EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000015165 (Gene tree)
Gene ID: 111841530
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 12215 bases
Position: chrPGUA01000842.1:43373-55587
Accession: 111841530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000036695	RRM_1	PF00076.22	1.1e-17	1	1
ENSPKIP00000036745	RRM_1	PF00076.22	4.7e-15	1	1
ENSPKIP00000036718	RRM_1	PF00076.22	3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000017698	-	1777	-	ENSPKIP00000036745	395 (aa)	XP_023663113	UPI000CD649F4
ENSPKIT00000017645	-	4413	-	ENSPKIP00000036695	408 (aa)	XP_023663111	UPI000CD5D20C
ENSPKIT00000017669	-	1763	-	ENSPKIP00000036718	392 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000015165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000015165's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000015165	rbm42	100	73.253	ENSAPOG00000015109	rbm42	100	74.519	Acanthochromis_polyacanthus
ENSPKIG00000015165	rbm42	100	70.290	ENSACIG00000010771	rbm42	100	68.900	Amphilophus_citrinellus
ENSPKIG00000015165	rbm42	100	73.494	ENSAOCG00000008873	rbm42	100	74.760	Amphiprion_ocellaris
ENSPKIG00000015165	rbm42	100	73.494	ENSAPEG00000012051	rbm42	99	74.760	Amphiprion_percula
ENSPKIG00000015165	rbm42	100	72.115	ENSATEG00000000536	rbm42	100	73.621	Anabas_testudineus
ENSPKIG00000015165	rbm42	100	72.947	ENSACLG00000004988	rbm42	100	73.861	Astatotilapia_calliptera
ENSPKIG00000015165	rbm42	100	85.230	ENSAMXG00000016545	rbm42	100	85.230	Astyanax_mexicanus
ENSPKIG00000015165	rbm42	97	69.704	ENSCSEG00000010248	rbm42	100	71.007	Cynoglossus_semilaevis
ENSPKIG00000015165	rbm42	100	69.928	ENSCVAG00000015589	rbm42	100	71.429	Cyprinodon_variegatus
ENSPKIG00000015165	rbm42	100	75.610	ENSDARG00000039910	rbm42	100	78.537	Danio_rerio
ENSPKIG00000015165	rbm42	100	80.096	ENSELUG00000022403	rbm42	100	80.096	Esox_lucius
ENSPKIG00000015165	rbm42	54	80.357	ENSFHEG00000006764	rbm42	87	74.525	Fundulus_heteroclitus
ENSPKIG00000015165	rbm42	100	67.150	ENSGMOG00000012660	rbm42	100	69.544	Gadus_morhua
ENSPKIG00000015165	rbm42	76	70.533	ENSGAFG00000009059	rbm42	100	70.533	Gambusia_affinis
ENSPKIG00000015165	rbm42	100	69.952	ENSGACG00000004170	rbm42	100	71.084	Gasterosteus_aculeatus
ENSPKIG00000015165	rbm42	100	72.947	ENSHBUG00000011141	rbm42	100	73.861	Haplochromis_burtoni
ENSPKIG00000015165	rbm42	100	71.703	ENSHCOG00000021214	rbm42	100	71.703	Hippocampus_comes
ENSPKIG00000015165	rbm42	100	82.850	ENSIPUG00000022365	rbm42	99	82.850	Ictalurus_punctatus
ENSPKIG00000015165	rbm42	94	67.192	ENSKMAG00000015287	rbm42	99	67.105	Kryptolebias_marmoratus
ENSPKIG00000015165	rbm42	85	69.296	ENSLBEG00000004578	-	96	69.944	Labrus_bergylta
ENSPKIG00000015165	rbm42	100	71.154	ENSLBEG00000017547	rbm42	100	71.703	Labrus_bergylta
ENSPKIG00000015165	rbm42	100	79.286	ENSLOCG00000003368	rbm42	100	80.952	Lepisosteus_oculatus
ENSPKIG00000015165	rbm42	100	71.223	ENSMAMG00000006708	rbm42	100	73.684	Mastacembelus_armatus
ENSPKIG00000015165	rbm42	100	72.947	ENSMZEG00005025234	rbm42	100	73.861	Maylandia_zebra
ENSPKIG00000015165	rbm42	100	63.373	ENSMALG00000015720	rbm42	100	72.487	Monopterus_albus
ENSPKIG00000015165	rbm42	100	73.381	ENSONIG00000008029	rbm42	100	74.641	Oreochromis_niloticus
ENSPKIG00000015165	rbm42	100	56.582	ENSORLG00020022507	rbm42	100	59.016	Oryzias_latipes_hni
ENSPKIG00000015165	rbm42	100	70.361	ENSORLG00015000659	rbm42	100	71.154	Oryzias_latipes_hsok
ENSPKIG00000015165	rbm42	60	76.923	ENSOMEG00000014332	rbm42	91	76.923	Oryzias_melastigma
ENSPKIG00000015165	rbm42	74	80.000	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSPKIG00000015165	rbm42	53	58.108	ENSPMAG00000008633	rbm42	100	52.162	Petromyzon_marinus
ENSPKIG00000015165	rbm42	100	69.784	ENSPFOG00000007701	rbm42	100	71.292	Poecilia_formosa
ENSPKIG00000015165	rbm42	100	69.784	ENSPLAG00000009405	rbm42	100	71.292	Poecilia_latipinna
ENSPKIG00000015165	rbm42	100	69.544	ENSPMEG00000010375	rbm42	100	71.053	Poecilia_mexicana
ENSPKIG00000015165	rbm42	100	69.784	ENSPREG00000018102	rbm42	100	71.292	Poecilia_reticulata
ENSPKIG00000015165	rbm42	100	72.705	ENSPNYG00000014460	rbm42	100	73.621	Pundamilia_nyererei
ENSPKIG00000015165	rbm42	100	81.775	ENSPNAG00000009961	rbm42	100	81.775	Pygocentrus_nattereri
ENSPKIG00000015165	rbm42	100	85.372	ENSSFOG00015019227	rbm42	100	86.364	Scleropages_formosus
ENSPKIG00000015165	rbm42	100	72.356	ENSSMAG00000011935	rbm42	100	71.223	Scophthalmus_maximus
ENSPKIG00000015165	rbm42	100	73.012	ENSSDUG00000004033	rbm42	100	74.580	Seriola_dumerili
ENSPKIG00000015165	rbm42	100	66.748	ENSSLDG00000009918	rbm42	100	97.183	Seriola_lalandi_dorsalis
ENSPKIG00000015165	rbm42	100	72.771	ENSSPAG00000019871	rbm42	100	74.038	Stegastes_partitus
ENSPKIG00000015165	rbm42	100	68.675	ENSTRUG00000024586	-	76	68.523	Takifugu_rubripes
ENSPKIG00000015165	rbm42	99	60.850	ENSTNIG00000011669	rbm42	100	60.403	Tetraodon_nigroviridis
ENSPKIG00000015165	rbm42	100	55.682	ENSXETG00000017599	rbm42	100	58.756	Xenopus_tropicalis
ENSPKIG00000015165	rbm42	100	69.784	ENSXMAG00000012827	rbm42	100	71.292	Xiphophorus_maculatus