EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000016889 (Gene tree)
Gene ID: 111859247
Gene Symbol: xrn2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 35122 bases
Position: chrPGUA01000374.1:279662-314783
Accession: 111859247
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000039658	XRN_N	PF03159.18	4.4e-101	1	1
ENSPKIP00000039594	XRN_N	PF03159.18	4.5e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000020669	-	6857	-	ENSPKIP00000039658	969 (aa)	-	-
ENSPKIT00000020604	-	6525	-	ENSPKIP00000039594	989 (aa)	XP_023697528	UPI000CD6278E

Gene Model

Click here to download ENSPKIG00000016889's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03008	Ribosome biogenesis in eukaryotes	KEGG
pki03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000016889's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000016889	xrn2	100	70.727	ENSG00000088930	XRN2	100	70.727	Homo_sapiens
ENSPKIG00000016889	xrn2	95	80.890	ENSAPOG00000009818	xrn2	100	78.469	Acanthochromis_polyacanthus
ENSPKIG00000016889	xrn2	100	70.829	ENSAMEG00000012581	XRN2	100	70.829	Ailuropoda_melanoleuca
ENSPKIG00000016889	xrn2	90	76.543	ENSACIG00000015047	xrn2	95	81.559	Amphilophus_citrinellus
ENSPKIG00000016889	xrn2	95	81.304	ENSAOCG00000023632	xrn2	100	78.754	Amphiprion_ocellaris
ENSPKIG00000016889	xrn2	95	81.216	ENSAPEG00000014871	xrn2	100	78.776	Amphiprion_percula
ENSPKIG00000016889	xrn2	94	81.897	ENSATEG00000001273	xrn2	94	82.210	Anabas_testudineus
ENSPKIG00000016889	xrn2	98	71.744	ENSAPLG00000013869	XRN2	100	71.744	Anas_platyrhynchos
ENSPKIG00000016889	xrn2	100	71.138	ENSACAG00000005565	XRN2	100	70.630	Anolis_carolinensis
ENSPKIG00000016889	xrn2	100	70.829	ENSANAG00000020126	XRN2	100	70.829	Aotus_nancymaae
ENSPKIG00000016889	xrn2	89	79.745	ENSACLG00000010522	xrn2	97	79.745	Astatotilapia_calliptera
ENSPKIG00000016889	xrn2	100	79.756	ENSAMXG00000018301	xrn2	100	79.532	Astyanax_mexicanus
ENSPKIG00000016889	xrn2	100	70.317	ENSBTAG00000011304	XRN2	100	70.317	Bos_taurus
ENSPKIG00000016889	xrn2	86	54.439	WBGene00006964	xrn-2	87	54.439	Caenorhabditis_elegans
ENSPKIG00000016889	xrn2	100	70.829	ENSCJAG00000005611	XRN2	100	70.829	Callithrix_jacchus
ENSPKIG00000016889	xrn2	100	70.829	ENSCAFG00000005185	XRN2	100	70.829	Canis_familiaris
ENSPKIG00000016889	xrn2	100	70.829	ENSCAFG00020027479	XRN2	100	70.829	Canis_lupus_dingo
ENSPKIG00000016889	xrn2	100	70.317	ENSCHIG00000006921	XRN2	100	70.317	Capra_hircus
ENSPKIG00000016889	xrn2	100	70.624	ENSTSYG00000008315	XRN2	100	70.624	Carlito_syrichta
ENSPKIG00000016889	xrn2	97	60.294	ENSCAPG00000010773	XRN2	99	60.189	Cavia_aperea
ENSPKIG00000016889	xrn2	100	71.034	ENSCPOG00000009407	XRN2	100	71.034	Cavia_porcellus
ENSPKIG00000016889	xrn2	100	70.624	ENSCATG00000040350	XRN2	100	70.624	Cercocebus_atys
ENSPKIG00000016889	xrn2	100	70.931	ENSCLAG00000013419	XRN2	100	70.931	Chinchilla_lanigera
ENSPKIG00000016889	xrn2	100	70.624	ENSCSAG00000011094	XRN2	100	70.624	Chlorocebus_sabaeus
ENSPKIG00000016889	xrn2	67	89.785	ENSCHOG00000013404	XRN2	63	89.785	Choloepus_hoffmanni
ENSPKIG00000016889	xrn2	100	72.857	ENSCPBG00000023533	XRN2	100	72.449	Chrysemys_picta_bellii
ENSPKIG00000016889	xrn2	85	60.592	ENSCING00000022336	-	100	60.947	Ciona_intestinalis
ENSPKIG00000016889	xrn2	90	57.111	ENSCSAVG00000011217	-	95	70.602	Ciona_savignyi
ENSPKIG00000016889	xrn2	100	70.624	ENSCANG00000040240	XRN2	100	70.624	Colobus_angolensis_palliatus
ENSPKIG00000016889	xrn2	94	73.102	ENSCGRG00001010676	Xrn2	94	74.915	Cricetulus_griseus_chok1gshd
ENSPKIG00000016889	xrn2	97	70.199	ENSCGRG00000006378	Xrn2	99	70.409	Cricetulus_griseus_crigri
ENSPKIG00000016889	xrn2	54	75.192	ENSCSEG00000005628	xrn2	100	75.000	Cynoglossus_semilaevis
ENSPKIG00000016889	xrn2	89	78.809	ENSCVAG00000018999	xrn2	98	86.042	Cyprinodon_variegatus
ENSPKIG00000016889	xrn2	100	79.247	ENSDARG00000101900	xrn2	96	88.145	Danio_rerio
ENSPKIG00000016889	xrn2	100	71.034	ENSDNOG00000001895	XRN2	100	71.034	Dasypus_novemcinctus
ENSPKIG00000016889	xrn2	100	69.601	ENSDORG00000005434	Xrn2	100	69.498	Dipodomys_ordii
ENSPKIG00000016889	xrn2	86	54.862	FBgn0031868	Rat1	92	54.100	Drosophila_melanogaster
ENSPKIG00000016889	xrn2	91	80.535	ENSETEG00000001740	XRN2	92	80.535	Echinops_telfairi
ENSPKIG00000016889	xrn2	84	70.717	ENSEBUG00000016136	xrn2	100	70.717	Eptatretus_burgeri
ENSPKIG00000016889	xrn2	100	70.697	ENSEASG00005002484	XRN2	100	70.697	Equus_asinus_asinus
ENSPKIG00000016889	xrn2	94	88.462	ENSECAG00000018988	XRN2	96	88.462	Equus_caballus
ENSPKIG00000016889	xrn2	66	88.000	ENSEEUG00000009265	XRN2	67	88.000	Erinaceus_europaeus
ENSPKIG00000016889	xrn2	100	78.169	ENSELUG00000000552	xrn2	100	79.049	Esox_lucius
ENSPKIG00000016889	xrn2	100	70.727	ENSFCAG00000007970	XRN2	100	70.727	Felis_catus
ENSPKIG00000016889	xrn2	100	71.967	ENSFALG00000004508	XRN2	100	71.750	Ficedula_albicollis
ENSPKIG00000016889	xrn2	100	71.136	ENSFDAG00000016311	XRN2	100	71.136	Fukomys_damarensis
ENSPKIG00000016889	xrn2	54	79.310	ENSFHEG00000013039	xrn2	98	79.310	Fundulus_heteroclitus
ENSPKIG00000016889	xrn2	85	79.567	ENSGMOG00000013436	xrn2	100	79.567	Gadus_morhua
ENSPKIG00000016889	xrn2	100	71.414	ENSGALG00000008372	XRN2	100	70.202	Gallus_gallus
ENSPKIG00000016889	xrn2	89	81.808	ENSGAFG00000014284	xrn2	98	81.998	Gambusia_affinis
ENSPKIG00000016889	xrn2	86	80.884	ENSGACG00000011870	xrn2	96	86.346	Gasterosteus_aculeatus
ENSPKIG00000016889	xrn2	100	72.857	ENSGAGG00000004884	XRN2	100	72.551	Gopherus_agassizii
ENSPKIG00000016889	xrn2	100	70.624	ENSGGOG00000013738	XRN2	100	70.624	Gorilla_gorilla
ENSPKIG00000016889	xrn2	54	80.460	ENSHBUG00000005077	xrn2	94	80.460	Haplochromis_burtoni
ENSPKIG00000016889	xrn2	100	70.010	ENSHGLG00000014831	XRN2	100	69.908	Heterocephalus_glaber_female
ENSPKIG00000016889	xrn2	100	70.010	ENSHGLG00100013130	XRN2	100	69.908	Heterocephalus_glaber_male
ENSPKIG00000016889	xrn2	99	75.051	ENSHCOG00000011994	xrn2	99	74.797	Hippocampus_comes
ENSPKIG00000016889	xrn2	100	78.354	ENSIPUG00000006639	xrn2	100	77.241	Ictalurus_punctatus
ENSPKIG00000016889	xrn2	100	71.034	ENSSTOG00000000589	XRN2	100	71.034	Ictidomys_tridecemlineatus
ENSPKIG00000016889	xrn2	100	71.341	ENSJJAG00000022128	Xrn2	100	71.136	Jaculus_jaculus
ENSPKIG00000016889	xrn2	54	85.413	ENSLBEG00000010041	xrn2	100	85.413	Labrus_bergylta
ENSPKIG00000016889	xrn2	93	72.149	ENSLACG00000008307	XRN2	97	76.296	Latimeria_chalumnae
ENSPKIG00000016889	xrn2	99	75.540	ENSLOCG00000016874	xrn2	93	84.887	Lepisosteus_oculatus
ENSPKIG00000016889	xrn2	100	70.931	ENSLAFG00000014624	XRN2	100	70.829	Loxodonta_africana
ENSPKIG00000016889	xrn2	100	70.624	ENSMFAG00000038122	XRN2	100	70.624	Macaca_fascicularis
ENSPKIG00000016889	xrn2	100	70.624	ENSMMUG00000011405	XRN2	100	70.624	Macaca_mulatta
ENSPKIG00000016889	xrn2	100	70.522	ENSMNEG00000040626	XRN2	100	70.522	Macaca_nemestrina
ENSPKIG00000016889	xrn2	100	70.522	ENSMLEG00000041897	XRN2	100	70.522	Mandrillus_leucophaeus
ENSPKIG00000016889	xrn2	94	82.096	ENSMAMG00000008633	xrn2	93	82.301	Mastacembelus_armatus
ENSPKIG00000016889	xrn2	89	81.366	ENSMZEG00005022362	xrn2	97	81.366	Maylandia_zebra
ENSPKIG00000016889	xrn2	98	70.924	ENSMGAG00000003196	XRN2	94	73.546	Meleagris_gallopavo
ENSPKIG00000016889	xrn2	100	71.341	ENSMAUG00000021842	Xrn2	100	71.341	Mesocricetus_auratus
ENSPKIG00000016889	xrn2	100	70.492	ENSMICG00000008126	XRN2	100	70.492	Microcebus_murinus
ENSPKIG00000016889	xrn2	100	70.902	ENSMOCG00000012588	Xrn2	100	71.004	Microtus_ochrogaster
ENSPKIG00000016889	xrn2	89	82.118	ENSMMOG00000017576	xrn2	96	83.779	Mola_mola
ENSPKIG00000016889	xrn2	100	72.177	ENSMODG00000006163	XRN2	100	71.240	Monodelphis_domestica
ENSPKIG00000016889	xrn2	95	82.971	ENSMALG00000011355	xrn2	95	86.756	Monopterus_albus
ENSPKIG00000016889	xrn2	100	71.107	MGP_CAROLIEiJ_G0024400	Xrn2	100	71.034	Mus_caroli
ENSPKIG00000016889	xrn2	100	71.209	ENSMUSG00000027433	Xrn2	100	71.136	Mus_musculus
ENSPKIG00000016889	xrn2	100	71.107	MGP_PahariEiJ_G0025843	Xrn2	100	71.034	Mus_pahari
ENSPKIG00000016889	xrn2	100	71.209	MGP_SPRETEiJ_G0025318	Xrn2	100	71.136	Mus_spretus
ENSPKIG00000016889	xrn2	100	69.718	ENSMPUG00000001198	XRN2	93	69.517	Mustela_putorius_furo
ENSPKIG00000016889	xrn2	100	70.594	ENSMLUG00000001536	XRN2	100	70.594	Myotis_lucifugus
ENSPKIG00000016889	xrn2	100	71.341	ENSNGAG00000018138	Xrn2	100	71.341	Nannospalax_galili
ENSPKIG00000016889	xrn2	89	81.713	ENSNBRG00000008062	xrn2	97	81.713	Neolamprologus_brichardi
ENSPKIG00000016889	xrn2	100	70.624	ENSNLEG00000009991	XRN2	100	70.624	Nomascus_leucogenys
ENSPKIG00000016889	xrn2	65	84.444	ENSMEUG00000008622	-	53	84.444	Notamacropus_eugenii
ENSPKIG00000016889	xrn2	75	74.737	ENSOPRG00000001397	-	63	74.737	Ochotona_princeps
ENSPKIG00000016889	xrn2	100	70.931	ENSODEG00000010745	-	100	70.931	Octodon_degus
ENSPKIG00000016889	xrn2	98	64.984	ENSODEG00000000860	-	93	68.245	Octodon_degus
ENSPKIG00000016889	xrn2	100	75.887	ENSONIG00000018720	xrn2	100	74.949	Oreochromis_niloticus
ENSPKIG00000016889	xrn2	100	71.516	ENSOANG00000015673	XRN2	100	71.311	Ornithorhynchus_anatinus
ENSPKIG00000016889	xrn2	100	70.829	ENSOCUG00000013468	XRN2	100	70.348	Oryctolagus_cuniculus
ENSPKIG00000016889	xrn2	98	77.386	ENSORLG00000017213	xrn2	97	82.639	Oryzias_latipes
ENSPKIG00000016889	xrn2	98	76.939	ENSORLG00020001824	xrn2	100	76.962	Oryzias_latipes_hni
ENSPKIG00000016889	xrn2	98	76.629	ENSORLG00015019747	xrn2	100	76.656	Oryzias_latipes_hsok
ENSPKIG00000016889	xrn2	96	78.480	ENSOMEG00000019820	xrn2	100	76.447	Oryzias_melastigma
ENSPKIG00000016889	xrn2	100	70.480	ENSOGAG00000001068	XRN2	100	70.480	Otolemur_garnettii
ENSPKIG00000016889	xrn2	97	69.821	ENSOARG00000004443	XRN2	99	69.821	Ovis_aries
ENSPKIG00000016889	xrn2	100	70.624	ENSPPAG00000033549	XRN2	100	70.624	Pan_paniscus
ENSPKIG00000016889	xrn2	100	70.727	ENSPPRG00000008732	XRN2	100	70.727	Panthera_pardus
ENSPKIG00000016889	xrn2	97	70.347	ENSPTIG00000015683	XRN2	97	70.347	Panthera_tigris_altaica
ENSPKIG00000016889	xrn2	100	70.624	ENSPTRG00000013308	XRN2	100	70.624	Pan_troglodytes
ENSPKIG00000016889	xrn2	100	70.624	ENSPANG00000018088	XRN2	100	70.624	Papio_anubis
ENSPKIG00000016889	xrn2	80	77.220	ENSPSIG00000014666	XRN2	99	77.220	Pelodiscus_sinensis
ENSPKIG00000016889	xrn2	100	70.727	ENSPEMG00000000111	Xrn2	100	70.727	Peromyscus_maniculatus_bairdii
ENSPKIG00000016889	xrn2	100	76.489	ENSPFOG00000004182	xrn2	99	76.181	Poecilia_formosa
ENSPKIG00000016889	xrn2	89	82.039	ENSPLAG00000007351	xrn2	97	82.039	Poecilia_latipinna
ENSPKIG00000016889	xrn2	94	75.326	ENSPMEG00000011798	xrn2	99	75.000	Poecilia_mexicana
ENSPKIG00000016889	xrn2	90	81.672	ENSPREG00000012452	xrn2	100	80.246	Poecilia_reticulata
ENSPKIG00000016889	xrn2	100	70.317	ENSPPYG00000010755	XRN2	100	70.317	Pongo_abelii
ENSPKIG00000016889	xrn2	100	66.633	ENSPCAG00000011191	XRN2	100	66.327	Procavia_capensis
ENSPKIG00000016889	xrn2	100	64.857	ENSPCOG00000016468	XRN2	100	64.857	Propithecus_coquereli
ENSPKIG00000016889	xrn2	93	65.187	ENSPVAG00000004596	XRN2	93	65.187	Pteropus_vampyrus
ENSPKIG00000016889	xrn2	89	79.745	ENSPNYG00000001765	xrn2	97	79.745	Pundamilia_nyererei
ENSPKIG00000016889	xrn2	100	79.716	ENSPNAG00000010956	xrn2	99	79.310	Pygocentrus_nattereri
ENSPKIG00000016889	xrn2	100	71.546	ENSRNOG00000011785	Xrn2	100	71.677	Rattus_norvegicus
ENSPKIG00000016889	xrn2	85	76.145	ENSRBIG00000036193	XRN2	100	76.145	Rhinopithecus_bieti
ENSPKIG00000016889	xrn2	100	70.624	ENSRROG00000044400	XRN2	90	70.624	Rhinopithecus_roxellana
ENSPKIG00000016889	xrn2	67	52.546	YOR048C	RAT1	63	53.382	Saccharomyces_cerevisiae
ENSPKIG00000016889	xrn2	100	70.829	ENSSBOG00000021014	XRN2	100	70.829	Saimiri_boliviensis_boliviensis
ENSPKIG00000016889	xrn2	100	84.065	ENSSFOG00015001091	xrn2	100	83.759	Scleropages_formosus
ENSPKIG00000016889	xrn2	90	83.200	ENSSMAG00000007834	xrn2	91	81.808	Scophthalmus_maximus
ENSPKIG00000016889	xrn2	95	78.742	ENSSDUG00000012802	xrn2	99	82.265	Seriola_dumerili
ENSPKIG00000016889	xrn2	92	83.015	ENSSLDG00000021273	xrn2	99	83.015	Seriola_lalandi_dorsalis
ENSPKIG00000016889	xrn2	68	88.000	ENSSARG00000005859	-	54	88.000	Sorex_araneus
ENSPKIG00000016889	xrn2	96	70.714	ENSSPUG00000005485	XRN2	90	73.690	Sphenodon_punctatus
ENSPKIG00000016889	xrn2	100	77.766	ENSSPAG00000016027	xrn2	99	77.971	Stegastes_partitus
ENSPKIG00000016889	xrn2	100	69.601	ENSSSCG00000007109	XRN2	100	69.601	Sus_scrofa
ENSPKIG00000016889	xrn2	94	72.432	ENSTGUG00000007535	XRN2	100	69.765	Taeniopygia_guttata
ENSPKIG00000016889	xrn2	100	75.252	ENSTRUG00000015489	xrn2	100	75.277	Takifugu_rubripes
ENSPKIG00000016889	xrn2	100	74.082	ENSTNIG00000010712	xrn2	100	74.512	Tetraodon_nigroviridis
ENSPKIG00000016889	xrn2	100	70.420	ENSTBEG00000004119	XRN2	100	70.420	Tupaia_belangeri
ENSPKIG00000016889	xrn2	93	77.817	ENSTTRG00000009087	XRN2	93	77.817	Tursiops_truncatus
ENSPKIG00000016889	xrn2	100	70.829	ENSUAMG00000024634	XRN2	99	78.775	Ursus_americanus
ENSPKIG00000016889	xrn2	97	70.242	ENSUMAG00000004012	XRN2	95	70.242	Ursus_maritimus
ENSPKIG00000016889	xrn2	80	83.172	ENSVPAG00000010694	XRN2	83	83.172	Vicugna_pacos
ENSPKIG00000016889	xrn2	100	70.829	ENSVVUG00000012178	XRN2	100	70.829	Vulpes_vulpes
ENSPKIG00000016889	xrn2	100	70.787	ENSXETG00000023501	xrn2	100	70.540	Xenopus_tropicalis
ENSPKIG00000016889	xrn2	100	76.181	ENSXMAG00000000242	xrn2	92	84.672	Xiphophorus_maculatus