EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000015109 (Gene tree)
Gene ID: 111859192
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 5193 bases
Position: chrPGUA01000371.1:235141-240333
Accession: 111859192
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000036596	HVSL	PF09749.9	2.9e-64	1	1
ENSPKIP00000036616	HVSL	PF09749.9	2.2e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000017566	-	912	-	ENSPKIP00000036616	303 (aa)	-	-
ENSPKIT00000017544	-	888	-	ENSPKIP00000036596	295 (aa)	XP_023697449	UPI000CD5EDE3

Gene Model

Click here to download ENSPKIG00000015109's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000015109's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000015109	usb1	76	55.111	ENSG00000103005	USB1	99	55.399	Homo_sapiens
ENSPKIG00000015109	usb1	99	55.184	ENSAPOG00000011942	usb1	86	61.538	Acanthochromis_polyacanthus
ENSPKIG00000015109	usb1	80	52.321	ENSAMEG00000017205	USB1	96	49.807	Ailuropoda_melanoleuca
ENSPKIG00000015109	usb1	75	62.332	ENSACIG00000012234	usb1	82	62.332	Amphilophus_citrinellus
ENSPKIG00000015109	usb1	99	55.518	ENSAOCG00000014831	usb1	90	58.687	Amphiprion_ocellaris
ENSPKIG00000015109	usb1	99	55.853	ENSAPEG00000000296	usb1	90	59.073	Amphiprion_percula
ENSPKIG00000015109	usb1	99	55.705	ENSATEG00000009348	usb1	80	64.444	Anabas_testudineus
ENSPKIG00000015109	usb1	75	58.667	ENSAPLG00000002756	USB1	99	58.667	Anas_platyrhynchos
ENSPKIG00000015109	usb1	75	54.425	ENSACAG00000015481	USB1	99	54.425	Anolis_carolinensis
ENSPKIG00000015109	usb1	76	54.667	ENSANAG00000035640	USB1	96	51.163	Aotus_nancymaae
ENSPKIG00000015109	usb1	81	59.836	ENSACLG00000020586	usb1	99	55.518	Astatotilapia_calliptera
ENSPKIG00000015109	usb1	93	55.596	ENSAMXG00000040146	usb1	91	55.596	Astyanax_mexicanus
ENSPKIG00000015109	usb1	99	48.136	ENSBTAG00000015758	USB1	96	50.781	Bos_taurus
ENSPKIG00000015109	usb1	76	55.111	ENSCJAG00000011733	USB1	96	52.157	Callithrix_jacchus
ENSPKIG00000015109	usb1	75	53.812	ENSCAFG00000008556	USB1	67	50.800	Canis_familiaris
ENSPKIG00000015109	usb1	84	49.804	ENSCAFG00020009263	USB1	96	49.804	Canis_lupus_dingo
ENSPKIG00000015109	usb1	99	47.797	ENSCHIG00000024290	USB1	91	51.373	Capra_hircus
ENSPKIG00000015109	usb1	80	52.101	ENSTSYG00000006997	USB1	96	50.588	Carlito_syrichta
ENSPKIG00000015109	usb1	75	42.986	ENSCAPG00000009057	USB1	95	42.986	Cavia_aperea
ENSPKIG00000015109	usb1	75	53.846	ENSCPOG00000014325	USB1	83	53.846	Cavia_porcellus
ENSPKIG00000015109	usb1	76	55.111	ENSCCAG00000022132	USB1	96	51.550	Cebus_capucinus
ENSPKIG00000015109	usb1	76	55.556	ENSCATG00000032174	USB1	93	53.226	Cercocebus_atys
ENSPKIG00000015109	usb1	76	55.111	ENSCSAG00000004783	USB1	93	53.226	Chlorocebus_sabaeus
ENSPKIG00000015109	usb1	75	58.482	ENSCPBG00000026943	USB1	81	58.482	Chrysemys_picta_bellii
ENSPKIG00000015109	usb1	76	35.294	ENSCING00000011490	-	95	34.363	Ciona_intestinalis
ENSPKIG00000015109	usb1	79	30.894	ENSCSAVG00000000894	-	90	30.859	Ciona_savignyi
ENSPKIG00000015109	usb1	82	54.321	ENSCANG00000037135	USB1	94	54.435	Colobus_angolensis_palliatus
ENSPKIG00000015109	usb1	99	46.441	ENSCGRG00001011243	USB1	97	49.237	Cricetulus_griseus_chok1gshd
ENSPKIG00000015109	usb1	99	46.441	ENSCGRG00000013252	USB1	97	49.237	Cricetulus_griseus_crigri
ENSPKIG00000015109	usb1	99	53.378	ENSCSEG00000013881	usb1	88	58.436	Cynoglossus_semilaevis
ENSPKIG00000015109	usb1	75	59.031	ENSCVAG00000009252	usb1	97	59.031	Cyprinodon_variegatus
ENSPKIG00000015109	usb1	76	63.877	ENSDARG00000003841	usb1	82	63.877	Danio_rerio
ENSPKIG00000015109	usb1	99	46.780	ENSDORG00000001888	Usb1	96	49.804	Dipodomys_ordii
ENSPKIG00000015109	usb1	80	37.500	FBgn0037713	CG16790	96	37.549	Drosophila_melanogaster
ENSPKIG00000015109	usb1	99	42.034	ENSETEG00000019682	USB1	98	43.893	Echinops_telfairi
ENSPKIG00000015109	usb1	75	48.661	ENSEBUG00000005889	usb1	78	48.661	Eptatretus_burgeri
ENSPKIG00000015109	usb1	99	47.458	ENSEASG00005005484	USB1	84	55.605	Equus_asinus_asinus
ENSPKIG00000015109	usb1	99	47.797	ENSECAG00000019493	USB1	77	56.054	Equus_caballus
ENSPKIG00000015109	usb1	58	49.412	ENSEEUG00000000154	USB1	64	49.412	Erinaceus_europaeus
ENSPKIG00000015109	usb1	78	63.675	ENSELUG00000010974	usb1	85	63.675	Esox_lucius
ENSPKIG00000015109	usb1	82	52.459	ENSFCAG00000002693	USB1	91	52.459	Felis_catus
ENSPKIG00000015109	usb1	76	58.036	ENSFALG00000006876	USB1	84	58.036	Ficedula_albicollis
ENSPKIG00000015109	usb1	99	44.407	ENSFDAG00000010052	USB1	96	48.062	Fukomys_damarensis
ENSPKIG00000015109	usb1	89	52.632	ENSFHEG00000012334	usb1	80	62.500	Fundulus_heteroclitus
ENSPKIG00000015109	usb1	75	61.086	ENSGMOG00000004228	usb1	99	61.086	Gadus_morhua
ENSPKIG00000015109	usb1	75	56.951	ENSGALG00000035604	USB1	96	52.988	Gallus_gallus
ENSPKIG00000015109	usb1	99	55.853	ENSGAFG00000021890	usb1	83	64.224	Gambusia_affinis
ENSPKIG00000015109	usb1	76	61.333	ENSGACG00000003257	usb1	81	61.333	Gasterosteus_aculeatus
ENSPKIG00000015109	usb1	99	49.492	ENSGAGG00000022572	USB1	82	58.482	Gopherus_agassizii
ENSPKIG00000015109	usb1	76	55.111	ENSGGOG00000017147	USB1	96	51.550	Gorilla_gorilla
ENSPKIG00000015109	usb1	83	59.919	ENSHBUG00000009823	usb1	99	56.229	Haplochromis_burtoni
ENSPKIG00000015109	usb1	99	46.780	ENSHGLG00000016078	USB1	94	49.225	Heterocephalus_glaber_female
ENSPKIG00000015109	usb1	99	46.780	ENSHGLG00100005562	USB1	94	49.225	Heterocephalus_glaber_male
ENSPKIG00000015109	usb1	73	62.037	ENSHCOG00000015633	usb1	98	57.255	Hippocampus_comes
ENSPKIG00000015109	usb1	99	54.072	ENSIPUG00000008601	usb1	93	56.410	Ictalurus_punctatus
ENSPKIG00000015109	usb1	75	55.605	ENSSTOG00000007548	USB1	96	50.190	Ictidomys_tridecemlineatus
ENSPKIG00000015109	usb1	99	47.619	ENSJJAG00000021859	Usb1	90	52.263	Jaculus_jaculus
ENSPKIG00000015109	usb1	99	55.776	ENSKMAG00000007200	usb1	99	55.776	Kryptolebias_marmoratus
ENSPKIG00000015109	usb1	69	59.903	ENSLBEG00000008452	usb1	66	59.903	Labrus_bergylta
ENSPKIG00000015109	usb1	84	50.000	ENSLACG00000000105	USB1	70	56.931	Latimeria_chalumnae
ENSPKIG00000015109	usb1	99	52.273	ENSLOCG00000000465	usb1	99	52.805	Lepisosteus_oculatus
ENSPKIG00000015109	usb1	84	43.295	ENSLAFG00000002267	USB1	96	43.295	Loxodonta_africana
ENSPKIG00000015109	usb1	86	51.562	ENSMFAG00000003926	USB1	93	52.823	Macaca_fascicularis
ENSPKIG00000015109	usb1	86	51.562	ENSMMUG00000022669	USB1	93	52.823	Macaca_mulatta
ENSPKIG00000015109	usb1	86	51.172	ENSMNEG00000042487	USB1	93	52.419	Macaca_nemestrina
ENSPKIG00000015109	usb1	86	51.562	ENSMLEG00000028756	USB1	93	52.823	Mandrillus_leucophaeus
ENSPKIG00000015109	usb1	99	53.716	ENSMAMG00000015092	usb1	81	63.111	Mastacembelus_armatus
ENSPKIG00000015109	usb1	81	59.836	ENSMZEG00005010008	usb1	98	55.636	Maylandia_zebra
ENSPKIG00000015109	usb1	99	46.441	ENSMAUG00000007832	Usb1	96	50.193	Mesocricetus_auratus
ENSPKIG00000015109	usb1	75	56.054	ENSMICG00000004900	USB1	84	56.054	Microcebus_murinus
ENSPKIG00000015109	usb1	99	48.136	ENSMOCG00000022647	Usb1	96	52.140	Microtus_ochrogaster
ENSPKIG00000015109	usb1	75	61.883	ENSMMOG00000000490	usb1	86	61.883	Mola_mola
ENSPKIG00000015109	usb1	73	53.917	ENSMODG00000014067	USB1	95	50.775	Monodelphis_domestica
ENSPKIG00000015109	usb1	79	61.017	ENSMALG00000005930	usb1	82	61.017	Monopterus_albus
ENSPKIG00000015109	usb1	84	49.035	MGP_CAROLIEiJ_G0031421	Usb1	100	47.788	Mus_caroli
ENSPKIG00000015109	usb1	99	45.763	ENSMUSG00000031792	Usb1	100	47.788	Mus_musculus
ENSPKIG00000015109	usb1	75	53.363	MGP_PahariEiJ_G0023019	Usb1	100	50.427	Mus_pahari
ENSPKIG00000015109	usb1	84	49.035	MGP_SPRETEiJ_G0032540	Usb1	96	49.035	Mus_spretus
ENSPKIG00000015109	usb1	80	51.899	ENSMPUG00000004684	USB1	92	49.035	Mustela_putorius_furo
ENSPKIG00000015109	usb1	75	54.260	ENSMLUG00000007400	USB1	97	54.260	Myotis_lucifugus
ENSPKIG00000015109	usb1	75	55.157	ENSNGAG00000009703	Usb1	96	49.807	Nannospalax_galili
ENSPKIG00000015109	usb1	83	55.466	ENSNBRG00000008747	usb1	99	61.502	Neolamprologus_brichardi
ENSPKIG00000015109	usb1	71	54.502	ENSNLEG00000003340	USB1	96	50.820	Nomascus_leucogenys
ENSPKIG00000015109	usb1	99	44.369	ENSODEG00000016214	USB1	84	52.466	Octodon_degus
ENSPKIG00000015109	usb1	99	56.757	ENSONIG00000011063	usb1	99	55.743	Oreochromis_niloticus
ENSPKIG00000015109	usb1	75	51.111	ENSOANG00000012118	USB1	94	51.111	Ornithorhynchus_anatinus
ENSPKIG00000015109	usb1	76	62.222	ENSORLG00000012479	usb1	82	62.222	Oryzias_latipes
ENSPKIG00000015109	usb1	76	61.778	ENSORLG00020018671	usb1	83	61.778	Oryzias_latipes_hni
ENSPKIG00000015109	usb1	76	62.222	ENSORLG00015009679	usb1	83	62.222	Oryzias_latipes_hsok
ENSPKIG00000015109	usb1	76	62.222	ENSOMEG00000012930	usb1	81	62.222	Oryzias_melastigma
ENSPKIG00000015109	usb1	80	50.633	ENSOGAG00000003273	USB1	96	48.828	Otolemur_garnettii
ENSPKIG00000015109	usb1	86	51.765	ENSOARG00000001107	USB1	95	51.587	Ovis_aries
ENSPKIG00000015109	usb1	76	54.667	ENSPPAG00000042137	USB1	96	51.163	Pan_paniscus
ENSPKIG00000015109	usb1	99	47.119	ENSPPRG00000024797	USB1	98	46.441	Panthera_pardus
ENSPKIG00000015109	usb1	99	47.119	ENSPTIG00000007506	USB1	98	46.441	Panthera_tigris_altaica
ENSPKIG00000015109	usb1	72	55.399	ENSPTRG00000008172	USB1	99	55.399	Pan_troglodytes
ENSPKIG00000015109	usb1	86	51.562	ENSPANG00000025138	USB1	93	52.823	Papio_anubis
ENSPKIG00000015109	usb1	75	46.667	ENSPSIG00000004305	USB1	99	46.667	Pelodiscus_sinensis
ENSPKIG00000015109	usb1	75	59.193	ENSPMGG00000017725	usb1	85	59.193	Periophthalmus_magnuspinnatus
ENSPKIG00000015109	usb1	82	51.230	ENSPEMG00000016183	Usb1	96	48.659	Peromyscus_maniculatus_bairdii
ENSPKIG00000015109	usb1	73	51.364	ENSPMAG00000000462	usb1	93	51.364	Petromyzon_marinus
ENSPKIG00000015109	usb1	99	55.892	ENSPFOG00000011130	usb1	83	64.655	Poecilia_formosa
ENSPKIG00000015109	usb1	99	55.892	ENSPLAG00000009820	usb1	83	64.655	Poecilia_latipinna
ENSPKIG00000015109	usb1	99	56.187	ENSPMEG00000006402	usb1	83	64.655	Poecilia_mexicana
ENSPKIG00000015109	usb1	89	55.639	ENSPREG00000001047	usb1	81	67.500	Poecilia_reticulata
ENSPKIG00000015109	usb1	71	51.659	ENSPPYG00000007401	USB1	96	47.967	Pongo_abelii
ENSPKIG00000015109	usb1	82	53.086	ENSPCOG00000022612	USB1	96	52.549	Propithecus_coquereli
ENSPKIG00000015109	usb1	84	50.000	ENSPVAG00000004613	USB1	96	50.000	Pteropus_vampyrus
ENSPKIG00000015109	usb1	99	57.095	ENSPNYG00000022262	usb1	99	56.081	Pundamilia_nyererei
ENSPKIG00000015109	usb1	93	54.676	ENSPNAG00000011736	usb1	95	54.676	Pygocentrus_nattereri
ENSPKIG00000015109	usb1	84	48.649	ENSRNOG00000013216	Usb1	96	48.649	Rattus_norvegicus
ENSPKIG00000015109	usb1	82	48.971	ENSRBIG00000044466	USB1	99	55.399	Rhinopithecus_bieti
ENSPKIG00000015109	usb1	82	53.498	ENSRROG00000029211	USB1	93	53.629	Rhinopithecus_roxellana
ENSPKIG00000015109	usb1	76	55.556	ENSSBOG00000029362	USB1	93	53.226	Saimiri_boliviensis_boliviensis
ENSPKIG00000015109	usb1	73	51.376	ENSSHAG00000006993	USB1	89	52.679	Sarcophilus_harrisii
ENSPKIG00000015109	usb1	93	64.388	ENSSFOG00015023663	usb1	86	64.388	Scleropages_formosus
ENSPKIG00000015109	usb1	98	49.508	ENSSMAG00000015834	usb1	81	57.322	Scophthalmus_maximus
ENSPKIG00000015109	usb1	75	64.126	ENSSDUG00000002949	usb1	83	64.126	Seriola_dumerili
ENSPKIG00000015109	usb1	76	64.000	ENSSLDG00000014174	usb1	80	64.000	Seriola_lalandi_dorsalis
ENSPKIG00000015109	usb1	71	54.808	ENSSPUG00000006741	USB1	97	54.808	Sphenodon_punctatus
ENSPKIG00000015109	usb1	99	54.027	ENSSPAG00000007484	usb1	80	62.661	Stegastes_partitus
ENSPKIG00000015109	usb1	75	55.605	ENSSSCG00000002807	USB1	96	50.579	Sus_scrofa
ENSPKIG00000015109	usb1	71	60.287	ENSTGUG00000004792	USB1	88	57.778	Taeniopygia_guttata
ENSPKIG00000015109	usb1	99	53.000	ENSTRUG00000021069	usb1	99	51.667	Takifugu_rubripes
ENSPKIG00000015109	usb1	99	47.651	ENSTNIG00000000626	usb1	83	56.502	Tetraodon_nigroviridis
ENSPKIG00000015109	usb1	78	39.224	ENSTBEG00000001507	USB1	97	39.474	Tupaia_belangeri
ENSPKIG00000015109	usb1	80	52.743	ENSUAMG00000016823	USB1	96	50.193	Ursus_americanus
ENSPKIG00000015109	usb1	71	53.846	ENSUMAG00000021369	USB1	97	53.846	Ursus_maritimus
ENSPKIG00000015109	usb1	75	53.812	ENSVVUG00000023700	USB1	86	53.812	Vulpes_vulpes
ENSPKIG00000015109	usb1	73	54.587	ENSXETG00000013795	usb1	98	52.653	Xenopus_tropicalis
ENSPKIG00000015109	usb1	78	64.224	ENSXMAG00000024687	usb1	70	63.721	Xiphophorus_maculatus