EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000011645 (Gene tree)
Gene ID: 111843644
Gene Symbol: lig4
Alias: -
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 2766 bases
Position: chrPGUA01000128.1:457404-460169
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000030973	RNA_ligase	PF09414.10	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000011810	-	2766	-	ENSPKIP00000030973	921 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000011645's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000011645's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000011645	lig4	98	66.959	ENSG00000174405	LIG4	100	67.654	Homo_sapiens
ENSPKIG00000011645	lig4	99	78.328	ENSAPOG00000000866	lig4	100	78.328	Acanthochromis_polyacanthus
ENSPKIG00000011645	lig4	98	65.934	ENSAMEG00000019685	LIG4	99	65.934	Ailuropoda_melanoleuca
ENSPKIG00000011645	lig4	98	78.801	ENSACIG00000018309	lig4	99	78.801	Amphilophus_citrinellus
ENSPKIG00000011645	lig4	99	78.438	ENSAOCG00000011768	lig4	100	78.438	Amphiprion_ocellaris
ENSPKIG00000011645	lig4	99	78.658	ENSAPEG00000017815	lig4	100	78.658	Amphiprion_percula
ENSPKIG00000011645	lig4	99	78.618	ENSATEG00000005583	lig4	100	78.618	Anabas_testudineus
ENSPKIG00000011645	lig4	95	68.415	ENSAPLG00000001673	LIG4	99	68.415	Anas_platyrhynchos
ENSPKIG00000011645	lig4	98	67.991	ENSACAG00000014566	LIG4	100	67.991	Anolis_carolinensis
ENSPKIG00000011645	lig4	98	66.520	ENSANAG00000012446	LIG4	99	66.520	Aotus_nancymaae
ENSPKIG00000011645	lig4	99	77.936	ENSACLG00000027051	lig4	100	77.936	Astatotilapia_calliptera
ENSPKIG00000011645	lig4	99	77.155	ENSAMXG00000008192	lig4	96	77.155	Astyanax_mexicanus
ENSPKIG00000011645	lig4	98	66.411	ENSBTAG00000015868	LIG4	99	66.411	Bos_taurus
ENSPKIG00000011645	lig4	98	65.971	ENSCJAG00000014689	LIG4	99	65.971	Callithrix_jacchus
ENSPKIG00000011645	lig4	98	66.044	ENSCAFG00000006031	LIG4	99	66.044	Canis_familiaris
ENSPKIG00000011645	lig4	98	66.044	ENSCAFG00020021230	LIG4	99	66.044	Canis_lupus_dingo
ENSPKIG00000011645	lig4	98	66.081	ENSCHIG00000001019	LIG4	99	66.081	Capra_hircus
ENSPKIG00000011645	lig4	97	65.376	ENSCAPG00000006284	LIG4	99	65.376	Cavia_aperea
ENSPKIG00000011645	lig4	98	65.203	ENSCPOG00000014266	LIG4	99	65.203	Cavia_porcellus
ENSPKIG00000011645	lig4	98	66.520	ENSCCAG00000019971	LIG4	99	66.520	Cebus_capucinus
ENSPKIG00000011645	lig4	98	66.484	ENSCATG00000021075	LIG4	99	66.484	Cercocebus_atys
ENSPKIG00000011645	lig4	98	65.604	ENSCLAG00000003376	LIG4	99	65.604	Chinchilla_lanigera
ENSPKIG00000011645	lig4	98	66.484	ENSCSAG00000000211	LIG4	99	66.484	Chlorocebus_sabaeus
ENSPKIG00000011645	lig4	98	69.546	ENSCPBG00000023291	LIG4	100	69.037	Chrysemys_picta_bellii
ENSPKIG00000011645	lig4	69	46.958	ENSCING00000009536	-	98	46.958	Ciona_intestinalis
ENSPKIG00000011645	lig4	82	45.466	ENSCSAVG00000010336	-	98	45.466	Ciona_savignyi
ENSPKIG00000011645	lig4	98	66.264	ENSCANG00000005805	LIG4	99	66.264	Colobus_angolensis_palliatus
ENSPKIG00000011645	lig4	98	65.461	ENSCGRG00001012072	Lig4	99	65.461	Cricetulus_griseus_chok1gshd
ENSPKIG00000011645	lig4	98	65.461	ENSCGRG00000013417	Lig4	99	65.461	Cricetulus_griseus_crigri
ENSPKIG00000011645	lig4	96	76.325	ENSCSEG00000013905	lig4	96	76.325	Cynoglossus_semilaevis
ENSPKIG00000011645	lig4	99	77.363	ENSCVAG00000007896	lig4	100	77.363	Cyprinodon_variegatus
ENSPKIG00000011645	lig4	99	77.448	ENSDARG00000060620	lig4	100	77.448	Danio_rerio
ENSPKIG00000011645	lig4	98	66.338	ENSDNOG00000000513	LIG4	99	66.338	Dasypus_novemcinctus
ENSPKIG00000011645	lig4	98	67.253	ENSDORG00000027303	Lig4	99	67.253	Dipodomys_ordii
ENSPKIG00000011645	lig4	87	30.624	FBgn0030506	Lig4	91	30.624	Drosophila_melanogaster
ENSPKIG00000011645	lig4	97	63.747	ENSETEG00000015563	LIG4	100	64.302	Echinops_telfairi
ENSPKIG00000011645	lig4	98	44.456	ENSEBUG00000014243	lig4	99	44.456	Eptatretus_burgeri
ENSPKIG00000011645	lig4	98	66.520	ENSEASG00005022073	LIG4	99	66.520	Equus_asinus_asinus
ENSPKIG00000011645	lig4	98	66.630	ENSECAG00000003257	LIG4	99	66.630	Equus_caballus
ENSPKIG00000011645	lig4	98	78.658	ENSELUG00000006787	lig4	99	78.658	Esox_lucius
ENSPKIG00000011645	lig4	98	65.642	ENSFCAG00000031985	LIG4	99	65.642	Felis_catus
ENSPKIG00000011645	lig4	87	69.279	ENSFALG00000004214	LIG4	98	69.279	Ficedula_albicollis
ENSPKIG00000011645	lig4	98	65.532	ENSFDAG00000008973	LIG4	99	65.532	Fukomys_damarensis
ENSPKIG00000011645	lig4	99	77.948	ENSFHEG00000007398	lig4	91	77.948	Fundulus_heteroclitus
ENSPKIG00000011645	lig4	84	73.514	ENSGMOG00000012843	lig4	99	73.514	Gadus_morhua
ENSPKIG00000011645	lig4	99	67.105	ENSGALG00000016854	LIG4	100	67.105	Gallus_gallus
ENSPKIG00000011645	lig4	97	77.877	ENSGAFG00000019779	lig4	95	77.398	Gambusia_affinis
ENSPKIG00000011645	lig4	98	75.220	ENSGACG00000014135	lig4	99	75.220	Gasterosteus_aculeatus
ENSPKIG00000011645	lig4	98	66.740	ENSGGOG00000027771	LIG4	99	66.740	Gorilla_gorilla
ENSPKIG00000011645	lig4	99	77.717	ENSHBUG00000006245	lig4	100	77.717	Haplochromis_burtoni
ENSPKIG00000011645	lig4	98	65.532	ENSHGLG00000000718	LIG4	99	65.532	Heterocephalus_glaber_female
ENSPKIG00000011645	lig4	98	65.532	ENSHGLG00100003265	LIG4	99	65.532	Heterocephalus_glaber_male
ENSPKIG00000011645	lig4	99	74.013	ENSHCOG00000012010	lig4	100	74.013	Hippocampus_comes
ENSPKIG00000011645	lig4	99	77.228	ENSIPUG00000013748	lig4	100	77.228	Ictalurus_punctatus
ENSPKIG00000011645	lig4	98	66.227	ENSSTOG00000024303	LIG4	99	66.227	Ictidomys_tridecemlineatus
ENSPKIG00000011645	lig4	98	66.154	ENSJJAG00000006750	Lig4	99	66.154	Jaculus_jaculus
ENSPKIG00000011645	lig4	99	75.275	ENSKMAG00000001149	lig4	100	75.248	Kryptolebias_marmoratus
ENSPKIG00000011645	lig4	90	77.805	ENSLBEG00000014578	lig4	100	77.805	Labrus_bergylta
ENSPKIG00000011645	lig4	99	68.421	ENSLACG00000003282	LIG4	100	68.421	Latimeria_chalumnae
ENSPKIG00000011645	lig4	99	74.179	ENSLOCG00000008901	lig4	99	74.179	Lepisosteus_oculatus
ENSPKIG00000011645	lig4	98	64.693	ENSLAFG00000031152	LIG4	99	64.693	Loxodonta_africana
ENSPKIG00000011645	lig4	98	66.703	ENSMFAG00000037235	LIG4	99	66.703	Macaca_fascicularis
ENSPKIG00000011645	lig4	98	66.593	ENSMMUG00000008874	LIG4	99	66.593	Macaca_mulatta
ENSPKIG00000011645	lig4	98	66.703	ENSMNEG00000023575	LIG4	99	66.703	Macaca_nemestrina
ENSPKIG00000011645	lig4	98	66.264	ENSMLEG00000026720	LIG4	99	66.264	Mandrillus_leucophaeus
ENSPKIG00000011645	lig4	99	78.462	ENSMAMG00000008472	lig4	99	78.462	Mastacembelus_armatus
ENSPKIG00000011645	lig4	99	77.936	ENSMZEG00005001855	lig4	100	77.936	Maylandia_zebra
ENSPKIG00000011645	lig4	99	67.325	ENSMGAG00000015532	LIG4	100	67.325	Meleagris_gallopavo
ENSPKIG00000011645	lig4	98	64.349	ENSMOCG00000019000	Lig4	99	64.349	Microtus_ochrogaster
ENSPKIG00000011645	lig4	98	77.058	ENSMMOG00000004390	lig4	99	77.058	Mola_mola
ENSPKIG00000011645	lig4	98	66.007	ENSMODG00000025064	LIG4	99	66.374	Monodelphis_domestica
ENSPKIG00000011645	lig4	99	77.363	ENSMALG00000008555	lig4	100	77.363	Monopterus_albus
ENSPKIG00000011645	lig4	98	65.642	MGP_CAROLIEiJ_G0030809	Lig4	99	65.642	Mus_caroli
ENSPKIG00000011645	lig4	98	65.423	ENSMUSG00000049717	Lig4	99	65.423	Mus_musculus
ENSPKIG00000011645	lig4	98	65.203	MGP_PahariEiJ_G0021270	Lig4	99	65.203	Mus_pahari
ENSPKIG00000011645	lig4	98	65.423	MGP_SPRETEiJ_G0031917	Lig4	99	65.423	Mus_spretus
ENSPKIG00000011645	lig4	98	65.604	ENSMPUG00000018675	LIG4	99	65.604	Mustela_putorius_furo
ENSPKIG00000011645	lig4	98	66.411	ENSMLUG00000001267	LIG4	99	66.411	Myotis_lucifugus
ENSPKIG00000011645	lig4	98	65.495	ENSNGAG00000013258	Lig4	99	65.495	Nannospalax_galili
ENSPKIG00000011645	lig4	98	78.256	ENSNBRG00000021252	lig4	99	78.256	Neolamprologus_brichardi
ENSPKIG00000011645	lig4	98	66.520	ENSNLEG00000007888	LIG4	99	66.520	Nomascus_leucogenys
ENSPKIG00000011645	lig4	98	64.874	ENSOPRG00000005765	LIG4	99	64.874	Ochotona_princeps
ENSPKIG00000011645	lig4	98	64.835	ENSODEG00000019683	LIG4	99	64.835	Octodon_degus
ENSPKIG00000011645	lig4	99	78.266	ENSONIG00000011969	lig4	99	78.266	Oreochromis_niloticus
ENSPKIG00000011645	lig4	98	65.604	ENSOCUG00000015734	LIG4	99	65.604	Oryctolagus_cuniculus
ENSPKIG00000011645	lig4	99	75.356	ENSORLG00000004041	lig4	100	75.575	Oryzias_latipes
ENSPKIG00000011645	lig4	99	75.465	ENSORLG00020019607	lig4	100	75.685	Oryzias_latipes_hni
ENSPKIG00000011645	lig4	99	75.356	ENSORLG00015017754	lig4	100	75.575	Oryzias_latipes_hsok
ENSPKIG00000011645	lig4	75	78.986	ENSOMEG00000003459	lig4	100	78.986	Oryzias_melastigma
ENSPKIG00000011645	lig4	98	65.971	ENSOGAG00000032120	LIG4	99	65.971	Otolemur_garnettii
ENSPKIG00000011645	lig4	81	68.708	ENSOARG00000005590	LIG4	99	68.708	Ovis_aries
ENSPKIG00000011645	lig4	98	66.740	ENSPPAG00000032998	LIG4	99	66.740	Pan_paniscus
ENSPKIG00000011645	lig4	98	66.081	ENSPPRG00000017804	LIG4	99	66.081	Panthera_pardus
ENSPKIG00000011645	lig4	98	65.971	ENSPTIG00000010051	LIG4	99	65.971	Panthera_tigris_altaica
ENSPKIG00000011645	lig4	98	66.850	ENSPTRG00000006025	LIG4	99	66.850	Pan_troglodytes
ENSPKIG00000011645	lig4	98	66.593	ENSPANG00000007562	LIG4	99	66.593	Papio_anubis
ENSPKIG00000011645	lig4	98	69.604	ENSPSIG00000001504	LIG4	99	69.604	Pelodiscus_sinensis
ENSPKIG00000011645	lig4	97	73.908	ENSPMGG00000013486	lig4	99	73.591	Periophthalmus_magnuspinnatus
ENSPKIG00000011645	lig4	98	65.022	ENSPEMG00000000076	Lig4	99	65.022	Peromyscus_maniculatus_bairdii
ENSPKIG00000011645	lig4	98	66.484	ENSPCIG00000021882	LIG4	99	66.484	Phascolarctos_cinereus
ENSPKIG00000011645	lig4	97	79.083	ENSPFOG00000000797	lig4	99	78.587	Poecilia_formosa
ENSPKIG00000011645	lig4	97	78.971	ENSPLAG00000001196	lig4	99	78.477	Poecilia_latipinna
ENSPKIG00000011645	lig4	97	79.195	ENSPMEG00000021353	lig4	99	78.808	Poecilia_mexicana
ENSPKIG00000011645	lig4	97	78.523	ENSPREG00000007323	lig4	99	78.146	Poecilia_reticulata
ENSPKIG00000011645	lig4	98	66.191	ENSPPYG00000005540	LIG4	99	66.191	Pongo_abelii
ENSPKIG00000011645	lig4	98	65.385	ENSPVAG00000016403	LIG4	99	65.385	Pteropus_vampyrus
ENSPKIG00000011645	lig4	99	77.936	ENSPNYG00000009660	lig4	100	77.936	Pundamilia_nyererei
ENSPKIG00000011645	lig4	98	78.936	ENSPNAG00000028056	lig4	99	78.936	Pygocentrus_nattereri
ENSPKIG00000011645	lig4	98	78.936	ENSPNAG00000028069	LIG4	99	78.936	Pygocentrus_nattereri
ENSPKIG00000011645	lig4	98	65.237	ENSRNOG00000014605	Lig4	99	65.237	Rattus_norvegicus
ENSPKIG00000011645	lig4	98	65.165	ENSRBIG00000039962	LIG4	99	65.165	Rhinopithecus_bieti
ENSPKIG00000011645	lig4	98	66.044	ENSRROG00000006040	LIG4	99	66.044	Rhinopithecus_roxellana
ENSPKIG00000011645	lig4	98	66.191	ENSSBOG00000019029	LIG4	99	66.191	Saimiri_boliviensis_boliviensis
ENSPKIG00000011645	lig4	98	63.916	ENSSHAG00000009525	LIG4	99	64.286	Sarcophilus_harrisii
ENSPKIG00000011645	lig4	99	83.938	ENSSFOG00015012835	lig4	100	83.938	Scleropages_formosus
ENSPKIG00000011645	lig4	99	75.688	ENSSMAG00000011267	lig4	100	75.688	Scophthalmus_maximus
ENSPKIG00000011645	lig4	99	77.133	ENSSDUG00000010343	lig4	100	77.133	Seriola_dumerili
ENSPKIG00000011645	lig4	99	75.492	ENSSLDG00000003239	lig4	100	75.602	Seriola_lalandi_dorsalis
ENSPKIG00000011645	lig4	97	66.004	ENSSARG00000006573	LIG4	99	66.004	Sorex_araneus
ENSPKIG00000011645	lig4	91	69.524	ENSSPUG00000002444	LIG4	100	69.524	Sphenodon_punctatus
ENSPKIG00000011645	lig4	99	77.692	ENSSPAG00000001609	lig4	100	77.692	Stegastes_partitus
ENSPKIG00000011645	lig4	98	66.117	ENSSSCG00000009540	LIG4	99	66.117	Sus_scrofa
ENSPKIG00000011645	lig4	98	67.592	ENSTGUG00000010795	LIG4	99	67.592	Taeniopygia_guttata
ENSPKIG00000011645	lig4	99	76.593	ENSTRUG00000009984	lig4	100	76.593	Takifugu_rubripes
ENSPKIG00000011645	lig4	98	76.322	ENSTNIG00000010348	lig4	99	76.542	Tetraodon_nigroviridis
ENSPKIG00000011645	lig4	98	66.740	ENSTBEG00000017741	LIG4	99	66.740	Tupaia_belangeri
ENSPKIG00000011645	lig4	98	65.752	ENSTTRG00000012660	LIG4	99	65.752	Tursiops_truncatus
ENSPKIG00000011645	lig4	98	65.714	ENSUAMG00000003773	LIG4	99	65.714	Ursus_americanus
ENSPKIG00000011645	lig4	99	67.105	ENSXETG00000002654	lig4	100	67.105	Xenopus_tropicalis
ENSPKIG00000011645	lig4	97	78.635	ENSXCOG00000017401	lig4	99	78.035	Xiphophorus_couchianus
ENSPKIG00000011645	lig4	97	79.083	ENSXMAG00000015142	lig4	99	78.477	Xiphophorus_maculatus