EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000011325 (Gene tree)
Gene ID: 111860277
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 5856 bases
Position: chrPGUA01000005.1:2365613-2371468
Accession: 111860277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000030494	LSM	PF01423.22	7.3e-21	1	1
ENSPKIP00000030487	LSM	PF01423.22	1.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000011315	-	2221	-	ENSPKIP00000030494	103 (aa)	XP_023699582	UPI000CD640CD
ENSPKIT00000011308	-	444	-	ENSPKIP00000030487	147 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000011325's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03018	RNA degradation	KEGG
pki03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000011325's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000011325	lsm7	69	38.028	ENSPKIG00000015072	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000011325	lsm7	100	97.087	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSPKIG00000011325	lsm7	91	97.872	ENSAPOG00000015573	lsm7	81	97.872	Acanthochromis_polyacanthus
ENSPKIG00000011325	lsm7	100	94.175	ENSAMEG00000005484	LSM7	100	94.175	Ailuropoda_melanoleuca
ENSPKIG00000011325	lsm7	95	96.939	ENSACIG00000006498	lsm7	78	96.939	Amphilophus_citrinellus
ENSPKIG00000011325	lsm7	99	97.059	ENSAOCG00000001077	lsm7	92	98.020	Amphiprion_ocellaris
ENSPKIG00000011325	lsm7	100	96.117	ENSAPEG00000024447	lsm7	92	98.020	Amphiprion_percula
ENSPKIG00000011325	lsm7	100	98.058	ENSAPEG00000000694	lsm7	100	98.058	Amphiprion_percula
ENSPKIG00000011325	lsm7	100	98.058	ENSATEG00000008557	lsm7	100	98.058	Anabas_testudineus
ENSPKIG00000011325	lsm7	100	97.087	ENSANAG00000037196	-	100	97.087	Aotus_nancymaae
ENSPKIG00000011325	lsm7	100	88.350	ENSANAG00000022222	-	100	88.350	Aotus_nancymaae
ENSPKIG00000011325	lsm7	100	97.087	ENSACLG00000021021	lsm7	100	97.087	Astatotilapia_calliptera
ENSPKIG00000011325	lsm7	100	98.058	ENSAMXG00000037622	lsm7	100	98.058	Astyanax_mexicanus
ENSPKIG00000011325	lsm7	100	97.087	ENSBTAG00000004521	LSM7	100	97.087	Bos_taurus
ENSPKIG00000011325	lsm7	97	58.000	WBGene00003081	lsm-7	98	57.843	Caenorhabditis_elegans
ENSPKIG00000011325	lsm7	54	96.429	ENSCJAG00000039713	-	68	96.429	Callithrix_jacchus
ENSPKIG00000011325	lsm7	98	96.040	ENSCAFG00000019409	LSM7	98	96.040	Canis_familiaris
ENSPKIG00000011325	lsm7	97	97.000	ENSCAFG00020018168	LSM7	74	97.000	Canis_lupus_dingo
ENSPKIG00000011325	lsm7	100	95.146	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
ENSPKIG00000011325	lsm7	69	97.183	ENSCAPG00000014534	LSM7	100	97.183	Cavia_aperea
ENSPKIG00000011325	lsm7	100	97.087	ENSCPOG00000014025	LSM7	100	97.087	Cavia_porcellus
ENSPKIG00000011325	lsm7	98	97.030	ENSCCAG00000035456	LSM7	99	97.030	Cebus_capucinus
ENSPKIG00000011325	lsm7	100	97.087	ENSCATG00000023543	LSM7	100	97.087	Cercocebus_atys
ENSPKIG00000011325	lsm7	100	97.087	ENSCLAG00000011635	LSM7	100	97.087	Chinchilla_lanigera
ENSPKIG00000011325	lsm7	100	97.087	ENSCSAG00000011599	LSM7	100	97.087	Chlorocebus_sabaeus
ENSPKIG00000011325	lsm7	70	97.222	ENSCPBG00000021317	LSM7	77	97.222	Chrysemys_picta_bellii
ENSPKIG00000011325	lsm7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSPKIG00000011325	lsm7	100	97.087	ENSCANG00000035525	LSM7	100	97.087	Colobus_angolensis_palliatus
ENSPKIG00000011325	lsm7	100	96.117	ENSCGRG00001000807	-	100	96.117	Cricetulus_griseus_chok1gshd
ENSPKIG00000011325	lsm7	87	86.667	ENSCGRG00001016005	-	92	86.667	Cricetulus_griseus_chok1gshd
ENSPKIG00000011325	lsm7	87	86.667	ENSCGRG00000006821	-	92	86.667	Cricetulus_griseus_crigri
ENSPKIG00000011325	lsm7	98	96.040	ENSCGRG00000014355	-	99	94.175	Cricetulus_griseus_crigri
ENSPKIG00000011325	lsm7	98	98.020	ENSCSEG00000014900	lsm7	86	98.020	Cynoglossus_semilaevis
ENSPKIG00000011325	lsm7	98	99.010	ENSCVAG00000021091	lsm7	95	98.058	Cyprinodon_variegatus
ENSPKIG00000011325	lsm7	100	98.058	ENSDARG00000058328	lsm7	100	98.058	Danio_rerio
ENSPKIG00000011325	lsm7	99	95.098	ENSDORG00000024460	Lsm7	100	95.098	Dipodomys_ordii
ENSPKIG00000011325	lsm7	94	74.490	FBgn0261068	LSm7	89	74.490	Drosophila_melanogaster
ENSPKIG00000011325	lsm7	98	94.059	ENSETEG00000012788	LSM7	99	94.059	Echinops_telfairi
ENSPKIG00000011325	lsm7	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSPKIG00000011325	lsm7	81	60.241	ENSEBUG00000010470	-	79	60.241	Eptatretus_burgeri
ENSPKIG00000011325	lsm7	100	93.204	ENSECAG00000001440	LSM7	66	93.204	Equus_caballus
ENSPKIG00000011325	lsm7	100	96.117	ENSFCAG00000003445	LSM7	100	96.117	Felis_catus
ENSPKIG00000011325	lsm7	98	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSPKIG00000011325	lsm7	93	96.875	ENSFDAG00000007661	LSM7	100	96.875	Fukomys_damarensis
ENSPKIG00000011325	lsm7	98	99.010	ENSFHEG00000006349	lsm7	92	98.058	Fundulus_heteroclitus
ENSPKIG00000011325	lsm7	100	94.175	ENSGMOG00000013320	lsm7	100	94.175	Gadus_morhua
ENSPKIG00000011325	lsm7	100	99.029	ENSGAFG00000013902	lsm7	100	99.029	Gambusia_affinis
ENSPKIG00000011325	lsm7	100	95.146	ENSGACG00000010390	lsm7	100	95.146	Gasterosteus_aculeatus
ENSPKIG00000011325	lsm7	100	97.087	ENSGGOG00000010172	LSM7	100	97.087	Gorilla_gorilla
ENSPKIG00000011325	lsm7	100	97.087	ENSHBUG00000004616	lsm7	100	97.087	Haplochromis_burtoni
ENSPKIG00000011325	lsm7	100	97.087	ENSHGLG00000010587	LSM7	100	97.087	Heterocephalus_glaber_female
ENSPKIG00000011325	lsm7	100	97.087	ENSHGLG00100000852	LSM7	100	97.087	Heterocephalus_glaber_male
ENSPKIG00000011325	lsm7	98	97.030	ENSHCOG00000020252	lsm7	100	97.030	Hippocampus_comes
ENSPKIG00000011325	lsm7	100	98.058	ENSIPUG00000024724	lsm7	100	98.058	Ictalurus_punctatus
ENSPKIG00000011325	lsm7	98	97.030	ENSSTOG00000028372	LSM7	99	97.030	Ictidomys_tridecemlineatus
ENSPKIG00000011325	lsm7	97	97.000	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSPKIG00000011325	lsm7	100	99.029	ENSKMAG00000022151	lsm7	100	99.029	Kryptolebias_marmoratus
ENSPKIG00000011325	lsm7	100	97.087	ENSLBEG00000005203	lsm7	100	97.087	Labrus_bergylta
ENSPKIG00000011325	lsm7	100	96.117	ENSLACG00000015700	LSM7	100	96.117	Latimeria_chalumnae
ENSPKIG00000011325	lsm7	98	99.010	ENSLOCG00000004356	lsm7	98	99.010	Lepisosteus_oculatus
ENSPKIG00000011325	lsm7	98	97.030	ENSLAFG00000029302	LSM7	100	96.117	Loxodonta_africana
ENSPKIG00000011325	lsm7	100	97.087	ENSMFAG00000044572	LSM7	100	97.087	Macaca_fascicularis
ENSPKIG00000011325	lsm7	100	97.087	ENSMMUG00000000452	LSM7	100	97.087	Macaca_mulatta
ENSPKIG00000011325	lsm7	100	97.087	ENSMNEG00000004393	LSM7	100	97.087	Macaca_nemestrina
ENSPKIG00000011325	lsm7	100	97.087	ENSMLEG00000030852	LSM7	100	97.087	Mandrillus_leucophaeus
ENSPKIG00000011325	lsm7	100	97.087	ENSMAMG00000005410	lsm7	100	97.087	Mastacembelus_armatus
ENSPKIG00000011325	lsm7	100	97.087	ENSMZEG00005028055	lsm7	100	97.087	Maylandia_zebra
ENSPKIG00000011325	lsm7	100	99.029	ENSMGAG00000000750	LSM7	89	99.029	Meleagris_gallopavo
ENSPKIG00000011325	lsm7	100	96.117	ENSMAUG00000009276	Lsm7	100	96.117	Mesocricetus_auratus
ENSPKIG00000011325	lsm7	100	97.087	ENSMICG00000028619	-	100	97.087	Microcebus_murinus
ENSPKIG00000011325	lsm7	100	96.117	ENSMICG00000009988	-	100	96.117	Microcebus_murinus
ENSPKIG00000011325	lsm7	100	96.117	ENSMOCG00000016925	Lsm7	100	96.117	Microtus_ochrogaster
ENSPKIG00000011325	lsm7	100	98.058	ENSMMOG00000019645	lsm7	98	98.058	Mola_mola
ENSPKIG00000011325	lsm7	100	98.058	ENSMODG00000004722	LSM7	100	98.058	Monodelphis_domestica
ENSPKIG00000011325	lsm7	100	97.087	ENSMALG00000014511	lsm7	79	97.087	Monopterus_albus
ENSPKIG00000011325	lsm7	99	96.078	MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	Mus_caroli
ENSPKIG00000011325	lsm7	99	96.078	ENSMUSG00000035215	Lsm7	99	96.078	Mus_musculus
ENSPKIG00000011325	lsm7	99	96.078	MGP_PahariEiJ_G0031020	Lsm7	99	96.078	Mus_pahari
ENSPKIG00000011325	lsm7	99	96.078	MGP_SPRETEiJ_G0016425	Lsm7	99	96.078	Mus_spretus
ENSPKIG00000011325	lsm7	99	91.176	ENSMLUG00000024002	-	94	91.176	Myotis_lucifugus
ENSPKIG00000011325	lsm7	100	94.175	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
ENSPKIG00000011325	lsm7	100	95.146	ENSNGAG00000021637	Lsm7	100	95.146	Nannospalax_galili
ENSPKIG00000011325	lsm7	91	97.872	ENSNBRG00000001237	-	81	97.030	Neolamprologus_brichardi
ENSPKIG00000011325	lsm7	98	97.030	ENSNBRG00000015770	lsm7	98	90.351	Neolamprologus_brichardi
ENSPKIG00000011325	lsm7	100	97.087	ENSNLEG00000002265	LSM7	100	97.087	Nomascus_leucogenys
ENSPKIG00000011325	lsm7	100	76.699	ENSODEG00000008190	-	100	76.699	Octodon_degus
ENSPKIG00000011325	lsm7	100	97.087	ENSODEG00000013590	-	100	97.087	Octodon_degus
ENSPKIG00000011325	lsm7	100	90.291	ENSODEG00000018769	-	100	90.291	Octodon_degus
ENSPKIG00000011325	lsm7	100	97.087	ENSONIG00000001801	lsm7	89	97.087	Oreochromis_niloticus
ENSPKIG00000011325	lsm7	100	98.058	ENSORLG00000023951	lsm7	100	98.058	Oryzias_latipes
ENSPKIG00000011325	lsm7	100	98.058	ENSORLG00020022226	lsm7	100	98.058	Oryzias_latipes_hni
ENSPKIG00000011325	lsm7	100	96.117	ENSORLG00015020044	lsm7	95	97.087	Oryzias_latipes_hsok
ENSPKIG00000011325	lsm7	100	98.058	ENSOMEG00000012806	lsm7	100	98.058	Oryzias_melastigma
ENSPKIG00000011325	lsm7	98	95.050	ENSOGAG00000000144	-	99	95.050	Otolemur_garnettii
ENSPKIG00000011325	lsm7	100	85.437	ENSOGAG00000024373	-	100	85.437	Otolemur_garnettii
ENSPKIG00000011325	lsm7	100	95.146	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
ENSPKIG00000011325	lsm7	100	97.087	ENSPPAG00000026500	LSM7	100	97.087	Pan_paniscus
ENSPKIG00000011325	lsm7	100	96.117	ENSPPRG00000008624	LSM7	100	96.117	Panthera_pardus
ENSPKIG00000011325	lsm7	98	96.040	ENSPTIG00000016252	LSM7	98	96.040	Panthera_tigris_altaica
ENSPKIG00000011325	lsm7	100	97.087	ENSPTRG00000010233	LSM7	100	97.087	Pan_troglodytes
ENSPKIG00000011325	lsm7	100	97.087	ENSPANG00000020668	LSM7	100	97.087	Papio_anubis
ENSPKIG00000011325	lsm7	98	99.010	ENSPSIG00000017149	LSM7	89	99.010	Pelodiscus_sinensis
ENSPKIG00000011325	lsm7	100	98.058	ENSPMGG00000006498	lsm7	100	98.058	Periophthalmus_magnuspinnatus
ENSPKIG00000011325	lsm7	100	98.058	ENSPCIG00000030454	LSM7	100	98.058	Phascolarctos_cinereus
ENSPKIG00000011325	lsm7	100	96.117	ENSPFOG00000012467	lsm7	91	96.117	Poecilia_formosa
ENSPKIG00000011325	lsm7	100	96.117	ENSPLAG00000000252	lsm7	95	97.087	Poecilia_latipinna
ENSPKIG00000011325	lsm7	100	96.117	ENSPMEG00000000587	lsm7	95	97.087	Poecilia_mexicana
ENSPKIG00000011325	lsm7	78	79.012	ENSPREG00000016718	lsm7	65	79.012	Poecilia_reticulata
ENSPKIG00000011325	lsm7	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSPKIG00000011325	lsm7	100	97.087	ENSPCOG00000017177	LSM7	100	97.087	Propithecus_coquereli
ENSPKIG00000011325	lsm7	100	97.087	ENSPNYG00000006938	lsm7	100	97.087	Pundamilia_nyererei
ENSPKIG00000011325	lsm7	100	98.058	ENSPNAG00000010141	lsm7	100	98.058	Pygocentrus_nattereri
ENSPKIG00000011325	lsm7	99	97.059	ENSRNOG00000019552	Lsm7	99	97.059	Rattus_norvegicus
ENSPKIG00000011325	lsm7	100	97.087	ENSRBIG00000035978	LSM7	100	97.087	Rhinopithecus_bieti
ENSPKIG00000011325	lsm7	100	97.087	ENSRROG00000034044	LSM7	100	97.087	Rhinopithecus_roxellana
ENSPKIG00000011325	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSPKIG00000011325	lsm7	100	97.087	ENSSBOG00000034899	LSM7	100	97.087	Saimiri_boliviensis_boliviensis
ENSPKIG00000011325	lsm7	100	98.058	ENSSFOG00015006728	lsm7	100	98.058	Scleropages_formosus
ENSPKIG00000011325	lsm7	100	96.117	ENSSMAG00000004195	lsm7	94	97.087	Scophthalmus_maximus
ENSPKIG00000011325	lsm7	100	98.058	ENSSDUG00000001863	lsm7	100	98.058	Seriola_dumerili
ENSPKIG00000011325	lsm7	100	98.058	ENSSLDG00000016339	lsm7	100	98.058	Seriola_lalandi_dorsalis
ENSPKIG00000011325	lsm7	100	98.058	ENSSPAG00000015221	lsm7	100	98.058	Stegastes_partitus
ENSPKIG00000011325	lsm7	98	97.030	ENSSSCG00000013463	LSM7	99	97.030	Sus_scrofa
ENSPKIG00000011325	lsm7	98	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSPKIG00000011325	lsm7	100	98.058	ENSTRUG00000022913	lsm7	100	98.058	Takifugu_rubripes
ENSPKIG00000011325	lsm7	100	98.058	ENSTNIG00000015525	lsm7	100	98.058	Tetraodon_nigroviridis
ENSPKIG00000011325	lsm7	68	84.286	ENSTBEG00000016602	LSM7	100	84.286	Tupaia_belangeri
ENSPKIG00000011325	lsm7	100	94.175	ENSUAMG00000000912	LSM7	89	91.589	Ursus_americanus
ENSPKIG00000011325	lsm7	97	97.000	ENSUMAG00000006556	LSM7	80	95.146	Ursus_maritimus
ENSPKIG00000011325	lsm7	69	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
ENSPKIG00000011325	lsm7	98	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSPKIG00000011325	lsm7	99	98.039	ENSXCOG00000002572	lsm7	100	98.039	Xiphophorus_couchianus
ENSPKIG00000011325	lsm7	100	99.029	ENSXMAG00000018630	lsm7	100	99.029	Xiphophorus_maculatus