EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000012029 (Gene tree)
Gene ID: 111853356
Gene Symbol: rbfox1l
Alias: -
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 12129 bases
Position: chrPGUA01000253.1:585622-597750
Accession: 111853356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000031644	Fox-1_C	PF12414.8	3.8e-34	1	1
ENSPKIP00000031672	Fox-1_C	PF12414.8	3.7e-24	1	1
ENSPKIP00000031644	RRM_1	PF00076.22	1.1e-17	1	1
ENSPKIP00000031672	RRM_1	PF00076.22	1.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000012522	-	1155	-	ENSPKIP00000031672	384 (aa)	-	-
ENSPKIT00000012495	-	3594	-	ENSPKIP00000031644	380 (aa)	XP_023685911	UPI000CD66F7E

Gene Model

Click here to download ENSPKIG00000012029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000012029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000012029	rbfox1l	60	71.053	ENSPKIG00000009667	-	63	69.528
ENSPKIG00000012029	rbfox1l	68	54.196	ENSPKIG00000006854	-	58	54.851
ENSPKIG00000012029	rbfox1l	61	55.466	ENSPKIG00000019353	rbfox1	69	60.280
ENSPKIG00000012029	rbfox1l	63	55.109	ENSPKIG00000010816	-	74	55.882
ENSPKIG00000012029	rbfox1l	80	64.078	ENSPKIG00000010299	rbfox3a	75	61.049
ENSPKIG00000012029	rbfox1l	63	69.328	ENSPKIG00000022633	-	66	68.067

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000012029	rbfox1l	97	84.677	ENSAPOG00000016304	rbfox1l	98	85.484	Acanthochromis_polyacanthus
ENSPKIG00000012029	rbfox1l	100	81.842	ENSACIG00000006441	rbfox1l	100	81.842	Amphilophus_citrinellus
ENSPKIG00000012029	rbfox1l	88	80.702	ENSAOCG00000020938	rbfox1l	94	80.878	Amphiprion_ocellaris
ENSPKIG00000012029	rbfox1l	100	85.417	ENSAPEG00000008232	rbfox1l	100	86.198	Amphiprion_percula
ENSPKIG00000012029	rbfox1l	100	86.053	ENSATEG00000022649	rbfox1l	100	86.053	Anabas_testudineus
ENSPKIG00000012029	rbfox1l	64	73.600	ENSACAG00000011931	-	91	73.600	Anolis_carolinensis
ENSPKIG00000012029	rbfox1l	100	86.458	ENSACLG00000021394	rbfox1l	100	86.458	Astatotilapia_calliptera
ENSPKIG00000012029	rbfox1l	100	90.838	ENSAMXG00000010470	rbfox1l	100	90.314	Astyanax_mexicanus
ENSPKIG00000012029	rbfox1l	100	55.128	ENSCPBG00000010944	-	100	57.653	Chrysemys_picta_bellii
ENSPKIG00000012029	rbfox1l	100	86.614	ENSCSEG00000018898	rbfox1l	100	87.139	Cynoglossus_semilaevis
ENSPKIG00000012029	rbfox1l	100	85.156	ENSCVAG00000007986	rbfox1l	100	84.635	Cyprinodon_variegatus
ENSPKIG00000012029	rbfox1l	100	89.005	ENSDARG00000021184	rbfox1l	100	88.743	Danio_rerio
ENSPKIG00000012029	rbfox1l	100	84.224	ENSELUG00000015077	rbfox1l	100	84.224	Esox_lucius
ENSPKIG00000012029	rbfox1l	96	79.151	ENSFHEG00000016557	rbfox1l	95	90.244	Fundulus_heteroclitus
ENSPKIG00000012029	rbfox1l	100	85.156	ENSGMOG00000005040	rbfox1l	100	85.156	Gadus_morhua
ENSPKIG00000012029	rbfox1l	92	84.507	ENSGAFG00000013211	rbfox1l	97	84.507	Gambusia_affinis
ENSPKIG00000012029	rbfox1l	100	86.979	ENSGACG00000010757	rbfox1l	100	86.719	Gasterosteus_aculeatus
ENSPKIG00000012029	rbfox1l	65	70.916	ENSGAGG00000012440	-	86	73.387	Gopherus_agassizii
ENSPKIG00000012029	rbfox1l	100	86.458	ENSHBUG00000013406	rbfox1l	100	86.458	Haplochromis_burtoni
ENSPKIG00000012029	rbfox1l	100	83.896	ENSHCOG00000020771	rbfox1l	100	84.156	Hippocampus_comes
ENSPKIG00000012029	rbfox1l	99	84.392	ENSIPUG00000000065	rbfox1l	99	84.463	Ictalurus_punctatus
ENSPKIG00000012029	rbfox1l	100	85.974	ENSKMAG00000005146	rbfox1l	100	85.714	Kryptolebias_marmoratus
ENSPKIG00000012029	rbfox1l	100	86.458	ENSLBEG00000017089	rbfox1l	100	88.281	Labrus_bergylta
ENSPKIG00000012029	rbfox1l	100	85.938	ENSMAMG00000019480	rbfox1l	100	87.240	Mastacembelus_armatus
ENSPKIG00000012029	rbfox1l	100	86.458	ENSMZEG00005016374	rbfox1l	100	86.458	Maylandia_zebra
ENSPKIG00000012029	rbfox1l	100	86.579	ENSMMOG00000016530	rbfox1l	100	86.579	Mola_mola
ENSPKIG00000012029	rbfox1l	100	85.000	ENSMALG00000009384	rbfox1l	100	85.526	Monopterus_albus
ENSPKIG00000012029	rbfox1l	100	87.927	ENSNBRG00000003346	rbfox1l	100	87.927	Neolamprologus_brichardi
ENSPKIG00000012029	rbfox1l	100	86.979	ENSONIG00000012754	rbfox1l	100	86.979	Oreochromis_niloticus
ENSPKIG00000012029	rbfox1l	100	84.635	ENSORLG00000011269	rbfox1l	100	85.156	Oryzias_latipes
ENSPKIG00000012029	rbfox1l	100	85.417	ENSORLG00020000162	rbfox1l	100	85.938	Oryzias_latipes_hni
ENSPKIG00000012029	rbfox1l	100	84.896	ENSORLG00015013464	rbfox1l	100	85.417	Oryzias_latipes_hsok
ENSPKIG00000012029	rbfox1l	100	84.896	ENSOMEG00000010584	rbfox1l	100	87.500	Oryzias_melastigma
ENSPKIG00000012029	rbfox1l	100	80.000	ENSPMGG00000012082	rbfox1l	100	78.947	Periophthalmus_magnuspinnatus
ENSPKIG00000012029	rbfox1l	100	86.198	ENSPFOG00000009338	rbfox1l	100	86.198	Poecilia_formosa
ENSPKIG00000012029	rbfox1l	85	77.134	ENSPLAG00000012816	rbfox1l	99	77.134	Poecilia_latipinna
ENSPKIG00000012029	rbfox1l	100	81.771	ENSPMEG00000017597	rbfox1l	100	80.990	Poecilia_mexicana
ENSPKIG00000012029	rbfox1l	100	82.031	ENSPREG00000007940	rbfox1l	100	81.250	Poecilia_reticulata
ENSPKIG00000012029	rbfox1l	100	86.198	ENSPNYG00000002098	rbfox1l	100	86.198	Pundamilia_nyererei
ENSPKIG00000012029	rbfox1l	100	87.467	ENSPNAG00000001620	rbfox1l	100	88.251	Pygocentrus_nattereri
ENSPKIG00000012029	rbfox1l	100	90.026	ENSSFOG00015000675	rbfox1l	100	90.289	Scleropages_formosus
ENSPKIG00000012029	rbfox1l	100	85.938	ENSSMAG00000013090	rbfox1l	100	86.458	Scophthalmus_maximus
ENSPKIG00000012029	rbfox1l	100	84.935	ENSSDUG00000008705	rbfox1l	100	87.047	Seriola_dumerili
ENSPKIG00000012029	rbfox1l	100	84.935	ENSSLDG00000022256	rbfox1l	100	87.047	Seriola_lalandi_dorsalis
ENSPKIG00000012029	rbfox1l	100	85.417	ENSSPAG00000016620	rbfox1l	100	85.938	Stegastes_partitus
ENSPKIG00000012029	rbfox1l	96	82.016	ENSTRUG00000015905	rbfox1l	100	83.379	Takifugu_rubripes
ENSPKIG00000012029	rbfox1l	64	81.579	ENSTNIG00000008088	rbfox1l	99	83.774	Tetraodon_nigroviridis
ENSPKIG00000012029	rbfox1l	100	84.375	ENSXMAG00000023471	rbfox1l	100	85.677	Xiphophorus_maculatus