	100	86.387	Scleropages_formosus
ENSPKIG00000010561	cirbpa	100	78.125	ENSSFOG00015005346	cirbpb	55	89.320	Scleropages_formosus
ENSPKIG00000010561	cirbpa	100	59.474	ENSTRUG00000010187	cirbpa	59	80.000	Takifugu_rubripes
ENSPKIG00000010561	cirbpa	100	66.845	ENSXCOG00000008262	cirbpa	92	72.603	Xiphophorus_couchianus