EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000013411 (Gene tree)
Gene ID: 111855288
Gene Symbol: smarca1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 21824 bases
Position: chrPGUA01000030.1:2260810-2282633
Accession: ZDB-GENE-070705-296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000033988	ResIII	PF04851.15	5.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000014986	-	2952	-	ENSPKIP00000034087	983 (aa)	-	-
ENSPKIT00000014886	-	2913	-	ENSPKIP00000033988	970 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000013411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000013411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000013411	smarca1	96	83.070	ENSPKIG00000015699	SMARCA5	96	82.871
ENSPKIG00000013411	smarca1	96	84.543	ENSPKIG00000015885	SMARCA5	98	84.543
ENSPKIG00000013411	smarca1	57	36.970	ENSPKIG00000010890	hells	76	39.167
ENSPKIG00000013411	smarca1	54	42.805	ENSPKIG00000022166	chd1l	63	42.805

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000013411	smarca1	98	87.124	ENSG00000102038	SMARCA1	93	85.816	Homo_sapiens
ENSPKIG00000013411	smarca1	96	83.912	ENSAPOG00000016035	smarca5	96	84.040	Acanthochromis_polyacanthus
ENSPKIG00000013411	smarca1	98	85.656	ENSAMEG00000015218	SMARCA1	89	85.819	Ailuropoda_melanoleuca
ENSPKIG00000013411	smarca1	89	84.050	ENSACIG00000016982	smarca5	97	84.151	Amphilophus_citrinellus
ENSPKIG00000013411	smarca1	96	83.912	ENSAOCG00000015578	smarca5	95	81.790	Amphiprion_ocellaris
ENSPKIG00000013411	smarca1	96	83.912	ENSAPEG00000011117	smarca5	97	84.318	Amphiprion_percula
ENSPKIG00000013411	smarca1	97	83.699	ENSATEG00000012894	smarca5	93	83.699	Anabas_testudineus
ENSPKIG00000013411	smarca1	94	90.782	ENSAPLG00000013149	SMARCA1	95	90.763	Anas_platyrhynchos
ENSPKIG00000013411	smarca1	97	88.912	ENSACAG00000011376	SMARCA1	92	88.912	Anolis_carolinensis
ENSPKIG00000013411	smarca1	98	81.828	ENSANAG00000023098	SMARCA1	89	81.924	Aotus_nancymaae
ENSPKIG00000013411	smarca1	99	81.231	ENSACLG00000025356	smarca5	95	81.351	Astatotilapia_calliptera
ENSPKIG00000013411	smarca1	99	82.533	ENSAMXG00000005709	smarca5	94	82.533	Astyanax_mexicanus
ENSPKIG00000013411	smarca1	93	92.694	ENSAMXG00000011227	smarca1	99	92.694	Astyanax_mexicanus
ENSPKIG00000013411	smarca1	98	86.722	ENSBTAG00000002292	SMARCA1	91	85.819	Bos_taurus
ENSPKIG00000013411	smarca1	99	62.918	WBGene00002169	isw-1	94	63.466	Caenorhabditis_elegans
ENSPKIG00000013411	smarca1	98	87.020	ENSCJAG00000002868	SMARCA1	89	87.209	Callithrix_jacchus
ENSPKIG00000013411	smarca1	98	76.860	ENSCAFG00000018673	SMARCA1	95	78.792	Canis_familiaris
ENSPKIG00000013411	smarca1	98	86.826	ENSCAFG00020001751	SMARCA1	89	87.012	Canis_lupus_dingo
ENSPKIG00000013411	smarca1	98	86.826	ENSCHIG00000009837	SMARCA1	93	85.525	Capra_hircus
ENSPKIG00000013411	smarca1	96	88.186	ENSTSYG00000004240	SMARCA1	95	87.933	Carlito_syrichta
ENSPKIG00000013411	smarca1	96	87.342	ENSCPOG00000013601	SMARCA1	93	84.913	Cavia_porcellus
ENSPKIG00000013411	smarca1	98	84.008	ENSCCAG00000030817	SMARCA1	89	84.249	Cebus_capucinus
ENSPKIG00000013411	smarca1	98	86.880	ENSCATG00000015921	SMARCA1	93	86.880	Cercocebus_atys
ENSPKIG00000013411	smarca1	98	86.203	ENSCLAG00000002171	SMARCA1	93	84.913	Chinchilla_lanigera
ENSPKIG00000013411	smarca1	98	87.124	ENSCSAG00000008460	SMARCA1	89	87.315	Chlorocebus_sabaeus
ENSPKIG00000013411	smarca1	94	90.675	ENSCPBG00000001146	SMARCA1	88	90.655	Chrysemys_picta_bellii
ENSPKIG00000013411	smarca1	95	75.000	ENSCING00000004110	swi/snf	92	75.322	Ciona_intestinalis
ENSPKIG00000013411	smarca1	99	72.635	ENSCSAVG00000004620	-	99	75.056	Ciona_savignyi
ENSPKIG00000013411	smarca1	98	87.227	ENSCANG00000007183	SMARCA1	89	87.421	Colobus_angolensis_palliatus
ENSPKIG00000013411	smarca1	98	86.203	ENSCGRG00001010776	Smarca1	93	84.913	Cricetulus_griseus_chok1gshd
ENSPKIG00000013411	smarca1	96	86.884	ENSCGRG00000015301	Smarca1	95	86.884	Cricetulus_griseus_crigri
ENSPKIG00000013411	smarca1	96	83.718	ENSCSEG00000000328	smarca5	95	81.092	Cynoglossus_semilaevis
ENSPKIG00000013411	smarca1	99	81.994	ENSCVAG00000008668	smarca5	97	84.096	Cyprinodon_variegatus
ENSPKIG00000013411	smarca1	99	81.716	ENSDARG00000052348	smarca5	94	81.716	Danio_rerio
ENSPKIG00000013411	smarca1	99	87.353	ENSDARG00000012776	smarca1	98	87.451	Danio_rerio
ENSPKIG00000013411	smarca1	98	86.364	ENSDNOG00000004315	SMARCA1	91	86.814	Dasypus_novemcinctus
ENSPKIG00000013411	smarca1	98	85.965	ENSDORG00000009270	Smarca1	93	85.965	Dipodomys_ordii
ENSPKIG00000013411	smarca1	99	72.764	FBgn0011604	Iswi	95	73.198	Drosophila_melanogaster
ENSPKIG00000013411	smarca1	83	80.273	ENSETEG00000017426	SMARCA1	85	80.273	Echinops_telfairi
ENSPKIG00000013411	smarca1	96	82.577	ENSEBUG00000001239	smarca5	93	82.577	Eptatretus_burgeri
ENSPKIG00000013411	smarca1	96	84.216	ENSEASG00005008218	SMARCA1	94	84.640	Equus_asinus_asinus
ENSPKIG00000013411	smarca1	98	86.722	ENSECAG00000012106	SMARCA1	89	86.906	Equus_caballus
ENSPKIG00000013411	smarca1	81	83.721	ENSEEUG00000014927	SMARCA1	82	83.721	Erinaceus_europaeus
ENSPKIG00000013411	smarca1	99	90.490	ENSELUG00000010515	smarca1	98	90.490	Esox_lucius
ENSPKIG00000013411	smarca1	98	86.618	ENSFCAG00000018496	SMARCA1	89	86.800	Felis_catus
ENSPKIG00000013411	smarca1	92	90.263	ENSFALG00000000209	SMARCA1	98	90.263	Ficedula_albicollis
ENSPKIG00000013411	smarca1	98	85.321	ENSFDAG00000009818	SMARCA1	96	85.321	Fukomys_damarensis
ENSPKIG00000013411	smarca1	99	81.994	ENSFHEG00000007687	smarca5	94	81.994	Fundulus_heteroclitus
ENSPKIG00000013411	smarca1	97	87.487	ENSGALG00000008431	SMARCA1	97	87.462	Gallus_gallus
ENSPKIG00000013411	smarca1	99	82.197	ENSGAFG00000017731	smarca5	95	82.197	Gambusia_affinis
ENSPKIG00000013411	smarca1	94	90.675	ENSGAGG00000023575	SMARCA1	95	90.655	Gopherus_agassizii
ENSPKIG00000013411	smarca1	73	80.316	ENSGGOG00000012841	-	92	80.580	Gorilla_gorilla
ENSPKIG00000013411	smarca1	98	85.996	ENSHGLG00000003080	SMARCA1	93	84.709	Heterocephalus_glaber_female
ENSPKIG00000013411	smarca1	98	85.936	ENSHGLG00100001102	SMARCA1	99	83.635	Heterocephalus_glaber_male
ENSPKIG00000013411	smarca1	96	83.807	ENSHCOG00000005458	smarca5	95	81.689	Hippocampus_comes
ENSPKIG00000013411	smarca1	96	92.114	ENSIPUG00000016905	Smarca1	98	91.079	Ictalurus_punctatus
ENSPKIG00000013411	smarca1	99	81.957	ENSIPUG00000005229	SMARCA5	97	81.957	Ictalurus_punctatus
ENSPKIG00000013411	smarca1	98	86.929	ENSSTOG00000014524	SMARCA1	94	85.759	Ictidomys_tridecemlineatus
ENSPKIG00000013411	smarca1	96	87.025	ENSJJAG00000002593	Smarca1	91	86.779	Jaculus_jaculus
ENSPKIG00000013411	smarca1	96	84.122	ENSKMAG00000003777	smarca5	94	82.395	Kryptolebias_marmoratus
ENSPKIG00000013411	smarca1	95	81.303	ENSLBEG00000013295	SMARCA1	100	84.363	Labrus_bergylta
ENSPKIG00000013411	smarca1	99	80.909	ENSLBEG00000018112	smarca5	95	81.504	Labrus_bergylta
ENSPKIG00000013411	smarca1	99	87.626	ENSLACG00000016697	SMARCA1	96	87.832	Latimeria_chalumnae
ENSPKIG00000013411	smarca1	96	93.901	ENSLOCG00000014591	smarca1	98	89.020	Lepisosteus_oculatus
ENSPKIG00000013411	smarca1	97	86.848	ENSLAFG00000000896	SMARCA1	96	86.848	Loxodonta_africana
ENSPKIG00000013411	smarca1	99	86.256	ENSMFAG00000002117	SMARCA1	97	86.256	Macaca_fascicularis
ENSPKIG00000013411	smarca1	98	86.880	ENSMMUG00000008818	SMARCA1	96	88.197	Macaca_mulatta
ENSPKIG00000013411	smarca1	99	86.256	ENSMNEG00000041768	SMARCA1	97	86.256	Macaca_nemestrina
ENSPKIG00000013411	smarca1	98	87.020	ENSMLEG00000043198	SMARCA1	89	87.209	Mandrillus_leucophaeus
ENSPKIG00000013411	smarca1	96	84.227	ENSMAMG00000014294	smarca5	95	81.846	Mastacembelus_armatus
ENSPKIG00000013411	smarca1	99	81.231	ENSMZEG00005009369	smarca5	95	81.351	Maylandia_zebra
ENSPKIG00000013411	smarca1	94	89.630	ENSMGAG00000007042	SMARCA1	93	89.608	Meleagris_gallopavo
ENSPKIG00000013411	smarca1	96	87.093	ENSMAUG00000008133	Smarca1	91	87.093	Mesocricetus_auratus
ENSPKIG00000013411	smarca1	98	86.826	ENSMICG00000015768	SMARCA1	89	87.012	Microcebus_murinus
ENSPKIG00000013411	smarca1	96	87.236	ENSMOCG00000009464	Smarca1	93	84.725	Microtus_ochrogaster
ENSPKIG00000013411	smarca1	99	80.368	ENSMMOG00000005547	smarca5	98	80.368	Mola_mola
ENSPKIG00000013411	smarca1	97	86.842	ENSMODG00000013187	-	95	86.815	Monodelphis_domestica
ENSPKIG00000013411	smarca1	96	83.386	ENSMALG00000002081	smarca5	98	80.727	Monopterus_albus
ENSPKIG00000013411	smarca1	96	87.447	MGP_CAROLIEiJ_G0033034	Smarca1	91	87.198	Mus_caroli
ENSPKIG00000013411	smarca1	96	87.447	ENSMUSG00000031099	Smarca1	91	87.198	Mus_musculus
ENSPKIG00000013411	smarca1	96	87.447	MGP_PahariEiJ_G0031579	Smarca1	91	87.198	Mus_pahari
ENSPKIG00000013411	smarca1	96	87.447	MGP_SPRETEiJ_G0034192	Smarca1	91	87.198	Mus_spretus
ENSPKIG00000013411	smarca1	98	85.553	ENSMPUG00000017423	SMARCA1	84	85.714	Mustela_putorius_furo
ENSPKIG00000013411	smarca1	98	84.458	ENSMLUG00000029614	SMARCA1	94	81.405	Myotis_lucifugus
ENSPKIG00000013411	smarca1	96	87.303	ENSNGAG00000006492	Smarca1	91	87.303	Nannospalax_galili
ENSPKIG00000013411	smarca1	96	84.017	ENSNBRG00000004463	smarca5	97	82.341	Neolamprologus_brichardi
ENSPKIG00000013411	smarca1	99	85.291	ENSNLEG00000015179	SMARCA1	97	85.291	Nomascus_leucogenys
ENSPKIG00000013411	smarca1	94	79.237	ENSMEUG00000008819	SMARCA1	99	79.237	Notamacropus_eugenii
ENSPKIG00000013411	smarca1	98	85.015	ENSODEG00000012163	SMARCA1	93	85.015	Octodon_degus
ENSPKIG00000013411	smarca1	99	81.332	ENSONIG00000009993	smarca5	95	81.452	Oreochromis_niloticus
ENSPKIG00000013411	smarca1	96	90.651	ENSOANG00000002862	SMARCA1	95	90.870	Ornithorhynchus_anatinus
ENSPKIG00000013411	smarca1	98	86.826	ENSOCUG00000001047	SMARCA1	89	87.012	Oryctolagus_cuniculus
ENSPKIG00000013411	smarca1	96	84.437	ENSORLG00000021998	smarca5	94	82.281	Oryzias_latipes
ENSPKIG00000013411	smarca1	96	84.332	ENSORLG00020017679	smarca5	94	82.600	Oryzias_latipes_hni
ENSPKIG00000013411	smarca1	96	84.437	ENSORLG00015017210	smarca5	94	82.401	Oryzias_latipes_hsok
ENSPKIG00000013411	smarca1	96	84.648	ENSOMEG00000000086	smarca5	94	82.604	Oryzias_melastigma
ENSPKIG00000013411	smarca1	98	85.729	ENSOGAG00000004399	SMARCA1	98	82.461	Otolemur_garnettii
ENSPKIG00000013411	smarca1	96	87.975	ENSOARG00000014638	SMARCA1	95	88.185	Ovis_aries
ENSPKIG00000013411	smarca1	98	87.124	ENSPPAG00000034647	SMARCA1	89	87.315	Pan_paniscus
ENSPKIG00000013411	smarca1	98	86.722	ENSPPRG00000008929	SMARCA1	89	86.906	Panthera_pardus
ENSPKIG00000013411	smarca1	98	84.811	ENSPTIG00000000915	SMARCA1	93	84.959	Panthera_tigris_altaica
ENSPKIG00000013411	smarca1	98	87.124	ENSPTRG00000049876	SMARCA1	93	86.880	Pan_troglodytes
ENSPKIG00000013411	smarca1	98	87.124	ENSPANG00000003871	SMARCA1	89	87.315	Papio_anubis
ENSPKIG00000013411	smarca1	94	90.675	ENSPSIG00000010101	SMARCA1	95	90.655	Pelodiscus_sinensis
ENSPKIG00000013411	smarca1	96	87.513	ENSPEMG00000017503	Smarca1	91	87.513	Peromyscus_maniculatus_bairdii
ENSPKIG00000013411	smarca1	96	89.811	ENSPCIG00000015460	SMARCA1	94	89.789	Phascolarctos_cinereus
ENSPKIG00000013411	smarca1	96	84.437	ENSPFOG00000007649	smarca5	95	82.401	Poecilia_formosa
ENSPKIG00000013411	smarca1	96	84.437	ENSPLAG00000003363	smarca5	95	82.401	Poecilia_latipinna
ENSPKIG00000013411	smarca1	96	84.454	ENSPMEG00000019849	smarca5	95	82.419	Poecilia_mexicana
ENSPKIG00000013411	smarca1	96	84.454	ENSPREG00000023250	smarca5	95	82.419	Poecilia_reticulata
ENSPKIG00000013411	smarca1	98	84.320	ENSPPYG00000020703	SMARCA1	89	84.461	Pongo_abelii
ENSPKIG00000013411	smarca1	82	78.378	ENSPCOG00000020722	SMARCA1	94	82.206	Propithecus_coquereli
ENSPKIG00000013411	smarca1	91	86.358	ENSPVAG00000003805	SMARCA1	91	79.249	Pteropus_vampyrus
ENSPKIG00000013411	smarca1	58	83.569	ENSPNYG00000012299	smarca5	91	80.822	Pundamilia_nyererei
ENSPKIG00000013411	smarca1	98	86.114	ENSRNOG00000003762	Smarca1	89	86.287	Rattus_norvegicus
ENSPKIG00000013411	smarca1	98	87.227	ENSRROG00000034167	SMARCA1	89	87.421	Rhinopithecus_roxellana
ENSPKIG00000013411	smarca1	96	87.975	ENSSBOG00000020641	SMARCA1	95	88.185	Saimiri_boliviensis_boliviensis
ENSPKIG00000013411	smarca1	94	84.979	ENSSHAG00000013518	SMARCA1	95	84.979	Sarcophilus_harrisii
ENSPKIG00000013411	smarca1	99	92.300	ENSSFOG00015009043	smarca1	98	92.300	Scleropages_formosus
ENSPKIG00000013411	smarca1	96	83.701	ENSSFOG00015016794	smarca5	98	83.701	Scleropages_formosus
ENSPKIG00000013411	smarca1	99	81.531	ENSSMAG00000004801	smarca5	94	81.531	Scophthalmus_maximus
ENSPKIG00000013411	smarca1	96	83.701	ENSSDUG00000020690	smarca5	95	81.735	Seriola_dumerili
ENSPKIG00000013411	smarca1	96	83.701	ENSSLDG00000025190	smarca5	95	81.735	Seriola_lalandi_dorsalis
ENSPKIG00000013411	smarca1	83	83.986	ENSSARG00000000842	SMARCA1	83	83.986	Sorex_araneus
ENSPKIG00000013411	smarca1	99	88.332	ENSSPUG00000000590	SMARCA1	95	86.904	Sphenodon_punctatus
ENSPKIG00000013411	smarca1	96	84.122	ENSSPAG00000002894	smarca5	95	84.263	Stegastes_partitus
ENSPKIG00000013411	smarca1	98	86.246	ENSSSCG00000012649	SMARCA1	94	85.082	Sus_scrofa
ENSPKIG00000013411	smarca1	94	90.675	ENSTGUG00000003899	-	95	90.655	Taeniopygia_guttata
ENSPKIG00000013411	smarca1	96	83.596	ENSTRUG00000014094	smarca5	94	82.004	Takifugu_rubripes
ENSPKIG00000013411	smarca1	96	82.334	ENSTNIG00000017717	smarca5	93	80.879	Tetraodon_nigroviridis
ENSPKIG00000013411	smarca1	91	85.809	ENSTBEG00000014973	SMARCA1	91	85.809	Tupaia_belangeri
ENSPKIG00000013411	smarca1	98	82.485	ENSTTRG00000006168	SMARCA1	99	82.383	Tursiops_truncatus
ENSPKIG00000013411	smarca1	98	86.515	ENSUAMG00000020201	SMARCA1	89	86.695	Ursus_americanus
ENSPKIG00000013411	smarca1	98	81.865	ENSUMAG00000004073	SMARCA1	97	82.725	Ursus_maritimus
ENSPKIG00000013411	smarca1	77	90.032	ENSVPAG00000010492	-	79	90.032	Vicugna_pacos
ENSPKIG00000013411	smarca1	98	86.826	ENSVVUG00000008878	SMARCA1	97	88.185	Vulpes_vulpes
ENSPKIG00000013411	smarca1	96	90.221	ENSXETG00000001526	smarca1	95	90.221	Xenopus_tropicalis
ENSPKIG00000013411	smarca1	99	82.096	ENSXCOG00000011170	smarca5	97	82.096	Xiphophorus_couchianus
ENSPKIG00000013411	smarca1	99	82.096	ENSXMAG00000009678	smarca5	98	84.314	Xiphophorus_maculatus