EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000011096 (Gene tree)
Gene ID: 111847277
Gene Symbol: smn1
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 2500 bases
Position: chrPGUA01000167.1:171592-174091
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000030252	TUDOR	PF00567.24	2.7e-05	1	1
ENSPKIP00000030234	TUDOR	PF00567.24	3.2e-05	1	1
ENSPKIP00000030234	SMN	PF06003.12	4.2e-108	1	1
ENSPKIP00000030252	SMN	PF06003.12	3.3e-94	1	2
ENSPKIP00000030252	SMN	PF06003.12	3.3e-94	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000011046	-	837	-	ENSPKIP00000030234	278 (aa)	-	-
ENSPKIT00000011065	-	768	-	ENSPKIP00000030252	255 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000011096's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000011096's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000011096	smn1	51	33.083	ENSPKIG00000003398	-	94	33.835

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000011096	smn1	93	53.942	ENSG00000172062	SMN1	76	91.892	Homo_sapiens
ENSPKIG00000011096	smn1	93	53.942	ENSG00000205571	SMN2	76	91.892	Homo_sapiens
ENSPKIG00000011096	smn1	100	58.947	ENSAPOG00000011324	smn1	100	59.649	Acanthochromis_polyacanthus
ENSPKIG00000011096	smn1	94	54.682	ENSAMEG00000003316	-	89	52.688	Ailuropoda_melanoleuca
ENSPKIG00000011096	smn1	67	60.234	ENSACIG00000007598	smn1	99	59.341	Amphilophus_citrinellus
ENSPKIG00000011096	smn1	93	56.061	ENSACIG00000019772	-	99	55.805	Amphilophus_citrinellus
ENSPKIG00000011096	smn1	100	57.857	ENSAOCG00000024444	smn1	100	60.351	Amphiprion_ocellaris
ENSPKIG00000011096	smn1	100	59.649	ENSAPEG00000016504	smn1	100	60.351	Amphiprion_percula
ENSPKIG00000011096	smn1	95	59.926	ENSATEG00000002182	smn1	82	60.294	Anabas_testudineus
ENSPKIG00000011096	smn1	70	38.356	ENSAPLG00000010912	-	98	45.000	Anas_platyrhynchos
ENSPKIG00000011096	smn1	98	50.714	ENSACAG00000010017	-	96	51.786	Anolis_carolinensis
ENSPKIG00000011096	smn1	96	45.517	ENSANAG00000032133	-	95	52.613	Aotus_nancymaae
ENSPKIG00000011096	smn1	94	61.654	ENSACLG00000007308	smn1	94	59.431	Astatotilapia_calliptera
ENSPKIG00000011096	smn1	100	62.989	ENSAMXG00000013884	smn1	100	61.484	Astyanax_mexicanus
ENSPKIG00000011096	smn1	94	52.045	ENSBTAG00000005743	SMN2	93	50.542	Bos_taurus
ENSPKIG00000011096	smn1	93	55.328	ENSCJAG00000016290	-	76	91.892	Callithrix_jacchus
ENSPKIG00000011096	smn1	94	52.060	ENSCAFG00000007812	SMN	92	51.799	Canis_familiaris
ENSPKIG00000011096	smn1	94	52.060	ENSCAFG00020019229	-	86	51.799	Canis_lupus_dingo
ENSPKIG00000011096	smn1	94	50.719	ENSCHIG00000015559	-	91	50.719	Capra_hircus
ENSPKIG00000011096	smn1	94	53.008	ENSTSYG00000012058	-	72	91.892	Carlito_syrichta
ENSPKIG00000011096	smn1	72	43.902	ENSCAPG00000011021	-	84	46.114	Cavia_aperea
ENSPKIG00000011096	smn1	97	49.296	ENSCPOG00000036973	-	93	50.526	Cavia_porcellus
ENSPKIG00000011096	smn1	97	48.097	ENSCPOG00000012328	-	94	49.481	Cavia_porcellus
ENSPKIG00000011096	smn1	93	54.918	ENSCCAG00000018127	-	70	91.892	Cebus_capucinus
ENSPKIG00000011096	smn1	93	54.357	ENSCATG00000037002	-	76	91.892	Cercocebus_atys
ENSPKIG00000011096	smn1	94	50.370	ENSCLAG00000000284	-	91	50.800	Chinchilla_lanigera
ENSPKIG00000011096	smn1	94	52.985	ENSCSAG00000015688	-	91	51.087	Chlorocebus_sabaeus
ENSPKIG00000011096	smn1	69	76.667	ENSCHOG00000007346	-	100	46.154	Choloepus_hoffmanni
ENSPKIG00000011096	smn1	96	50.916	ENSCPBG00000010968	-	97	54.789	Chrysemys_picta_bellii
ENSPKIG00000011096	smn1	93	55.187	ENSCANG00000038242	-	76	91.892	Colobus_angolensis_palliatus
ENSPKIG00000011096	smn1	93	50.000	ENSCANG00000033324	-	90	50.000	Colobus_angolensis_palliatus
ENSPKIG00000011096	smn1	97	52.015	ENSCGRG00001017959	-	92	49.624	Cricetulus_griseus_chok1gshd
ENSPKIG00000011096	smn1	94	39.313	ENSCGRG00001016998	-	91	37.591	Cricetulus_griseus_chok1gshd
ENSPKIG00000011096	smn1	97	52.015	ENSCGRG00000007698	Smn1	92	49.624	Cricetulus_griseus_crigri
ENSPKIG00000011096	smn1	96	50.526	ENSCSEG00000015227	smn1	99	52.069	Cynoglossus_semilaevis
ENSPKIG00000011096	smn1	100	53.125	ENSCVAG00000007498	smn1	100	55.517	Cyprinodon_variegatus
ENSPKIG00000011096	smn1	100	56.401	ENSDARG00000018494	smn1	100	60.777	Danio_rerio
ENSPKIG00000011096	smn1	75	48.131	ENSDNOG00000007283	-	82	48.325	Dasypus_novemcinctus
ENSPKIG00000011096	smn1	66	47.647	ENSDNOG00000045949	-	54	52.800	Dasypus_novemcinctus
ENSPKIG00000011096	smn1	91	45.525	ENSDORG00000007082	Smn1	90	41.791	Dipodomys_ordii
ENSPKIG00000011096	smn1	66	47.953	ENSETEG00000001406	-	89	46.114	Echinops_telfairi
ENSPKIG00000011096	smn1	96	39.286	ENSEBUG00000011902	smn1	96	37.544	Eptatretus_burgeri
ENSPKIG00000011096	smn1	88	48.425	ENSEASG00005018000	-	92	45.055	Equus_asinus_asinus
ENSPKIG00000011096	smn1	94	52.416	ENSECAG00000015215	-	92	52.158	Equus_caballus
ENSPKIG00000011096	smn1	88	48.819	ENSEEUG00000015777	-	100	49.231	Erinaceus_europaeus
ENSPKIG00000011096	smn1	100	56.842	ENSELUG00000018067	smn1	100	58.214	Esox_lucius
ENSPKIG00000011096	smn1	94	51.866	ENSFCAG00000028292	SMN	55	91.892	Felis_catus
ENSPKIG00000011096	smn1	95	53.558	ENSFALG00000012320	-	95	50.746	Ficedula_albicollis
ENSPKIG00000011096	smn1	94	48.188	ENSFDAG00000017683	-	92	49.821	Fukomys_damarensis
ENSPKIG00000011096	smn1	97	58.123	ENSFHEG00000018508	smn1	100	58.214	Fundulus_heteroclitus
ENSPKIG00000011096	smn1	100	53.986	ENSGMOG00000017279	smn1	98	54.965	Gadus_morhua
ENSPKIG00000011096	smn1	95	50.936	ENSGALG00000002430	SMN	96	51.383	Gallus_gallus
ENSPKIG00000011096	smn1	100	60.536	ENSGAFG00000009501	smn1	100	60.920	Gambusia_affinis
ENSPKIG00000011096	smn1	100	57.439	ENSGACG00000010584	smn1	97	57.706	Gasterosteus_aculeatus
ENSPKIG00000011096	smn1	96	50.758	ENSGAGG00000011374	-	95	53.558	Gopherus_agassizii
ENSPKIG00000011096	smn1	99	35.354	ENSGAGG00000013639	-	97	35.567	Gopherus_agassizii
ENSPKIG00000011096	smn1	66	54.386	ENSGGOG00000026704	-	87	51.282	Gorilla_gorilla
ENSPKIG00000011096	smn1	90	54.077	ENSGGOG00000003872	-	93	54.852	Gorilla_gorilla
ENSPKIG00000011096	smn1	100	59.859	ENSHBUG00000013987	smn1	100	59.233	Haplochromis_burtoni
ENSPKIG00000011096	smn1	94	51.673	ENSHGLG00000001018	-	91	49.466	Heterocephalus_glaber_female
ENSPKIG00000011096	smn1	94	49.091	ENSHGLG00000001905	-	93	48.000	Heterocephalus_glaber_female
ENSPKIG00000011096	smn1	92	48.889	ENSHGLG00100018676	-	96	47.778	Heterocephalus_glaber_male
ENSPKIG00000011096	smn1	94	51.673	ENSHGLG00100011252	-	91	49.466	Heterocephalus_glaber_male
ENSPKIG00000011096	smn1	93	54.717	ENSHCOG00000017136	smn1	89	57.836	Hippocampus_comes
ENSPKIG00000011096	smn1	99	60.650	ENSIPUG00000012580	smn1	88	60.072	Ictalurus_punctatus
ENSPKIG00000011096	smn1	91	51.953	ENSSTOG00000012288	-	93	51.119	Ictidomys_tridecemlineatus
ENSPKIG00000011096	smn1	100	52.613	ENSKMAG00000007239	smn1	100	56.897	Kryptolebias_marmoratus
ENSPKIG00000011096	smn1	100	57.343	ENSLBEG00000022550	smn1	100	56.055	Labrus_bergylta
ENSPKIG00000011096	smn1	99	31.667	ENSLACG00000009808	-	95	33.788	Latimeria_chalumnae
ENSPKIG00000011096	smn1	100	63.953	ENSLOCG00000011339	smn1	100	62.692	Lepisosteus_oculatus
ENSPKIG00000011096	smn1	94	51.111	ENSLAFG00000003425	-	99	47.333	Loxodonta_africana
ENSPKIG00000011096	smn1	94	49.627	ENSMFAG00000008812	-	91	49.819	Macaca_fascicularis
ENSPKIG00000011096	smn1	93	54.772	ENSMFAG00000031523	SMN1	76	91.892	Macaca_fascicularis
ENSPKIG00000011096	smn1	93	54.772	ENSMMUG00000020214	SMN1	76	91.892	Macaca_mulatta
ENSPKIG00000011096	smn1	94	49.254	ENSMMUG00000030594	-	91	49.458	Macaca_mulatta
ENSPKIG00000011096	smn1	76	41.284	ENSMNEG00000036423	-	70	45.946	Macaca_nemestrina
ENSPKIG00000011096	smn1	93	54.772	ENSMNEG00000035094	-	76	91.892	Macaca_nemestrina
ENSPKIG00000011096	smn1	93	54.772	ENSMLEG00000041902	-	77	91.892	Mandrillus_leucophaeus
ENSPKIG00000011096	smn1	100	57.692	ENSMAMG00000011034	smn1	100	58.042	Mastacembelus_armatus
ENSPKIG00000011096	smn1	100	60.211	ENSMZEG00005013634	smn1	100	59.582	Maylandia_zebra
ENSPKIG00000011096	smn1	68	44.041	ENSMGAG00000008889	-	94	45.596	Meleagris_gallopavo
ENSPKIG00000011096	smn1	97	50.549	ENSMAUG00000010262	Smn1	92	49.434	Mesocricetus_auratus
ENSPKIG00000011096	smn1	79	44.796	ENSMICG00000034708	-	83	48.454	Microcebus_murinus
ENSPKIG00000011096	smn1	97	51.282	ENSMOCG00000017833	Smn1	92	49.057	Microtus_ochrogaster
ENSPKIG00000011096	smn1	96	56.716	ENSMMOG00000005504	smn1	99	57.143	Mola_mola
ENSPKIG00000011096	smn1	94	51.673	ENSMODG00000001436	-	91	53.585	Monodelphis_domestica
ENSPKIG00000011096	smn1	100	57.692	ENSMALG00000008025	smn1	100	58.042	Monopterus_albus
ENSPKIG00000011096	smn1	94	50.376	MGP_CAROLIEiJ_G0018836	Smn1	92	49.064	Mus_caroli
ENSPKIG00000011096	smn1	97	49.635	ENSMUSG00000021645	Smn1	92	49.091	Mus_musculus
ENSPKIG00000011096	smn1	94	51.515	MGP_PahariEiJ_G0015911	Smn1	92	49.275	Mus_pahari
ENSPKIG00000011096	smn1	94	49.624	MGP_SPRETEiJ_G0019718	Smn1	92	49.091	Mus_spretus
ENSPKIG00000011096	smn1	92	52.852	ENSMPUG00000014470	-	93	49.818	Mustela_putorius_furo
ENSPKIG00000011096	smn1	94	51.273	ENSMLUG00000010603	-	88	51.799	Myotis_lucifugus
ENSPKIG00000011096	smn1	97	49.825	ENSNGAG00000019833	Smn1	94	50.877	Nannospalax_galili
ENSPKIG00000011096	smn1	100	59.930	ENSNBRG00000023000	smn1	100	59.655	Neolamprologus_brichardi
ENSPKIG00000011096	smn1	93	54.357	ENSNLEG00000004454	-	76	91.892	Nomascus_leucogenys
ENSPKIG00000011096	smn1	66	46.798	ENSMEUG00000011393	-	86	51.777	Notamacropus_eugenii
ENSPKIG00000011096	smn1	88	50.192	ENSOPRG00000002015	-	100	51.527	Ochotona_princeps
ENSPKIG00000011096	smn1	91	50.575	ENSODEG00000015976	-	91	47.925	Octodon_degus
ENSPKIG00000011096	smn1	100	59.930	ENSONIG00000011799	smn1	100	59.655	Oreochromis_niloticus
ENSPKIG00000011096	smn1	94	50.370	ENSOANG00000001626	-	94	51.515	Ornithorhynchus_anatinus
ENSPKIG00000011096	smn1	94	53.008	ENSOCUG00000017097	-	91	53.532	Oryctolagus_cuniculus
ENSPKIG00000011096	smn1	97	50.178	ENSOCUG00000026649	-	94	51.399	Oryctolagus_cuniculus
ENSPKIG00000011096	smn1	94	43.382	ENSOCUG00000025183	-	74	50.242	Oryctolagus_cuniculus
ENSPKIG00000011096	smn1	100	58.042	ENSORLG00000010552	smn1	100	58.596	Oryzias_latipes
ENSPKIG00000011096	smn1	100	61.686	ENSORLG00020007936	smn1	100	61.538	Oryzias_latipes_hni
ENSPKIG00000011096	smn1	100	58.741	ENSORLG00015022425	smn1	100	57.895	Oryzias_latipes_hsok
ENSPKIG00000011096	smn1	100	59.649	ENSOMEG00000007824	smn1	100	59.298	Oryzias_melastigma
ENSPKIG00000011096	smn1	91	48.315	ENSOGAG00000031414	-	91	46.715	Otolemur_garnettii
ENSPKIG00000011096	smn1	94	50.000	ENSOARG00000005425	-	97	49.458	Ovis_aries
ENSPKIG00000011096	smn1	93	54.357	ENSPPAG00000036640	-	76	91.892	Pan_paniscus
ENSPKIG00000011096	smn1	94	50.725	ENSPPRG00000005575	-	55	91.892	Panthera_pardus
ENSPKIG00000011096	smn1	94	51.673	ENSPTIG00000007745	-	55	91.892	Panthera_tigris_altaica
ENSPKIG00000011096	smn1	93	53.942	ENSPTRG00000016955	-	77	91.892	Pan_troglodytes
ENSPKIG00000011096	smn1	94	49.627	ENSPANG00000000253	-	91	50.181	Papio_anubis
ENSPKIG00000011096	smn1	93	54.772	ENSPANG00000013601	-	76	91.892	Papio_anubis
ENSPKIG00000011096	smn1	92	52.874	ENSPSIG00000014787	-	83	52.490	Pelodiscus_sinensis
ENSPKIG00000011096	smn1	100	55.872	ENSPMGG00000012285	smn1	100	55.088	Periophthalmus_magnuspinnatus
ENSPKIG00000011096	smn1	95	41.392	ENSPMAG00000005004	smn1	93	41.176	Petromyzon_marinus
ENSPKIG00000011096	smn1	94	52.045	ENSPCIG00000025764	-	93	54.745	Phascolarctos_cinereus
ENSPKIG00000011096	smn1	100	57.895	ENSPFOG00000007786	smn1	100	57.292	Poecilia_formosa
ENSPKIG00000011096	smn1	100	60.920	ENSPLAG00000012071	smn1	100	61.303	Poecilia_latipinna
ENSPKIG00000011096	smn1	100	60.536	ENSPMEG00000017085	smn1	100	60.920	Poecilia_mexicana
ENSPKIG00000011096	smn1	100	60.536	ENSPREG00000005824	smn1	100	60.920	Poecilia_reticulata
ENSPKIG00000011096	smn1	86	44.395	ENSPPYG00000019189	-	99	40.090	Pongo_abelii
ENSPKIG00000011096	smn1	91	50.958	ENSPPYG00000015533	-	95	49.071	Pongo_abelii
ENSPKIG00000011096	smn1	94	47.292	ENSPCAG00000004187	-	97	46.947	Procavia_capensis
ENSPKIG00000011096	smn1	74	43.979	ENSPCOG00000022307	-	84	45.405	Propithecus_coquereli
ENSPKIG00000011096	smn1	94	54.307	ENSPVAG00000005977	-	91	52.878	Pteropus_vampyrus
ENSPKIG00000011096	smn1	100	59.930	ENSPNYG00000014148	smn1	100	59.655	Pundamilia_nyererei
ENSPKIG00000011096	smn1	100	62.143	ENSPNAG00000014007	smn1	87	62.143	Pygocentrus_nattereri
ENSPKIG00000011096	smn1	97	50.730	ENSRNOG00000018067	Smn1	94	48.727	Rattus_norvegicus
ENSPKIG00000011096	smn1	91	49.805	ENSRBIG00000036775	-	88	49.805	Rhinopithecus_bieti
ENSPKIG00000011096	smn1	93	55.187	ENSRBIG00000037052	-	76	91.892	Rhinopithecus_bieti
ENSPKIG00000011096	smn1	94	47.348	ENSRROG00000031088	-	90	48.315	Rhinopithecus_roxellana
ENSPKIG00000011096	smn1	93	55.187	ENSRROG00000039399	-	76	91.892	Rhinopithecus_roxellana
ENSPKIG00000011096	smn1	93	54.918	ENSSBOG00000011665	-	76	91.892	Saimiri_boliviensis_boliviensis
ENSPKIG00000011096	smn1	63	52.761	ENSSBOG00000020112	-	87	48.627	Saimiri_boliviensis_boliviensis
ENSPKIG00000011096	smn1	94	51.673	ENSSHAG00000001499	-	97	52.190	Sarcophilus_harrisii
ENSPKIG00000011096	smn1	100	69.498	ENSSFOG00015015507	smn1	100	70.656	Scleropages_formosus
ENSPKIG00000011096	smn1	100	50.523	ENSSMAG00000007922	smn1	100	55.401	Scophthalmus_maximus
ENSPKIG00000011096	smn1	100	58.537	ENSSDUG00000018533	smn1	100	60.839	Seriola_dumerili
ENSPKIG00000011096	smn1	100	58.885	ENSSLDG00000021135	smn1	100	61.189	Seriola_lalandi_dorsalis
ENSPKIG00000011096	smn1	97	54.545	ENSSPUG00000000373	-	96	52.963	Sphenodon_punctatus
ENSPKIG00000011096	smn1	100	59.398	ENSSPAG00000004345	smn1	100	59.774	Stegastes_partitus
ENSPKIG00000011096	smn1	93	39.919	ENSSSCG00000029127	-	90	42.678	Sus_scrofa
ENSPKIG00000011096	smn1	94	53.358	ENSSSCG00000016970	-	91	53.597	Sus_scrofa
ENSPKIG00000011096	smn1	91	48.014	ENSTGUG00000001548	-	95	48.106	Taeniopygia_guttata
ENSPKIG00000011096	smn1	100	53.873	ENSTRUG00000000736	smn	100	54.296	Takifugu_rubripes
ENSPKIG00000011096	smn1	96	57.609	ENSTNIG00000009892	smn1	96	56.631	Tetraodon_nigroviridis
ENSPKIG00000011096	smn1	62	55.975	ENSTBEG00000002399	-	89	49.744	Tupaia_belangeri
ENSPKIG00000011096	smn1	93	49.621	ENSTTRG00000005080	-	91	50.379	Tursiops_truncatus
ENSPKIG00000011096	smn1	62	56.604	ENSUAMG00000024947	-	56	54.545	Ursus_americanus
ENSPKIG00000011096	smn1	94	53.933	ENSUMAG00000007842	-	69	51.971	Ursus_maritimus
ENSPKIG00000011096	smn1	68	77.778	ENSVPAG00000009887	-	93	48.837	Vicugna_pacos
ENSPKIG00000011096	smn1	94	52.060	ENSVVUG00000006934	-	92	51.799	Vulpes_vulpes
ENSPKIG00000011096	smn1	55	56.364	ENSXETG00000004912	-	81	56.364	Xenopus_tropicalis
ENSPKIG00000011096	smn1	98	55.872	ENSXETG00000018189	smn2	95	54.286	Xenopus_tropicalis
ENSPKIG00000011096	smn1	100	59.770	ENSXMAG00000001521	smn1	100	60.153	Xiphophorus_maculatus