EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000012609 (Gene tree)
Gene ID: 111839756
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 66256 bases
Position: chrPGUA01000001.1:7174752-7241007
Accession: 111839756
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000032634	CMS1	PF14617.6	4.1e-34	1	1
ENSPKIP00000032588	CMS1	PF14617.6	4.9e-34	1	1
ENSPKIP00000032614	CMS1	PF14617.6	5e-34	1	1
ENSPKIP00000032565	CMS1	PF14617.6	5.8e-34	1	1
ENSPKIP00000032552	CMS1	PF14617.6	1.1e-32	1	1
ENSPKIP00000032552	DEAD	PF00270.29	1.3e-05	1	1
ENSPKIP00000032634	DEAD	PF00270.29	1.3e-05	1	1
ENSPKIP00000032588	DEAD	PF00270.29	1.4e-05	1	1
ENSPKIP00000032614	DEAD	PF00270.29	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000013484	-	3194	-	ENSPKIP00000032614	287 (aa)	-	-
ENSPKIT00000013504	-	3146	-	ENSPKIP00000032634	271 (aa)	-	-
ENSPKIT00000013421	-	3453	-	ENSPKIP00000032552	267 (aa)	-	-
ENSPKIT00000013435	-	3233	-	ENSPKIP00000032565	300 (aa)	XP_023659856	UPI000CD63387
ENSPKIT00000013458	-	3307	-	ENSPKIP00000032588	286 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000012609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000012609's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000012609	cmss1	100	54.982	ENSG00000184220	CMSS1	98	67.500	Homo_sapiens
ENSPKIG00000012609	cmss1	82	65.812	ENSAPOG00000010604	cmss1	100	62.222	Acanthochromis_polyacanthus
ENSPKIG00000012609	cmss1	98	56.391	ENSAMEG00000004092	CMSS1	88	61.039	Ailuropoda_melanoleuca
ENSPKIG00000012609	cmss1	75	61.084	ENSACIG00000021854	cmss1	99	54.373	Amphilophus_citrinellus
ENSPKIG00000012609	cmss1	97	62.121	ENSAOCG00000013361	cmss1	98	60.839	Amphiprion_ocellaris
ENSPKIG00000012609	cmss1	97	61.132	ENSAPEG00000005829	cmss1	98	61.324	Amphiprion_percula
ENSPKIG00000012609	cmss1	97	63.019	ENSATEG00000008209	cmss1	96	64.158	Anabas_testudineus
ENSPKIG00000012609	cmss1	85	63.043	ENSAPLG00000010542	CMSS1	99	63.793	Anas_platyrhynchos
ENSPKIG00000012609	cmss1	95	60.232	ENSACAG00000011065	CMSS1	94	58.755	Anolis_carolinensis
ENSPKIG00000012609	cmss1	97	55.212	ENSANAG00000023565	CMSS1	86	60.000	Aotus_nancymaae
ENSPKIG00000012609	cmss1	97	60.595	ENSACLG00000027294	cmss1	96	60.357	Astatotilapia_calliptera
ENSPKIG00000012609	cmss1	97	58.736	ENSAMXG00000002046	cmss1	93	59.191	Astyanax_mexicanus
ENSPKIG00000012609	cmss1	97	56.371	ENSBTAG00000013663	CMSS1	91	56.604	Bos_taurus
ENSPKIG00000012609	cmss1	97	57.143	ENSCJAG00000000610	CMSS1	91	56.923	Callithrix_jacchus
ENSPKIG00000012609	cmss1	88	60.084	ENSCAFG00000009230	CMSS1	82	60.870	Canis_familiaris
ENSPKIG00000012609	cmss1	99	55.556	ENSCAFG00020009464	-	89	55.253	Canis_lupus_dingo
ENSPKIG00000012609	cmss1	75	61.881	ENSCAFG00020024156	-	63	61.881	Canis_lupus_dingo
ENSPKIG00000012609	cmss1	100	54.613	ENSCHIG00000013003	CMSS1	82	60.870	Capra_hircus
ENSPKIG00000012609	cmss1	88	59.833	ENSTSYG00000009266	CMSS1	87	60.435	Carlito_syrichta
ENSPKIG00000012609	cmss1	69	56.989	ENSCAPG00000013584	CMSS1	87	56.989	Cavia_aperea
ENSPKIG00000012609	cmss1	97	57.736	ENSCPOG00000014680	CMSS1	91	56.506	Cavia_porcellus
ENSPKIG00000012609	cmss1	97	55.725	ENSCCAG00000034685	CMSS1	86	60.435	Cebus_capucinus
ENSPKIG00000012609	cmss1	97	56.439	ENSCATG00000031980	CMSS1	91	56.226	Cercocebus_atys
ENSPKIG00000012609	cmss1	85	61.039	ENSCLAG00000011241	CMSS1	97	60.870	Chinchilla_lanigera
ENSPKIG00000012609	cmss1	86	59.829	ENSCSAG00000006024	CMSS1	92	60.000	Chlorocebus_sabaeus
ENSPKIG00000012609	cmss1	97	40.927	ENSCHOG00000012098	CMSS1	92	41.199	Choloepus_hoffmanni
ENSPKIG00000012609	cmss1	68	40.642	ENSCING00000014848	-	99	40.642	Ciona_intestinalis
ENSPKIG00000012609	cmss1	97	56.439	ENSCANG00000031337	CMSS1	94	55.515	Colobus_angolensis_palliatus
ENSPKIG00000012609	cmss1	97	55.212	ENSCGRG00001014305	Cmss1	91	54.615	Cricetulus_griseus_chok1gshd
ENSPKIG00000012609	cmss1	88	57.983	ENSCGRG00000006722	Cmss1	88	59.130	Cricetulus_griseus_crigri
ENSPKIG00000012609	cmss1	96	61.742	ENSCSEG00000004958	cmss1	95	59.712	Cynoglossus_semilaevis
ENSPKIG00000012609	cmss1	97	57.736	ENSCVAG00000005039	cmss1	97	58.423	Cyprinodon_variegatus
ENSPKIG00000012609	cmss1	97	58.052	ENSDARG00000112579	cmss1	93	58.303	Danio_rerio
ENSPKIG00000012609	cmss1	88	60.084	ENSDNOG00000040418	CMSS1	82	60.870	Dasypus_novemcinctus
ENSPKIG00000012609	cmss1	97	56.757	ENSDORG00000010461	Cmss1	91	56.716	Dipodomys_ordii
ENSPKIG00000012609	cmss1	85	60.606	ENSEASG00005010966	CMSS1	92	63.861	Equus_asinus_asinus
ENSPKIG00000012609	cmss1	95	53.480	ENSECAG00000015662	CMSS1	99	59.565	Equus_caballus
ENSPKIG00000012609	cmss1	97	38.224	ENSEEUG00000007624	-	91	38.224	Erinaceus_europaeus
ENSPKIG00000012609	cmss1	96	63.740	ENSELUG00000019459	cmss1	91	62.319	Esox_lucius
ENSPKIG00000012609	cmss1	97	58.333	ENSFCAG00000044577	CMSS1	91	57.358	Felis_catus
ENSPKIG00000012609	cmss1	85	63.793	ENSFALG00000005816	CMSS1	95	63.793	Ficedula_albicollis
ENSPKIG00000012609	cmss1	85	61.905	ENSFDAG00000012577	CMSS1	99	61.739	Fukomys_damarensis
ENSPKIG00000012609	cmss1	86	65.086	ENSFHEG00000012008	cmss1	95	65.217	Fundulus_heteroclitus
ENSPKIG00000012609	cmss1	92	66.800	ENSGMOG00000016729	cmss1	97	60.949	Gadus_morhua
ENSPKIG00000012609	cmss1	99	60.595	ENSGALG00000015267	CMSS1	100	60.595	Gallus_gallus
ENSPKIG00000012609	cmss1	76	70.048	ENSGAFG00000021217	cmss1	77	69.458	Gambusia_affinis
ENSPKIG00000012609	cmss1	99	59.041	ENSGACG00000002798	cmss1	97	60.507	Gasterosteus_aculeatus
ENSPKIG00000012609	cmss1	99	56.618	ENSGAGG00000019861	CMSS1	99	53.623	Gopherus_agassizii
ENSPKIG00000012609	cmss1	86	60.684	ENSGGOG00000014125	CMSS1	87	60.870	Gorilla_gorilla
ENSPKIG00000012609	cmss1	97	59.696	ENSHBUG00000008431	cmss1	99	58.803	Haplochromis_burtoni
ENSPKIG00000012609	cmss1	85	62.338	ENSHGLG00000019481	CMSS1	92	62.174	Heterocephalus_glaber_female
ENSPKIG00000012609	cmss1	85	62.338	ENSHGLG00100010314	CMSS1	91	62.174	Heterocephalus_glaber_male
ENSPKIG00000012609	cmss1	97	57.664	ENSHCOG00000003222	cmss1	96	57.931	Hippocampus_comes
ENSPKIG00000012609	cmss1	97	62.406	ENSIPUG00000011591	cmss1	93	63.469	Ictalurus_punctatus
ENSPKIG00000012609	cmss1	97	56.061	ENSSTOG00000019366	CMSS1	94	54.015	Ictidomys_tridecemlineatus
ENSPKIG00000012609	cmss1	99	55.970	ENSJJAG00000014894	Cmss1	90	63.861	Jaculus_jaculus
ENSPKIG00000012609	cmss1	98	54.340	ENSKMAG00000002390	cmss1	82	61.576	Kryptolebias_marmoratus
ENSPKIG00000012609	cmss1	98	59.398	ENSLBEG00000006298	cmss1	100	59.398	Labrus_bergylta
ENSPKIG00000012609	cmss1	85	62.174	ENSLACG00000009293	CMSS1	99	62.609	Latimeria_chalumnae
ENSPKIG00000012609	cmss1	98	62.172	ENSLOCG00000009391	cmss1	93	60.741	Lepisosteus_oculatus
ENSPKIG00000012609	cmss1	85	60.173	ENSLAFG00000017509	CMSS1	99	60.000	Loxodonta_africana
ENSPKIG00000012609	cmss1	97	56.818	ENSMFAG00000045006	CMSS1	94	55.882	Macaca_fascicularis
ENSPKIG00000012609	cmss1	97	56.439	ENSMMUG00000002939	CMSS1	96	60.455	Macaca_mulatta
ENSPKIG00000012609	cmss1	97	56.818	ENSMNEG00000031315	CMSS1	94	55.882	Macaca_nemestrina
ENSPKIG00000012609	cmss1	97	56.818	ENSMLEG00000033660	CMSS1	94	55.882	Mandrillus_leucophaeus
ENSPKIG00000012609	cmss1	97	62.362	ENSMAMG00000017176	cmss1	96	61.290	Mastacembelus_armatus
ENSPKIG00000012609	cmss1	97	60.595	ENSMZEG00005021886	cmss1	96	60.357	Maylandia_zebra
ENSPKIG00000012609	cmss1	85	64.783	ENSMGAG00000014360	CMSS1	99	64.783	Meleagris_gallopavo
ENSPKIG00000012609	cmss1	97	39.773	ENSMAUG00000020609	Cmss1	89	37.643	Mesocricetus_auratus
ENSPKIG00000012609	cmss1	97	57.692	ENSMICG00000048977	CMSS1	91	57.471	Microcebus_murinus
ENSPKIG00000012609	cmss1	97	56.274	ENSMOCG00000021937	Cmss1	95	55.636	Microtus_ochrogaster
ENSPKIG00000012609	cmss1	75	68.966	ENSMMOG00000019794	cmss1	84	68.966	Mola_mola
ENSPKIG00000012609	cmss1	98	58.672	ENSMODG00000002275	CMSS1	85	63.913	Monodelphis_domestica
ENSPKIG00000012609	cmss1	96	65.779	ENSMALG00000004250	cmss1	96	64.184	Monopterus_albus
ENSPKIG00000012609	cmss1	97	58.175	MGP_CAROLIEiJ_G0020824	Cmss1	95	56.364	Mus_caroli
ENSPKIG00000012609	cmss1	97	57.795	ENSMUSG00000022748	Cmss1	95	56.000	Mus_musculus
ENSPKIG00000012609	cmss1	97	56.757	MGP_PahariEiJ_G0016524	Cmss1	91	56.538	Mus_pahari
ENSPKIG00000012609	cmss1	97	57.143	MGP_SPRETEiJ_G0021724	Cmss1	91	56.923	Mus_spretus
ENSPKIG00000012609	cmss1	88	60.504	ENSMPUG00000011324	CMSS1	87	61.135	Mustela_putorius_furo
ENSPKIG00000012609	cmss1	94	55.159	ENSMLUG00000001131	CMSS1	87	60.776	Myotis_lucifugus
ENSPKIG00000012609	cmss1	99	55.056	ENSNGAG00000020316	Cmss1	95	53.818	Nannospalax_galili
ENSPKIG00000012609	cmss1	97	60.150	ENSNBRG00000003095	cmss1	96	60.498	Neolamprologus_brichardi
ENSPKIG00000012609	cmss1	97	56.818	ENSNLEG00000034172	CMSS1	94	56.250	Nomascus_leucogenys
ENSPKIG00000012609	cmss1	85	56.277	ENSMEUG00000014505	CMSS1	99	56.957	Notamacropus_eugenii
ENSPKIG00000012609	cmss1	97	57.308	ENSOPRG00000002986	CMSS1	91	57.088	Ochotona_princeps
ENSPKIG00000012609	cmss1	97	56.604	ENSODEG00000005226	-	91	56.391	Octodon_degus
ENSPKIG00000012609	cmss1	97	47.104	ENSODEG00000009446	-	87	53.363	Octodon_degus
ENSPKIG00000012609	cmss1	97	56.757	ENSODEG00000003558	-	91	56.538	Octodon_degus
ENSPKIG00000012609	cmss1	97	51.331	ENSODEG00000001853	-	98	48.227	Octodon_degus
ENSPKIG00000012609	cmss1	82	66.368	ENSONIG00000006678	cmss1	85	66.368	Oreochromis_niloticus
ENSPKIG00000012609	cmss1	86	63.404	ENSOANG00000007529	CMSS1	99	62.174	Ornithorhynchus_anatinus
ENSPKIG00000012609	cmss1	95	57.588	ENSOCUG00000025366	CMSS1	82	61.304	Oryctolagus_cuniculus
ENSPKIG00000012609	cmss1	96	62.308	ENSORLG00000020340	cmss1	96	60.507	Oryzias_latipes
ENSPKIG00000012609	cmss1	77	61.058	ENSORLG00020012235	cmss1	99	52.075	Oryzias_latipes_hni
ENSPKIG00000012609	cmss1	97	54.647	ENSORLG00015015551	cmss1	76	61.084	Oryzias_latipes_hsok
ENSPKIG00000012609	cmss1	97	60.674	ENSOMEG00000012555	cmss1	97	60.211	Oryzias_melastigma
ENSPKIG00000012609	cmss1	85	61.039	ENSOGAG00000002045	CMSS1	99	60.870	Otolemur_garnettii
ENSPKIG00000012609	cmss1	99	55.019	ENSOARG00000017899	CMSS1	92	53.137	Ovis_aries
ENSPKIG00000012609	cmss1	100	55.351	ENSPPAG00000038515	CMSS1	94	55.351	Pan_paniscus
ENSPKIG00000012609	cmss1	97	57.576	ENSPPRG00000016767	CMSS1	91	56.604	Panthera_pardus
ENSPKIG00000012609	cmss1	97	57.576	ENSPTIG00000018274	CMSS1	95	56.159	Panthera_tigris_altaica
ENSPKIG00000012609	cmss1	100	55.351	ENSPTRG00000015157	CMSS1	92	60.870	Pan_troglodytes
ENSPKIG00000012609	cmss1	85	60.173	ENSPANG00000019980	CMSS1	90	60.000	Papio_anubis
ENSPKIG00000012609	cmss1	75	67.327	ENSPSIG00000003849	CMSS1	99	61.304	Pelodiscus_sinensis
ENSPKIG00000012609	cmss1	75	72.549	ENSPMGG00000010286	cmss1	88	72.549	Periophthalmus_magnuspinnatus
ENSPKIG00000012609	cmss1	99	53.358	ENSPEMG00000016384	Cmss1	95	53.791	Peromyscus_maniculatus_bairdii
ENSPKIG00000012609	cmss1	75	54.902	ENSPMAG00000001146	cmss1	99	55.172	Petromyzon_marinus
ENSPKIG00000012609	cmss1	92	61.044	ENSPCIG00000015656	CMSS1	86	63.043	Phascolarctos_cinereus
ENSPKIG00000012609	cmss1	96	62.738	ENSPFOG00000016849	cmss1	95	61.624	Poecilia_formosa
ENSPKIG00000012609	cmss1	96	62.357	ENSPLAG00000008323	cmss1	95	61.255	Poecilia_latipinna
ENSPKIG00000012609	cmss1	96	62.357	ENSPMEG00000021020	cmss1	96	61.232	Poecilia_mexicana
ENSPKIG00000012609	cmss1	96	63.774	ENSPREG00000007618	cmss1	93	61.029	Poecilia_reticulata
ENSPKIG00000012609	cmss1	97	57.576	ENSPPYG00000013606	CMSS1	91	57.358	Pongo_abelii
ENSPKIG00000012609	cmss1	97	57.692	ENSPCOG00000020035	CMSS1	87	61.739	Propithecus_coquereli
ENSPKIG00000012609	cmss1	85	54.936	ENSPVAG00000017031	CMSS1	80	55.794	Pteropus_vampyrus
ENSPKIG00000012609	cmss1	97	61.423	ENSPNYG00000013428	cmss1	97	61.132	Pundamilia_nyererei
ENSPKIG00000012609	cmss1	99	59.341	ENSPNAG00000007912	cmss1	93	58.242	Pygocentrus_nattereri
ENSPKIG00000012609	cmss1	90	57.613	ENSRNOG00000027888	Cmss1	88	60.000	Rattus_norvegicus
ENSPKIG00000012609	cmss1	97	55.682	ENSRBIG00000037931	CMSS1	94	54.779	Rhinopithecus_bieti
ENSPKIG00000012609	cmss1	97	55.682	ENSRROG00000042910	CMSS1	94	54.779	Rhinopithecus_roxellana
ENSPKIG00000012609	cmss1	88	59.244	ENSSBOG00000030980	CMSS1	86	60.000	Saimiri_boliviensis_boliviensis
ENSPKIG00000012609	cmss1	75	68.317	ENSSHAG00000009321	CMSS1	89	64.348	Sarcophilus_harrisii
ENSPKIG00000012609	cmss1	94	74.118	ENSSFOG00015001509	cmss1	99	70.000	Scleropages_formosus
ENSPKIG00000012609	cmss1	94	63.707	ENSSMAG00000001653	cmss1	96	61.071	Scophthalmus_maximus
ENSPKIG00000012609	cmss1	96	66.540	ENSSDUG00000007719	cmss1	96	65.530	Seriola_dumerili
ENSPKIG00000012609	cmss1	96	62.963	ENSSLDG00000012300	cmss1	98	60.959	Seriola_lalandi_dorsalis
ENSPKIG00000012609	cmss1	91	47.794	ENSSARG00000003584	CMSS1	80	52.863	Sorex_araneus
ENSPKIG00000012609	cmss1	85	64.348	ENSSPUG00000003865	CMSS1	100	64.783	Sphenodon_punctatus
ENSPKIG00000012609	cmss1	100	64.000	ENSSPAG00000019182	cmss1	84	60.638	Stegastes_partitus
ENSPKIG00000012609	cmss1	97	56.371	ENSSSCG00000011970	CMSS1	91	55.849	Sus_scrofa
ENSPKIG00000012609	cmss1	85	61.739	ENSTGUG00000013635	CMSS1	99	61.739	Taeniopygia_guttata
ENSPKIG00000012609	cmss1	99	58.364	ENSTRUG00000015265	cmss1	96	57.721	Takifugu_rubripes
ENSPKIG00000012609	cmss1	75	63.547	ENSTNIG00000002880	cmss1	97	54.982	Tetraodon_nigroviridis
ENSPKIG00000012609	cmss1	97	37.838	ENSTBEG00000016722	CMSS1	91	37.692	Tupaia_belangeri
ENSPKIG00000012609	cmss1	97	56.371	ENSTTRG00000001562	CMSS1	91	56.154	Tursiops_truncatus
ENSPKIG00000012609	cmss1	96	57.143	ENSUAMG00000024209	CMSS1	91	64.851	Ursus_americanus
ENSPKIG00000012609	cmss1	100	55.720	ENSUMAG00000001983	CMSS1	94	56.364	Ursus_maritimus
ENSPKIG00000012609	cmss1	59	64.375	ENSVPAG00000000263	CMSS1	57	64.375	Vicugna_pacos
ENSPKIG00000012609	cmss1	88	60.504	ENSVVUG00000021647	-	92	61.304	Vulpes_vulpes
ENSPKIG00000012609	cmss1	75	63.366	ENSVVUG00000007776	-	80	63.366	Vulpes_vulpes
ENSPKIG00000012609	cmss1	99	53.788	ENSXETG00000011858	cmss1	95	53.521	Xenopus_tropicalis
ENSPKIG00000012609	cmss1	99	61.029	ENSXCOG00000018724	cmss1	93	61.255	Xiphophorus_couchianus
ENSPKIG00000012609	cmss1	97	61.132	ENSXMAG00000011243	cmss1	99	61.132	Xiphophorus_maculatus