EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000014215 (Gene tree)
Gene ID: 111845533
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 9922 bases
Position: chrPGUA01000146.1:1344683-1354604
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000035200	PPR	PF01535.20	6.9e-13	1	1
ENSPKIP00000035214	PPR	PF01535.20	3.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000016142	-	2148	-	ENSPKIP00000035214	715 (aa)	-	-
ENSPKIT00000016128	-	1938	-	ENSPKIP00000035200	645 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000014215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000014215's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000014215	ptcd1	97	48.763	ENSG00000106246	PTCD1	96	48.830	Homo_sapiens
ENSPKIG00000014215	ptcd1	97	48.763	ENSG00000248919	ATP5MF-PTCD1	90	48.830	Homo_sapiens
ENSPKIG00000014215	ptcd1	80	50.991	ENSAPOG00000010679	ptcd1	85	50.991	Acanthochromis_polyacanthus
ENSPKIG00000014215	ptcd1	91	52.690	ENSAMEG00000006224	-	82	52.532	Ailuropoda_melanoleuca
ENSPKIG00000014215	ptcd1	94	49.486	ENSACIG00000017861	ptcd1	92	49.192	Amphilophus_citrinellus
ENSPKIG00000014215	ptcd1	89	50.487	ENSAOCG00000020741	-	85	50.325	Amphiprion_ocellaris
ENSPKIG00000014215	ptcd1	80	51.892	ENSAOCG00000022617	ptcd1	81	51.712	Amphiprion_ocellaris
ENSPKIG00000014215	ptcd1	89	50.487	ENSAPEG00000022632	ptcd1	85	50.487	Amphiprion_percula
ENSPKIG00000014215	ptcd1	87	53.457	ENSATEG00000007016	ptcd1	83	53.535	Anabas_testudineus
ENSPKIG00000014215	ptcd1	89	55.139	ENSAPLG00000006862	-	97	54.750	Anas_platyrhynchos
ENSPKIG00000014215	ptcd1	93	53.178	ENSACAG00000012871	-	84	53.178	Anolis_carolinensis
ENSPKIG00000014215	ptcd1	96	49.190	ENSANAG00000035790	-	98	48.397	Aotus_nancymaae
ENSPKIG00000014215	ptcd1	84	52.324	ENSACLG00000002824	ptcd1	80	51.877	Astatotilapia_calliptera
ENSPKIG00000014215	ptcd1	87	54.724	ENSAMXG00000037292	ptcd1	95	52.885	Astyanax_mexicanus
ENSPKIG00000014215	ptcd1	95	50.590	ENSBTAG00000020440	-	83	50.885	Bos_taurus
ENSPKIG00000014215	ptcd1	97	49.560	ENSCJAG00000015815	-	96	49.707	Callithrix_jacchus
ENSPKIG00000014215	ptcd1	92	53.178	ENSCAFG00000015055	-	84	52.484	Canis_familiaris
ENSPKIG00000014215	ptcd1	92	53.178	ENSCAFG00020014480	-	84	52.484	Canis_lupus_dingo
ENSPKIG00000014215	ptcd1	94	51.589	ENSCHIG00000027000	-	92	51.442	Capra_hircus
ENSPKIG00000014215	ptcd1	87	52.373	ENSTSYG00000029495	-	95	49.408	Carlito_syrichta
ENSPKIG00000014215	ptcd1	92	51.011	ENSCAPG00000014660	-	96	49.925	Cavia_aperea
ENSPKIG00000014215	ptcd1	97	50.595	ENSCPOG00000001780	-	93	49.256	Cavia_porcellus
ENSPKIG00000014215	ptcd1	96	48.830	ENSCCAG00000034025	-	96	48.480	Cebus_capucinus
ENSPKIG00000014215	ptcd1	97	48.621	ENSCATG00000040859	-	96	48.915	Cercocebus_atys
ENSPKIG00000014215	ptcd1	87	53.366	ENSCLAG00000006354	-	93	50.522	Chinchilla_lanigera
ENSPKIG00000014215	ptcd1	89	48.336	ENSCSAG00000017794	-	93	48.281	Chlorocebus_sabaeus
ENSPKIG00000014215	ptcd1	87	53.427	ENSCPBG00000020866	-	84	52.895	Chrysemys_picta_bellii
ENSPKIG00000014215	ptcd1	97	48.908	ENSCANG00000023441	-	96	49.273	Colobus_angolensis_palliatus
ENSPKIG00000014215	ptcd1	94	51.231	ENSCGRG00001023686	Ptcd1	92	49.926	Cricetulus_griseus_chok1gshd
ENSPKIG00000014215	ptcd1	96	50.675	ENSCGRG00000015031	Ptcd1	92	50.675	Cricetulus_griseus_crigri
ENSPKIG00000014215	ptcd1	87	52.066	ENSCSEG00000002378	ptcd1	84	52.066	Cynoglossus_semilaevis
ENSPKIG00000014215	ptcd1	84	52.324	ENSCVAG00000015826	ptcd1	81	52.151	Cyprinodon_variegatus
ENSPKIG00000014215	ptcd1	97	45.597	ENSCVAG00000003621	ptcd1	98	45.429	Cyprinodon_variegatus
ENSPKIG00000014215	ptcd1	93	50.224	ENSDARG00000076176	ptcd1	93	49.776	Danio_rerio
ENSPKIG00000014215	ptcd1	86	53.947	ENSDNOG00000009957	-	84	54.667	Dasypus_novemcinctus
ENSPKIG00000014215	ptcd1	96	49.043	ENSDORG00000000740	Ptcd1	97	49.046	Dipodomys_ordii
ENSPKIG00000014215	ptcd1	93	39.803	ENSEBUG00000014515	ptcd1	99	59.278	Eptatretus_burgeri
ENSPKIG00000014215	ptcd1	87	52.666	ENSEASG00005002480	-	89	51.638	Equus_asinus_asinus
ENSPKIG00000014215	ptcd1	87	53.695	ENSECAG00000016617	-	89	51.794	Equus_caballus
ENSPKIG00000014215	ptcd1	93	48.336	ENSELUG00000016517	ptcd1	90	48.261	Esox_lucius
ENSPKIG00000014215	ptcd1	94	49.329	ENSFCAG00000015069	-	90	50.152	Felis_catus
ENSPKIG00000014215	ptcd1	89	51.981	ENSFALG00000013803	-	88	51.956	Ficedula_albicollis
ENSPKIG00000014215	ptcd1	87	53.783	ENSFDAG00000006393	-	94	50.898	Fukomys_damarensis
ENSPKIG00000014215	ptcd1	75	52.601	ENSFHEG00000012491	ptcd1	87	52.601	Fundulus_heteroclitus
ENSPKIG00000014215	ptcd1	83	50.259	ENSGMOG00000007639	ptcd1	91	49.913	Gadus_morhua
ENSPKIG00000014215	ptcd1	88	52.904	ENSGALG00000004711	-	88	53.365	Gallus_gallus
ENSPKIG00000014215	ptcd1	85	51.858	ENSGAFG00000013175	ptcd1	82	51.864	Gambusia_affinis
ENSPKIG00000014215	ptcd1	84	52.830	ENSGACG00000016607	ptcd1	88	52.830	Gasterosteus_aculeatus
ENSPKIG00000014215	ptcd1	87	51.550	ENSGAGG00000021832	-	91	50.984	Gopherus_agassizii
ENSPKIG00000014215	ptcd1	97	48.763	ENSGGOG00000015123	-	96	48.830	Gorilla_gorilla
ENSPKIG00000014215	ptcd1	84	52.840	ENSHBUG00000018275	ptcd1	80	52.389	Haplochromis_burtoni
ENSPKIG00000014215	ptcd1	96	51.420	ENSHGLG00000017621	-	95	49.856	Heterocephalus_glaber_female
ENSPKIG00000014215	ptcd1	96	51.420	ENSHGLG00100007218	-	95	49.856	Heterocephalus_glaber_male
ENSPKIG00000014215	ptcd1	84	49.912	ENSHCOG00000010784	ptcd1	82	50.441	Hippocampus_comes
ENSPKIG00000014215	ptcd1	91	51.975	ENSSTOG00000001682	-	88	52.298	Ictidomys_tridecemlineatus
ENSPKIG00000014215	ptcd1	95	50.760	ENSJJAG00000000319	Ptcd1	93	50.000	Jaculus_jaculus
ENSPKIG00000014215	ptcd1	86	50.921	ENSKMAG00000008708	ptcd1	82	51.089	Kryptolebias_marmoratus
ENSPKIG00000014215	ptcd1	87	51.178	ENSLBEG00000008061	ptcd1	82	51.515	Labrus_bergylta
ENSPKIG00000014215	ptcd1	87	56.427	ENSLACG00000011172	ptcd1	84	56.833	Latimeria_chalumnae
ENSPKIG00000014215	ptcd1	95	56.080	ENSLOCG00000004833	ptcd1	95	58.117	Lepisosteus_oculatus
ENSPKIG00000014215	ptcd1	87	53.947	ENSLAFG00000002588	-	85	53.947	Loxodonta_africana
ENSPKIG00000014215	ptcd1	97	48.621	ENSMFAG00000041324	-	96	48.915	Macaca_fascicularis
ENSPKIG00000014215	ptcd1	97	48.476	ENSMMUG00000030408	-	96	48.555	Macaca_mulatta
ENSPKIG00000014215	ptcd1	97	48.621	ENSMNEG00000043786	-	96	48.915	Macaca_nemestrina
ENSPKIG00000014215	ptcd1	97	45.312	ENSMLEG00000031179	-	96	45.412	Mandrillus_leucophaeus
ENSPKIG00000014215	ptcd1	93	51.577	ENSMAMG00000007623	ptcd1	86	51.577	Mastacembelus_armatus
ENSPKIG00000014215	ptcd1	84	52.324	ENSMZEG00005012722	ptcd1	80	51.877	Maylandia_zebra
ENSPKIG00000014215	ptcd1	96	50.744	ENSMGAG00000004211	-	87	50.744	Meleagris_gallopavo
ENSPKIG00000014215	ptcd1	95	48.889	ENSMICG00000017428	-	95	48.889	Microcebus_murinus
ENSPKIG00000014215	ptcd1	86	51.933	ENSMMOG00000020243	ptcd1	88	51.635	Mola_mola
ENSPKIG00000014215	ptcd1	95	49.485	ENSMODG00000001350	-	91	51.166	Monodelphis_domestica
ENSPKIG00000014215	ptcd1	90	52.941	ENSMALG00000018442	ptcd1	83	52.288	Monopterus_albus
ENSPKIG00000014215	ptcd1	86	53.769	MGP_CAROLIEiJ_G0028011	Ptcd1	85	53.500	Mus_caroli
ENSPKIG00000014215	ptcd1	86	53.756	ENSMUSG00000029624	Ptcd1	85	53.667	Mus_musculus
ENSPKIG00000014215	ptcd1	86	53.679	MGP_PahariEiJ_G0024580	Ptcd1	85	53.679	Mus_pahari
ENSPKIG00000014215	ptcd1	86	53.589	MGP_SPRETEiJ_G0029012	Ptcd1	85	53.667	Mus_spretus
ENSPKIG00000014215	ptcd1	86	53.833	ENSMPUG00000016518	-	84	54.333	Mustela_putorius_furo
ENSPKIG00000014215	ptcd1	92	52.019	ENSMLUG00000010994	-	89	50.221	Myotis_lucifugus
ENSPKIG00000014215	ptcd1	86	51.607	ENSNBRG00000010079	ptcd1	84	51.342	Neolamprologus_brichardi
ENSPKIG00000014215	ptcd1	78	52.920	ENSNLEG00000011060	-	91	52.834	Nomascus_leucogenys
ENSPKIG00000014215	ptcd1	96	49.926	ENSMEUG00000006930	-	96	49.558	Notamacropus_eugenii
ENSPKIG00000014215	ptcd1	88	58.929	ENSOPRG00000013647	-	86	49.188	Ochotona_princeps
ENSPKIG00000014215	ptcd1	84	50.257	ENSONIG00000003168	ptcd1	94	49.830	Oreochromis_niloticus
ENSPKIG00000014215	ptcd1	80	50.839	ENSOANG00000007728	-	76	49.511	Ornithorhynchus_anatinus
ENSPKIG00000014215	ptcd1	88	51.882	ENSOCUG00000010584	-	84	51.882	Oryctolagus_cuniculus
ENSPKIG00000014215	ptcd1	84	53.287	ENSORLG00000009275	ptcd1	83	52.860	Oryzias_latipes
ENSPKIG00000014215	ptcd1	84	53.287	ENSORLG00020000988	ptcd1	83	52.860	Oryzias_latipes_hni
ENSPKIG00000014215	ptcd1	84	52.768	ENSORLG00015010557	ptcd1	83	52.340	Oryzias_latipes_hsok
ENSPKIG00000014215	ptcd1	87	51.852	ENSOMEG00000020627	ptcd1	87	51.282	Oryzias_melastigma
ENSPKIG00000014215	ptcd1	88	51.220	ENSOGAG00000010877	-	88	50.553	Otolemur_garnettii
ENSPKIG00000014215	ptcd1	94	48.421	ENSOARG00000018676	-	93	48.416	Ovis_aries
ENSPKIG00000014215	ptcd1	97	48.980	ENSPPAG00000036024	-	96	48.684	Pan_paniscus
ENSPKIG00000014215	ptcd1	95	49.852	ENSPPRG00000003478	-	95	49.852	Panthera_pardus
ENSPKIG00000014215	ptcd1	97	48.834	ENSPTRG00000019452	-	96	48.830	Pan_troglodytes
ENSPKIG00000014215	ptcd1	97	48.331	ENSPANG00000016730	-	96	48.625	Papio_anubis
ENSPKIG00000014215	ptcd1	86	52.941	ENSPSIG00000011184	-	99	52.941	Pelodiscus_sinensis
ENSPKIG00000014215	ptcd1	74	43.103	ENSPMAG00000009667	ptcd1	100	43.103	Petromyzon_marinus
ENSPKIG00000014215	ptcd1	99	48.660	ENSPCIG00000024778	-	95	48.519	Phascolarctos_cinereus
ENSPKIG00000014215	ptcd1	85	51.273	ENSPFOG00000004458	ptcd1	82	50.761	Poecilia_formosa
ENSPKIG00000014215	ptcd1	85	51.361	ENSPLAG00000011051	ptcd1	84	49.917	Poecilia_latipinna
ENSPKIG00000014215	ptcd1	85	51.613	ENSPMEG00000020547	ptcd1	82	50.850	Poecilia_mexicana
ENSPKIG00000014215	ptcd1	84	51.203	ENSPREG00000000059	ptcd1	82	50.337	Poecilia_reticulata
ENSPKIG00000014215	ptcd1	88	51.540	ENSPPYG00000017377	-	92	51.545	Pongo_abelii
ENSPKIG00000014215	ptcd1	76	55.752	ENSPCAG00000001852	-	82	55.752	Procavia_capensis
ENSPKIG00000014215	ptcd1	94	49.251	ENSPCOG00000018596	-	94	49.554	Propithecus_coquereli
ENSPKIG00000014215	ptcd1	62	60.000	ENSPVAG00000007529	-	64	60.000	Pteropus_vampyrus
ENSPKIG00000014215	ptcd1	84	52.151	ENSPNYG00000019993	ptcd1	80	51.706	Pundamilia_nyererei
ENSPKIG00000014215	ptcd1	88	54.133	ENSPNAG00000014931	ptcd1	90	54.617	Pygocentrus_nattereri
ENSPKIG00000014215	ptcd1	93	51.538	ENSRNOG00000000987	Ptcd1	93	51.767	Rattus_norvegicus
ENSPKIG00000014215	ptcd1	97	49.486	ENSRBIG00000043393	-	96	49.273	Rhinopithecus_bieti
ENSPKIG00000014215	ptcd1	97	49.486	ENSRROG00000036420	-	96	49.273	Rhinopithecus_roxellana
ENSPKIG00000014215	ptcd1	97	49.493	ENSSBOG00000024114	-	96	49.493	Saimiri_boliviensis_boliviensis
ENSPKIG00000014215	ptcd1	92	50.388	ENSSHAG00000011376	-	97	50.543	Sarcophilus_harrisii
ENSPKIG00000014215	ptcd1	98	58.890	ENSSFOG00015007909	ptcd1	92	61.439	Scleropages_formosus
ENSPKIG00000014215	ptcd1	89	48.220	ENSSMAG00000000218	ptcd1	96	48.544	Scophthalmus_maximus
ENSPKIG00000014215	ptcd1	84	53.663	ENSSDUG00000015671	ptcd1	83	53.516	Seriola_dumerili
ENSPKIG00000014215	ptcd1	85	51.759	ENSSLDG00000014261	ptcd1	83	52.196	Seriola_lalandi_dorsalis
ENSPKIG00000014215	ptcd1	91	50.000	ENSSPUG00000003540	-	88	51.672	Sphenodon_punctatus
ENSPKIG00000014215	ptcd1	88	51.555	ENSSPAG00000011049	ptcd1	82	51.823	Stegastes_partitus
ENSPKIG00000014215	ptcd1	87	53.191	ENSSSCG00000007622	-	95	51.170	Sus_scrofa
ENSPKIG00000014215	ptcd1	87	54.591	ENSTGUG00000007563	-	98	54.758	Taeniopygia_guttata
ENSPKIG00000014215	ptcd1	94	49.112	ENSTRUG00000013471	ptcd1	88	48.817	Takifugu_rubripes
ENSPKIG00000014215	ptcd1	90	51.452	ENSTNIG00000008271	ptcd1	87	50.968	Tetraodon_nigroviridis
ENSPKIG00000014215	ptcd1	94	49.924	ENSTBEG00000011021	-	92	49.924	Tupaia_belangeri
ENSPKIG00000014215	ptcd1	94	50.225	ENSTTRG00000003006	-	94	49.925	Tursiops_truncatus
ENSPKIG00000014215	ptcd1	93	50.751	ENSUAMG00000008049	-	94	50.221	Ursus_americanus
ENSPKIG00000014215	ptcd1	96	52.083	ENSVVUG00000008836	-	93	51.786	Vulpes_vulpes
ENSPKIG00000014215	ptcd1	90	48.457	ENSXETG00000009891	ptcd1	93	47.662	Xenopus_tropicalis
ENSPKIG00000014215	ptcd1	86	51.433	ENSXMAG00000015540	ptcd1	85	49.515	Xiphophorus_maculatus