EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000017164 (Gene tree)
Gene ID: 111848350
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 4198 bases
Position: chrPGUA01000019.1:3470129-3474326
Accession: 111848350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000040047	TUDOR	PF00567.24	8.3e-07	1	1
ENSPKIP00000040047	SMN	PF06003.12	3.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000021065	-	2274	-	ENSPKIP00000040047	237 (aa)	XP_023676025	UPI000CD61425

Gene Model

Click here to download ENSPKIG00000017164's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000017164's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000017164	smndc1	100	81.092	ENSG00000119953	SMNDC1	100	81.092	Homo_sapiens
ENSPKIG00000017164	smndc1	100	80.252	ENSAPOG00000021772	smndc1	100	80.252	Acanthochromis_polyacanthus
ENSPKIG00000017164	smndc1	100	80.672	ENSAMEG00000005251	SMNDC1	100	80.672	Ailuropoda_melanoleuca
ENSPKIG00000017164	smndc1	100	80.252	ENSACIG00000004819	smndc1	100	80.252	Amphilophus_citrinellus
ENSPKIG00000017164	smndc1	100	80.252	ENSAOCG00000017869	smndc1	100	80.252	Amphiprion_ocellaris
ENSPKIG00000017164	smndc1	100	80.252	ENSAPEG00000007752	smndc1	100	80.252	Amphiprion_percula
ENSPKIG00000017164	smndc1	100	80.252	ENSATEG00000006830	smndc1	100	80.252	Anabas_testudineus
ENSPKIG00000017164	smndc1	83	80.808	ENSAPLG00000004322	SMNDC1	100	80.808	Anas_platyrhynchos
ENSPKIG00000017164	smndc1	100	79.832	ENSACAG00000005983	SMNDC1	100	79.832	Anolis_carolinensis
ENSPKIG00000017164	smndc1	100	80.672	ENSANAG00000032875	SMNDC1	100	80.672	Aotus_nancymaae
ENSPKIG00000017164	smndc1	100	80.833	ENSACLG00000016360	smndc1	100	79.412	Astatotilapia_calliptera
ENSPKIG00000017164	smndc1	100	79.325	ENSAMXG00000020310	smndc1	100	79.325	Astyanax_mexicanus
ENSPKIG00000017164	smndc1	100	80.252	ENSBTAG00000000551	SMNDC1	100	80.252	Bos_taurus
ENSPKIG00000017164	smndc1	100	80.672	ENSCJAG00000018624	SMNDC1	100	80.672	Callithrix_jacchus
ENSPKIG00000017164	smndc1	100	80.672	ENSCAFG00000010720	SMNDC1	100	80.672	Canis_familiaris
ENSPKIG00000017164	smndc1	100	80.672	ENSCAFG00020011913	SMNDC1	100	80.672	Canis_lupus_dingo
ENSPKIG00000017164	smndc1	100	80.252	ENSCHIG00000010604	SMNDC1	100	80.252	Capra_hircus
ENSPKIG00000017164	smndc1	100	80.252	ENSTSYG00000026454	SMNDC1	100	80.252	Carlito_syrichta
ENSPKIG00000017164	smndc1	100	67.083	ENSCAPG00000009132	SMNDC1	100	78.109	Cavia_aperea
ENSPKIG00000017164	smndc1	100	81.092	ENSCPOG00000031666	SMNDC1	100	81.092	Cavia_porcellus
ENSPKIG00000017164	smndc1	100	80.672	ENSCCAG00000021793	SMNDC1	100	80.672	Cebus_capucinus
ENSPKIG00000017164	smndc1	100	80.252	ENSCATG00000035910	SMNDC1	100	80.252	Cercocebus_atys
ENSPKIG00000017164	smndc1	100	80.672	ENSCLAG00000002838	SMNDC1	100	80.672	Chinchilla_lanigera
ENSPKIG00000017164	smndc1	100	80.672	ENSCSAG00000005169	SMNDC1	100	80.672	Chlorocebus_sabaeus
ENSPKIG00000017164	smndc1	81	76.684	ENSCHOG00000002936	SMNDC1	100	76.684	Choloepus_hoffmanni
ENSPKIG00000017164	smndc1	100	81.092	ENSCPBG00000012837	SMNDC1	100	81.092	Chrysemys_picta_bellii
ENSPKIG00000017164	smndc1	100	80.672	ENSCANG00000031720	-	100	80.672	Colobus_angolensis_palliatus
ENSPKIG00000017164	smndc1	100	74.370	ENSCANG00000034620	-	100	74.370	Colobus_angolensis_palliatus
ENSPKIG00000017164	smndc1	100	62.869	ENSCANG00000036994	-	100	62.869	Colobus_angolensis_palliatus
ENSPKIG00000017164	smndc1	100	80.672	ENSCGRG00001012973	Smndc1	100	80.672	Cricetulus_griseus_chok1gshd
ENSPKIG00000017164	smndc1	100	80.672	ENSCGRG00000012396	Smndc1	100	80.672	Cricetulus_griseus_crigri
ENSPKIG00000017164	smndc1	100	78.903	ENSCSEG00000015621	smndc1	100	78.903	Cynoglossus_semilaevis
ENSPKIG00000017164	smndc1	100	81.092	ENSCVAG00000020432	smndc1	100	81.092	Cyprinodon_variegatus
ENSPKIG00000017164	smndc1	100	78.481	ENSDARG00000056235	smndc1	100	78.481	Danio_rerio
ENSPKIG00000017164	smndc1	100	80.672	ENSDNOG00000016387	SMNDC1	83	80.672	Dasypus_novemcinctus
ENSPKIG00000017164	smndc1	100	80.672	ENSDORG00000023715	Smndc1	100	80.672	Dipodomys_ordii
ENSPKIG00000017164	smndc1	97	41.667	FBgn0039977	CG17454	98	43.254	Drosophila_melanogaster
ENSPKIG00000017164	smndc1	100	68.880	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSPKIG00000017164	smndc1	100	80.672	ENSEASG00005014930	SMNDC1	100	80.672	Equus_asinus_asinus
ENSPKIG00000017164	smndc1	100	80.672	ENSECAG00000029973	SMNDC1	100	80.672	Equus_caballus
ENSPKIG00000017164	smndc1	60	88.542	ENSEEUG00000013407	-	100	57.576	Erinaceus_europaeus
ENSPKIG00000017164	smndc1	100	81.013	ENSELUG00000000227	smndc1	100	81.013	Esox_lucius
ENSPKIG00000017164	smndc1	100	80.672	ENSFCAG00000027353	SMNDC1	100	80.672	Felis_catus
ENSPKIG00000017164	smndc1	100	80.672	ENSFALG00000002306	SMNDC1	100	80.672	Ficedula_albicollis
ENSPKIG00000017164	smndc1	100	81.513	ENSFDAG00000006468	SMNDC1	100	81.513	Fukomys_damarensis
ENSPKIG00000017164	smndc1	100	81.933	ENSFHEG00000020150	smndc1	100	81.933	Fundulus_heteroclitus
ENSPKIG00000017164	smndc1	100	80.169	ENSGMOG00000016585	smndc1	100	80.169	Gadus_morhua
ENSPKIG00000017164	smndc1	100	80.672	ENSGALG00000008561	SMNDC1	100	80.672	Gallus_gallus
ENSPKIG00000017164	smndc1	100	81.092	ENSGAFG00000011582	smndc1	100	81.092	Gambusia_affinis
ENSPKIG00000017164	smndc1	100	81.092	ENSGACG00000009468	smndc1	100	81.092	Gasterosteus_aculeatus
ENSPKIG00000017164	smndc1	100	81.092	ENSGAGG00000024547	SMNDC1	100	81.092	Gopherus_agassizii
ENSPKIG00000017164	smndc1	100	80.672	ENSGGOG00000010071	SMNDC1	100	80.672	Gorilla_gorilla
ENSPKIG00000017164	smndc1	100	80.833	ENSHBUG00000017596	smndc1	100	79.412	Haplochromis_burtoni
ENSPKIG00000017164	smndc1	100	81.513	ENSHGLG00000013390	-	100	81.513	Heterocephalus_glaber_female
ENSPKIG00000017164	smndc1	100	59.259	ENSHGLG00000001157	-	100	57.202	Heterocephalus_glaber_female
ENSPKIG00000017164	smndc1	100	65.164	ENSHGLG00100004278	-	100	63.525	Heterocephalus_glaber_male
ENSPKIG00000017164	smndc1	100	81.513	ENSHGLG00100004814	-	100	81.513	Heterocephalus_glaber_male
ENSPKIG00000017164	smndc1	100	79.916	ENSHCOG00000000783	smndc1	100	79.916	Hippocampus_comes
ENSPKIG00000017164	smndc1	100	80.753	ENSIPUG00000004217	smndc1	100	79.325	Ictalurus_punctatus
ENSPKIG00000017164	smndc1	100	80.252	ENSSTOG00000006088	SMNDC1	100	80.252	Ictidomys_tridecemlineatus
ENSPKIG00000017164	smndc1	100	81.092	ENSJJAG00000019974	Smndc1	100	81.092	Jaculus_jaculus
ENSPKIG00000017164	smndc1	100	79.832	ENSKMAG00000020134	smndc1	100	79.832	Kryptolebias_marmoratus
ENSPKIG00000017164	smndc1	100	78.903	ENSLBEG00000004598	smndc1	100	78.903	Labrus_bergylta
ENSPKIG00000017164	smndc1	100	81.513	ENSLACG00000007784	SMNDC1	100	81.513	Latimeria_chalumnae
ENSPKIG00000017164	smndc1	100	89.451	ENSLOCG00000012355	smndc1	100	89.451	Lepisosteus_oculatus
ENSPKIG00000017164	smndc1	100	80.252	ENSLAFG00000014353	SMNDC1	100	80.252	Loxodonta_africana
ENSPKIG00000017164	smndc1	100	66.245	ENSMFAG00000038381	-	100	65.823	Macaca_fascicularis
ENSPKIG00000017164	smndc1	100	80.672	ENSMFAG00000002433	-	100	80.672	Macaca_fascicularis
ENSPKIG00000017164	smndc1	100	80.672	ENSMMUG00000007775	SMNDC1	100	80.672	Macaca_mulatta
ENSPKIG00000017164	smndc1	100	66.245	ENSMMUG00000045875	-	100	65.823	Macaca_mulatta
ENSPKIG00000017164	smndc1	100	80.672	ENSMNEG00000042963	-	100	80.672	Macaca_nemestrina
ENSPKIG00000017164	smndc1	100	71.429	ENSMNEG00000033853	-	100	71.429	Macaca_nemestrina
ENSPKIG00000017164	smndc1	100	76.151	ENSMLEG00000040236	SMNDC1	100	75.732	Mandrillus_leucophaeus
ENSPKIG00000017164	smndc1	89	76.995	ENSMAMG00000018233	smndc1	87	76.995	Mastacembelus_armatus
ENSPKIG00000017164	smndc1	100	80.833	ENSMZEG00005027510	smndc1	100	79.412	Maylandia_zebra
ENSPKIG00000017164	smndc1	97	73.478	ENSMGAG00000010777	SMNDC1	84	81.500	Meleagris_gallopavo
ENSPKIG00000017164	smndc1	99	66.525	ENSMAUG00000005459	-	93	66.527	Mesocricetus_auratus
ENSPKIG00000017164	smndc1	100	80.672	ENSMAUG00000012243	-	100	80.672	Mesocricetus_auratus
ENSPKIG00000017164	smndc1	100	80.672	ENSMICG00000027336	-	100	80.672	Microcebus_murinus
ENSPKIG00000017164	smndc1	100	70.042	ENSMICG00000031640	-	100	70.042	Microcebus_murinus
ENSPKIG00000017164	smndc1	100	80.252	ENSMOCG00000002458	Smndc1	100	80.252	Microtus_ochrogaster
ENSPKIG00000017164	smndc1	100	80.252	ENSMMOG00000008856	smndc1	100	80.252	Mola_mola
ENSPKIG00000017164	smndc1	100	80.672	ENSMODG00000010542	SMNDC1	100	80.672	Monodelphis_domestica
ENSPKIG00000017164	smndc1	100	79.832	ENSMALG00000017598	smndc1	100	79.832	Monopterus_albus
ENSPKIG00000017164	smndc1	100	81.092	MGP_CAROLIEiJ_G0023072	Smndc1	100	81.092	Mus_caroli
ENSPKIG00000017164	smndc1	100	80.672	ENSMUSG00000025024	Smndc1	100	80.672	Mus_musculus
ENSPKIG00000017164	smndc1	100	80.252	MGP_PahariEiJ_G0014560	Smndc1	100	80.252	Mus_pahari
ENSPKIG00000017164	smndc1	100	80.672	MGP_SPRETEiJ_G0023993	Smndc1	100	80.672	Mus_spretus
ENSPKIG00000017164	smndc1	100	80.672	ENSMPUG00000002089	SMNDC1	100	80.672	Mustela_putorius_furo
ENSPKIG00000017164	smndc1	100	79.832	ENSMLUG00000016007	SMNDC1	100	79.832	Myotis_lucifugus
ENSPKIG00000017164	smndc1	100	79.832	ENSNGAG00000006833	Smndc1	100	79.832	Nannospalax_galili
ENSPKIG00000017164	smndc1	100	80.833	ENSNBRG00000017089	smndc1	100	79.412	Neolamprologus_brichardi
ENSPKIG00000017164	smndc1	100	80.672	ENSNLEG00000015471	SMNDC1	100	80.672	Nomascus_leucogenys
ENSPKIG00000017164	smndc1	70	60.241	ENSMEUG00000010120	-	82	60.000	Notamacropus_eugenii
ENSPKIG00000017164	smndc1	100	81.092	ENSOPRG00000015348	SMNDC1	100	81.092	Ochotona_princeps
ENSPKIG00000017164	smndc1	100	58.228	ENSODEG00000007594	-	100	56.962	Octodon_degus
ENSPKIG00000017164	smndc1	100	80.833	ENSONIG00000000434	smndc1	100	79.412	Oreochromis_niloticus
ENSPKIG00000017164	smndc1	100	81.513	ENSOANG00000001598	SMNDC1	100	81.513	Ornithorhynchus_anatinus
ENSPKIG00000017164	smndc1	100	80.672	ENSOCUG00000008145	-	100	80.672	Oryctolagus_cuniculus
ENSPKIG00000017164	smndc1	100	60.924	ENSOCUG00000012274	-	100	62.605	Oryctolagus_cuniculus
ENSPKIG00000017164	smndc1	100	78.992	ENSORLG00000005934	smndc1	95	78.992	Oryzias_latipes
ENSPKIG00000017164	smndc1	100	78.992	ENSORLG00020008796	smndc1	95	78.992	Oryzias_latipes_hni
ENSPKIG00000017164	smndc1	100	78.992	ENSORLG00015013666	smndc1	100	78.992	Oryzias_latipes_hsok
ENSPKIG00000017164	smndc1	100	80.169	ENSOMEG00000007590	smndc1	100	80.169	Oryzias_melastigma
ENSPKIG00000017164	smndc1	100	80.252	ENSOGAG00000000571	SMNDC1	100	80.252	Otolemur_garnettii
ENSPKIG00000017164	smndc1	100	80.252	ENSOARG00000009500	SMNDC1	100	80.252	Ovis_aries
ENSPKIG00000017164	smndc1	100	80.672	ENSPPAG00000027815	SMNDC1	100	80.672	Pan_paniscus
ENSPKIG00000017164	smndc1	100	80.672	ENSPPRG00000013749	SMNDC1	100	80.672	Panthera_pardus
ENSPKIG00000017164	smndc1	100	80.672	ENSPTIG00000011451	SMNDC1	100	80.672	Panthera_tigris_altaica
ENSPKIG00000017164	smndc1	100	80.672	ENSPTRG00000002937	SMNDC1	100	80.672	Pan_troglodytes
ENSPKIG00000017164	smndc1	100	80.672	ENSPANG00000020805	-	100	80.672	Papio_anubis
ENSPKIG00000017164	smndc1	100	76.371	ENSPANG00000031346	-	100	76.371	Papio_anubis
ENSPKIG00000017164	smndc1	100	81.513	ENSPSIG00000012257	SMNDC1	100	81.513	Pelodiscus_sinensis
ENSPKIG00000017164	smndc1	100	78.059	ENSPMGG00000015651	smndc1	100	78.059	Periophthalmus_magnuspinnatus
ENSPKIG00000017164	smndc1	100	80.672	ENSPEMG00000022058	Smndc1	100	80.672	Peromyscus_maniculatus_bairdii
ENSPKIG00000017164	smndc1	100	66.393	ENSPMAG00000007705	smndc1	100	65.560	Petromyzon_marinus
ENSPKIG00000017164	smndc1	100	80.672	ENSPCIG00000018419	SMNDC1	100	80.672	Phascolarctos_cinereus
ENSPKIG00000017164	smndc1	97	59.389	ENSPCIG00000009693	-	100	59.389	Phascolarctos_cinereus
ENSPKIG00000017164	smndc1	100	81.092	ENSPFOG00000017113	smndc1	100	81.092	Poecilia_formosa
ENSPKIG00000017164	smndc1	100	81.092	ENSPLAG00000010372	smndc1	100	81.092	Poecilia_latipinna
ENSPKIG00000017164	smndc1	100	81.513	ENSPMEG00000012288	smndc1	100	81.513	Poecilia_mexicana
ENSPKIG00000017164	smndc1	100	80.672	ENSPREG00000012279	smndc1	100	80.672	Poecilia_reticulata
ENSPKIG00000017164	smndc1	100	80.672	ENSPPYG00000002643	SMNDC1	100	80.672	Pongo_abelii
ENSPKIG00000017164	smndc1	81	76.166	ENSPCAG00000016183	SMNDC1	100	76.166	Procavia_capensis
ENSPKIG00000017164	smndc1	100	80.252	ENSPCOG00000024343	SMNDC1	100	80.252	Propithecus_coquereli
ENSPKIG00000017164	smndc1	77	91.667	ENSPVAG00000004368	SMNDC1	100	64.286	Pteropus_vampyrus
ENSPKIG00000017164	smndc1	83	80.500	ENSPNYG00000024093	smndc1	86	78.788	Pundamilia_nyererei
ENSPKIG00000017164	smndc1	100	80.753	ENSPNAG00000025285	smndc1	100	79.325	Pygocentrus_nattereri
ENSPKIG00000017164	smndc1	100	81.092	ENSRNOG00000014833	Smndc1	100	81.092	Rattus_norvegicus
ENSPKIG00000017164	smndc1	100	80.252	ENSRBIG00000000224	-	100	80.252	Rhinopithecus_bieti
ENSPKIG00000017164	smndc1	100	65.401	ENSRBIG00000032452	-	100	65.401	Rhinopithecus_bieti
ENSPKIG00000017164	smndc1	100	65.823	ENSRROG00000039125	-	100	65.823	Rhinopithecus_roxellana
ENSPKIG00000017164	smndc1	100	80.672	ENSRROG00000044992	-	100	80.672	Rhinopithecus_roxellana
ENSPKIG00000017164	smndc1	100	80.672	ENSSBOG00000026789	SMNDC1	100	80.672	Saimiri_boliviensis_boliviensis
ENSPKIG00000017164	smndc1	100	80.672	ENSSHAG00000015189	SMNDC1	100	80.672	Sarcophilus_harrisii
ENSPKIG00000017164	smndc1	100	91.983	ENSSFOG00015008311	smndc1	100	91.983	Scleropages_formosus
ENSPKIG00000017164	smndc1	100	80.252	ENSSMAG00000020118	smndc1	100	80.252	Scophthalmus_maximus
ENSPKIG00000017164	smndc1	100	81.092	ENSSDUG00000015330	smndc1	100	81.092	Seriola_dumerili
ENSPKIG00000017164	smndc1	100	81.092	ENSSLDG00000017325	smndc1	100	81.092	Seriola_lalandi_dorsalis
ENSPKIG00000017164	smndc1	100	80.672	ENSSARG00000006063	SMNDC1	100	80.672	Sorex_araneus
ENSPKIG00000017164	smndc1	100	79.832	ENSSPUG00000004574	SMNDC1	100	79.832	Sphenodon_punctatus
ENSPKIG00000017164	smndc1	100	79.412	ENSSPAG00000000338	smndc1	100	79.412	Stegastes_partitus
ENSPKIG00000017164	smndc1	100	80.672	ENSSSCG00000030507	SMNDC1	100	80.672	Sus_scrofa
ENSPKIG00000017164	smndc1	100	80.672	ENSTGUG00000010599	SMNDC1	100	80.672	Taeniopygia_guttata
ENSPKIG00000017164	smndc1	100	78.661	ENSTRUG00000023281	smndc1	100	76.891	Takifugu_rubripes
ENSPKIG00000017164	smndc1	100	76.891	ENSTNIG00000013331	smndc1	100	76.891	Tetraodon_nigroviridis
ENSPKIG00000017164	smndc1	100	81.092	ENSTBEG00000014337	SMNDC1	100	81.092	Tupaia_belangeri
ENSPKIG00000017164	smndc1	100	80.672	ENSUAMG00000008142	SMNDC1	100	80.672	Ursus_americanus
ENSPKIG00000017164	smndc1	100	80.672	ENSUMAG00000023722	SMNDC1	100	80.672	Ursus_maritimus
ENSPKIG00000017164	smndc1	83	79.798	ENSVPAG00000003402	SMNDC1	100	79.798	Vicugna_pacos
ENSPKIG00000017164	smndc1	100	80.672	ENSVVUG00000007820	SMNDC1	100	80.672	Vulpes_vulpes
ENSPKIG00000017164	smndc1	57	67.164	ENSXETG00000015415	SMNDC1	94	67.164	Xenopus_tropicalis
ENSPKIG00000017164	smndc1	100	78.903	ENSXCOG00000009159	smndc1	100	78.903	Xiphophorus_couchianus
ENSPKIG00000017164	smndc1	100	79.832	ENSXMAG00000012755	smndc1	100	79.832	Xiphophorus_maculatus