EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000014278 (Gene tree)
Gene ID: 111845534
Gene Symbol: cpsf4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 2783 bases
Position: chrPGUA01000146.1:1350708-1353490
Accession: 111845534
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000035262	zf-CCCH	PF00642.24	6.7e-19	1	1
ENSPKIP00000035262	zf-CCHC	PF00098.23	5.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000016190	-	825	-	ENSPKIP00000035262	274 (aa)	XP_023670786	UPI000CD5F9A7

Gene Model

Click here to download ENSPKIG00000014278's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000014278's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000014278	cpsf4	100	84.307	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSPKIG00000014278	cpsf4	68	71.505	ENSAPOG00000004921	cpsf4	100	71.505	Acanthochromis_polyacanthus
ENSPKIG00000014278	cpsf4	100	83.942	ENSAMEG00000006252	CPSF4	100	83.942	Ailuropoda_melanoleuca
ENSPKIG00000014278	cpsf4	100	76.277	ENSACIG00000009248	cpsf4	100	77.737	Amphilophus_citrinellus
ENSPKIG00000014278	cpsf4	100	83.577	ENSAOCG00000019616	cpsf4	100	83.577	Amphiprion_ocellaris
ENSPKIG00000014278	cpsf4	100	83.577	ENSAPEG00000011679	cpsf4	100	83.577	Amphiprion_percula
ENSPKIG00000014278	cpsf4	100	83.212	ENSATEG00000007010	cpsf4	100	83.212	Anabas_testudineus
ENSPKIG00000014278	cpsf4	100	83.577	ENSACAG00000012941	CPSF4	89	83.577	Anolis_carolinensis
ENSPKIG00000014278	cpsf4	100	84.307	ENSANAG00000021360	CPSF4	100	84.307	Aotus_nancymaae
ENSPKIG00000014278	cpsf4	100	83.577	ENSACLG00000010374	cpsf4	100	83.577	Astatotilapia_calliptera
ENSPKIG00000014278	cpsf4	100	85.766	ENSAMXG00000031647	cpsf4	100	85.766	Astyanax_mexicanus
ENSPKIG00000014278	cpsf4	100	80.292	ENSBTAG00000002090	CPSF4	100	80.292	Bos_taurus
ENSPKIG00000014278	cpsf4	100	84.307	ENSCJAG00000015826	CPSF4	100	84.307	Callithrix_jacchus
ENSPKIG00000014278	cpsf4	100	83.942	ENSCAFG00000015036	CPSF4	99	86.228	Canis_familiaris
ENSPKIG00000014278	cpsf4	100	78.832	ENSCAFG00020014462	CPSF4	100	78.832	Canis_lupus_dingo
ENSPKIG00000014278	cpsf4	100	84.307	ENSCHIG00000014313	CPSF4	100	84.307	Capra_hircus
ENSPKIG00000014278	cpsf4	100	73.091	ENSTSYG00000014604	-	100	73.091	Carlito_syrichta
ENSPKIG00000014278	cpsf4	100	81.022	ENSTSYG00000005712	-	100	81.022	Carlito_syrichta
ENSPKIG00000014278	cpsf4	89	74.390	ENSTSYG00000008195	-	99	74.510	Carlito_syrichta
ENSPKIG00000014278	cpsf4	82	82.667	ENSCAPG00000013881	CPSF4	88	81.938	Cavia_aperea
ENSPKIG00000014278	cpsf4	100	80.292	ENSCPOG00000001783	CPSF4	100	80.292	Cavia_porcellus
ENSPKIG00000014278	cpsf4	100	84.307	ENSCCAG00000028291	CPSF4	100	84.307	Cebus_capucinus
ENSPKIG00000014278	cpsf4	100	84.307	ENSCATG00000038440	CPSF4	100	84.307	Cercocebus_atys
ENSPKIG00000014278	cpsf4	100	83.942	ENSCLAG00000007050	CPSF4	100	83.942	Chinchilla_lanigera
ENSPKIG00000014278	cpsf4	100	84.307	ENSCSAG00000017795	CPSF4	100	84.307	Chlorocebus_sabaeus
ENSPKIG00000014278	cpsf4	81	83.710	ENSCPBG00000020869	CPSF4	100	83.710	Chrysemys_picta_bellii
ENSPKIG00000014278	cpsf4	60	79.394	ENSCPBG00000010269	-	99	79.394	Chrysemys_picta_bellii
ENSPKIG00000014278	cpsf4	97	55.431	ENSCING00000021080	-	97	56.296	Ciona_intestinalis
ENSPKIG00000014278	cpsf4	96	52.650	ENSCSAVG00000011469	-	97	52.650	Ciona_savignyi
ENSPKIG00000014278	cpsf4	100	84.307	ENSCANG00000019384	CPSF4	100	84.307	Colobus_angolensis_palliatus
ENSPKIG00000014278	cpsf4	100	80.292	ENSCGRG00001024184	Cpsf4	100	80.292	Cricetulus_griseus_chok1gshd
ENSPKIG00000014278	cpsf4	100	83.942	ENSCGRG00000013892	Cpsf4	100	83.942	Cricetulus_griseus_crigri
ENSPKIG00000014278	cpsf4	100	83.212	ENSCSEG00000019055	cpsf4	100	83.212	Cynoglossus_semilaevis
ENSPKIG00000014278	cpsf4	100	82.117	ENSCVAG00000016528	cpsf4	100	82.117	Cyprinodon_variegatus
ENSPKIG00000014278	cpsf4	100	85.091	ENSDARG00000020217	cpsf4	100	86.545	Danio_rerio
ENSPKIG00000014278	cpsf4	100	84.307	ENSDNOG00000006344	CPSF4	100	84.307	Dasypus_novemcinctus
ENSPKIG00000014278	cpsf4	81	82.432	ENSDORG00000000742	Cpsf4	100	82.432	Dipodomys_ordii
ENSPKIG00000014278	cpsf4	100	54.110	FBgn0015621	Clp	99	54.795	Drosophila_melanogaster
ENSPKIG00000014278	cpsf4	68	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSPKIG00000014278	cpsf4	99	64.338	ENSEBUG00000012552	cpsf4	98	64.338	Eptatretus_burgeri
ENSPKIG00000014278	cpsf4	100	80.292	ENSEASG00005002487	CPSF4	100	80.292	Equus_asinus_asinus
ENSPKIG00000014278	cpsf4	100	83.942	ENSECAG00000007525	CPSF4	100	83.942	Equus_caballus
ENSPKIG00000014278	cpsf4	64	97.015	ENSEEUG00000002158	CPSF4	73	97.015	Erinaceus_europaeus
ENSPKIG00000014278	cpsf4	100	85.036	ENSELUG00000011481	cpsf4	100	85.036	Esox_lucius
ENSPKIG00000014278	cpsf4	100	83.942	ENSFCAG00000015070	CPSF4	100	83.942	Felis_catus
ENSPKIG00000014278	cpsf4	100	81.022	ENSFALG00000013799	CPSF4	100	81.022	Ficedula_albicollis
ENSPKIG00000014278	cpsf4	60	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSPKIG00000014278	cpsf4	91	83.065	ENSFDAG00000014092	CPSF4	100	83.065	Fukomys_damarensis
ENSPKIG00000014278	cpsf4	100	81.022	ENSFHEG00000010880	cpsf4	100	81.022	Fundulus_heteroclitus
ENSPKIG00000014278	cpsf4	100	80.435	ENSGMOG00000002330	cpsf4	100	80.435	Gadus_morhua
ENSPKIG00000014278	cpsf4	100	81.752	ENSGALG00000004714	CPSF4	100	81.752	Gallus_gallus
ENSPKIG00000014278	cpsf4	99	35.533	ENSGALG00000004441	-	98	35.533	Gallus_gallus
ENSPKIG00000014278	cpsf4	100	81.022	ENSGAFG00000010580	cpsf4	100	81.022	Gambusia_affinis
ENSPKIG00000014278	cpsf4	100	77.899	ENSGACG00000007792	cpsf4	100	77.899	Gasterosteus_aculeatus
ENSPKIG00000014278	cpsf4	100	84.672	ENSGAGG00000021835	CPSF4	100	84.672	Gopherus_agassizii
ENSPKIG00000014278	cpsf4	60	79.394	ENSGAGG00000020579	-	92	79.394	Gopherus_agassizii
ENSPKIG00000014278	cpsf4	100	84.307	ENSGGOG00000015131	CPSF4	100	84.307	Gorilla_gorilla
ENSPKIG00000014278	cpsf4	100	83.577	ENSHBUG00000013699	cpsf4	100	83.577	Haplochromis_burtoni
ENSPKIG00000014278	cpsf4	100	83.636	ENSHGLG00000017150	CPSF4	100	83.636	Heterocephalus_glaber_female
ENSPKIG00000014278	cpsf4	87	81.250	ENSHGLG00100009215	-	100	81.250	Heterocephalus_glaber_male
ENSPKIG00000014278	cpsf4	65	66.102	ENSHGLG00100017302	-	86	66.129	Heterocephalus_glaber_male
ENSPKIG00000014278	cpsf4	100	80.657	ENSHCOG00000004397	cpsf4	100	80.657	Hippocampus_comes
ENSPKIG00000014278	cpsf4	100	85.145	ENSIPUG00000017147	cpsf4	100	85.145	Ictalurus_punctatus
ENSPKIG00000014278	cpsf4	100	83.942	ENSSTOG00000001688	CPSF4	100	83.942	Ictidomys_tridecemlineatus
ENSPKIG00000014278	cpsf4	100	83.942	ENSJJAG00000019426	Cpsf4	100	83.942	Jaculus_jaculus
ENSPKIG00000014278	cpsf4	100	81.752	ENSKMAG00000015642	cpsf4	100	81.752	Kryptolebias_marmoratus
ENSPKIG00000014278	cpsf4	100	58.182	ENSLACG00000018470	-	100	58.182	Latimeria_chalumnae
ENSPKIG00000014278	cpsf4	100	83.212	ENSLACG00000010938	CPSF4	100	83.212	Latimeria_chalumnae
ENSPKIG00000014278	cpsf4	100	87.956	ENSLOCG00000004814	cpsf4	100	87.956	Lepisosteus_oculatus
ENSPKIG00000014278	cpsf4	100	83.577	ENSLAFG00000000159	CPSF4	100	83.577	Loxodonta_africana
ENSPKIG00000014278	cpsf4	100	84.307	ENSMFAG00000001462	CPSF4	100	84.307	Macaca_fascicularis
ENSPKIG00000014278	cpsf4	100	84.307	ENSMMUG00000019191	CPSF4	100	84.307	Macaca_mulatta
ENSPKIG00000014278	cpsf4	100	84.307	ENSMNEG00000032306	CPSF4	100	84.307	Macaca_nemestrina
ENSPKIG00000014278	cpsf4	100	84.307	ENSMLEG00000034721	CPSF4	100	84.307	Mandrillus_leucophaeus
ENSPKIG00000014278	cpsf4	100	83.212	ENSMAMG00000006244	cpsf4	100	83.212	Mastacembelus_armatus
ENSPKIG00000014278	cpsf4	100	83.577	ENSMZEG00005007515	cpsf4	100	83.577	Maylandia_zebra
ENSPKIG00000014278	cpsf4	88	79.583	ENSMGAG00000004235	CPSF4	100	79.583	Meleagris_gallopavo
ENSPKIG00000014278	cpsf4	100	83.942	ENSMAUG00000021253	Cpsf4	100	83.942	Mesocricetus_auratus
ENSPKIG00000014278	cpsf4	100	83.942	ENSMICG00000017429	CPSF4	100	83.942	Microcebus_murinus
ENSPKIG00000014278	cpsf4	100	83.942	ENSMOCG00000014901	Cpsf4	100	83.942	Microtus_ochrogaster
ENSPKIG00000014278	cpsf4	100	82.847	ENSMMOG00000001813	cpsf4	95	87.879	Mola_mola
ENSPKIG00000014278	cpsf4	100	85.766	ENSMODG00000001367	CPSF4	100	85.766	Monodelphis_domestica
ENSPKIG00000014278	cpsf4	100	82.482	ENSMALG00000012611	cpsf4	100	82.482	Monopterus_albus
ENSPKIG00000014278	cpsf4	100	83.942	MGP_CAROLIEiJ_G0028012	Cpsf4	100	83.942	Mus_caroli
ENSPKIG00000014278	cpsf4	100	83.942	ENSMUSG00000029625	Cpsf4	100	83.942	Mus_musculus
ENSPKIG00000014278	cpsf4	100	83.942	MGP_PahariEiJ_G0024581	Cpsf4	100	83.942	Mus_pahari
ENSPKIG00000014278	cpsf4	100	83.942	MGP_SPRETEiJ_G0029013	Cpsf4	100	83.942	Mus_spretus
ENSPKIG00000014278	cpsf4	100	83.942	ENSMPUG00000016508	CPSF4	100	83.942	Mustela_putorius_furo
ENSPKIG00000014278	cpsf4	88	78.333	ENSMLUG00000010980	CPSF4	100	78.333	Myotis_lucifugus
ENSPKIG00000014278	cpsf4	100	84.307	ENSNGAG00000001567	Cpsf4	100	84.307	Nannospalax_galili
ENSPKIG00000014278	cpsf4	91	82.800	ENSNBRG00000003943	cpsf4	98	82.800	Neolamprologus_brichardi
ENSPKIG00000014278	cpsf4	100	82.847	ENSNLEG00000011074	CPSF4	100	82.847	Nomascus_leucogenys
ENSPKIG00000014278	cpsf4	100	85.766	ENSMEUG00000006955	CPSF4	100	85.766	Notamacropus_eugenii
ENSPKIG00000014278	cpsf4	100	83.577	ENSOPRG00000013663	CPSF4	100	83.577	Ochotona_princeps
ENSPKIG00000014278	cpsf4	99	68.148	ENSODEG00000018283	-	91	68.148	Octodon_degus
ENSPKIG00000014278	cpsf4	100	83.942	ENSODEG00000011181	-	100	83.942	Octodon_degus
ENSPKIG00000014278	cpsf4	100	65.468	ENSODEG00000009779	-	100	65.468	Octodon_degus
ENSPKIG00000014278	cpsf4	100	83.212	ENSONIG00000008495	cpsf4	100	83.212	Oreochromis_niloticus
ENSPKIG00000014278	cpsf4	100	53.497	ENSOANG00000009568	-	100	53.497	Ornithorhynchus_anatinus
ENSPKIG00000014278	cpsf4	88	83.333	ENSOANG00000007729	CPSF4	100	83.333	Ornithorhynchus_anatinus
ENSPKIG00000014278	cpsf4	100	83.577	ENSOCUG00000002437	CPSF4	70	83.577	Oryctolagus_cuniculus
ENSPKIG00000014278	cpsf4	100	82.482	ENSORLG00000022798	cpsf4	100	82.482	Oryzias_latipes
ENSPKIG00000014278	cpsf4	100	82.482	ENSORLG00020008548	cpsf4	100	82.482	Oryzias_latipes_hni
ENSPKIG00000014278	cpsf4	100	82.117	ENSORLG00015019575	cpsf4	100	82.117	Oryzias_latipes_hsok
ENSPKIG00000014278	cpsf4	100	82.117	ENSOMEG00000005176	cpsf4	100	82.117	Oryzias_melastigma
ENSPKIG00000014278	cpsf4	100	83.942	ENSOGAG00000010884	CPSF4	100	83.942	Otolemur_garnettii
ENSPKIG00000014278	cpsf4	100	74.552	ENSOARG00000018668	CPSF4	100	74.552	Ovis_aries
ENSPKIG00000014278	cpsf4	100	84.307	ENSPPAG00000043355	CPSF4	100	84.307	Pan_paniscus
ENSPKIG00000014278	cpsf4	100	83.942	ENSPPRG00000003134	CPSF4	100	83.942	Panthera_pardus
ENSPKIG00000014278	cpsf4	90	83.806	ENSPTIG00000005604	CPSF4	90	83.806	Panthera_tigris_altaica
ENSPKIG00000014278	cpsf4	100	84.307	ENSPTRG00000019453	CPSF4	100	84.307	Pan_troglodytes
ENSPKIG00000014278	cpsf4	100	84.307	ENSPANG00000023123	CPSF4	100	84.307	Papio_anubis
ENSPKIG00000014278	cpsf4	81	56.951	ENSPSIG00000018198	-	100	56.951	Pelodiscus_sinensis
ENSPKIG00000014278	cpsf4	81	83.258	ENSPSIG00000011229	CPSF4	100	83.258	Pelodiscus_sinensis
ENSPKIG00000014278	cpsf4	100	72.263	ENSPMGG00000017735	cpsf4	100	72.263	Periophthalmus_magnuspinnatus
ENSPKIG00000014278	cpsf4	100	83.942	ENSPEMG00000004508	Cpsf4	100	83.942	Peromyscus_maniculatus_bairdii
ENSPKIG00000014278	cpsf4	100	85.766	ENSPCIG00000024776	CPSF4	100	85.766	Phascolarctos_cinereus
ENSPKIG00000014278	cpsf4	100	81.022	ENSPFOG00000014912	cpsf4	100	81.022	Poecilia_formosa
ENSPKIG00000014278	cpsf4	100	74.453	ENSPLAG00000009599	cpsf4	100	74.453	Poecilia_latipinna
ENSPKIG00000014278	cpsf4	100	81.022	ENSPMEG00000009790	cpsf4	100	81.022	Poecilia_mexicana
ENSPKIG00000014278	cpsf4	100	80.292	ENSPREG00000018166	cpsf4	100	80.292	Poecilia_reticulata
ENSPKIG00000014278	cpsf4	87	83.264	ENSPPYG00000017378	CPSF4	100	83.264	Pongo_abelii
ENSPKIG00000014278	cpsf4	100	83.212	ENSPCAG00000001892	CPSF4	100	83.212	Procavia_capensis
ENSPKIG00000014278	cpsf4	100	83.942	ENSPCOG00000012771	CPSF4	100	83.942	Propithecus_coquereli
ENSPKIG00000014278	cpsf4	100	78.102	ENSPVAG00000007531	CPSF4	100	78.102	Pteropus_vampyrus
ENSPKIG00000014278	cpsf4	100	83.577	ENSPNYG00000018559	cpsf4	100	83.577	Pundamilia_nyererei
ENSPKIG00000014278	cpsf4	100	86.594	ENSPNAG00000003736	cpsf4	100	86.594	Pygocentrus_nattereri
ENSPKIG00000014278	cpsf4	100	79.927	ENSRNOG00000000985	Cpsf4	100	79.927	Rattus_norvegicus
ENSPKIG00000014278	cpsf4	87	83.682	ENSRBIG00000033886	CPSF4	100	83.682	Rhinopithecus_bieti
ENSPKIG00000014278	cpsf4	100	80.657	ENSRROG00000040431	CPSF4	100	80.657	Rhinopithecus_roxellana
ENSPKIG00000014278	cpsf4	100	84.307	ENSSBOG00000020493	CPSF4	100	84.307	Saimiri_boliviensis_boliviensis
ENSPKIG00000014278	cpsf4	100	85.766	ENSSHAG00000011533	CPSF4	100	85.766	Sarcophilus_harrisii
ENSPKIG00000014278	cpsf4	100	93.841	ENSSFOG00015007883	cpsf4	100	93.841	Scleropages_formosus
ENSPKIG00000014278	cpsf4	100	77.737	ENSSMAG00000006374	cpsf4	100	77.737	Scophthalmus_maximus
ENSPKIG00000014278	cpsf4	100	84.307	ENSSDUG00000018887	cpsf4	100	84.307	Seriola_dumerili
ENSPKIG00000014278	cpsf4	100	83.942	ENSSLDG00000019078	cpsf4	100	83.942	Seriola_lalandi_dorsalis
ENSPKIG00000014278	cpsf4	87	83.264	ENSSARG00000012416	CPSF4	100	83.264	Sorex_araneus
ENSPKIG00000014278	cpsf4	100	85.036	ENSSPUG00000003549	CPSF4	100	85.036	Sphenodon_punctatus
ENSPKIG00000014278	cpsf4	96	56.274	ENSSPUG00000014803	-	97	56.274	Sphenodon_punctatus
ENSPKIG00000014278	cpsf4	100	79.927	ENSSPAG00000006174	cpsf4	100	79.927	Stegastes_partitus
ENSPKIG00000014278	cpsf4	100	80.292	ENSSSCG00000026896	CPSF4	100	80.292	Sus_scrofa
ENSPKIG00000014278	cpsf4	100	80.072	ENSTGUG00000007552	CPSF4	100	80.072	Taeniopygia_guttata
ENSPKIG00000014278	cpsf4	100	81.387	ENSTRUG00000024220	cpsf4	100	81.387	Takifugu_rubripes
ENSPKIG00000014278	cpsf4	100	80.292	ENSTNIG00000006265	cpsf4	100	80.657	Tetraodon_nigroviridis
ENSPKIG00000014278	cpsf4	87	74.477	ENSTBEG00000011406	CPSF4	100	74.477	Tupaia_belangeri
ENSPKIG00000014278	cpsf4	100	71.898	ENSTTRG00000003007	CPSF4	100	71.898	Tursiops_truncatus
ENSPKIG00000014278	cpsf4	92	78.571	ENSUAMG00000008051	CPSF4	85	78.571	Ursus_americanus
ENSPKIG00000014278	cpsf4	100	79.927	ENSUMAG00000009474	CPSF4	100	79.927	Ursus_maritimus
ENSPKIG00000014278	cpsf4	100	80.292	ENSVVUG00000008824	CPSF4	100	80.292	Vulpes_vulpes
ENSPKIG00000014278	cpsf4	99	59.041	ENSXETG00000004641	cpsf4l	99	59.041	Xenopus_tropicalis
ENSPKIG00000014278	cpsf4	100	80.282	ENSXETG00000009892	cpsf4	100	79.930	Xenopus_tropicalis
ENSPKIG00000014278	cpsf4	100	80.657	ENSXCOG00000016040	cpsf4	100	80.657	Xiphophorus_couchianus
ENSPKIG00000014278	cpsf4	100	81.022	ENSXMAG00000024670	cpsf4	100	81.022	Xiphophorus_maculatus